Wall clock time and date at job start Mon Mar 30 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76205 * 103.00017 * 2 1 4 4 C 1.39066 * 120.01840 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.16016 * 179.97438 * 4 3 2 6 6 C 1.38114 * 120.20086 * 359.76512 * 5 4 3 7 7 C 1.39355 * 120.04279 * 0.51435 * 6 5 4 8 8 C 1.48427 * 120.08256 * 179.74139 * 7 6 5 9 9 C 1.39706 * 120.40959 * 179.74633 * 8 7 6 10 10 N 1.31910 * 121.15029 * 179.97438 * 9 8 7 11 11 C 1.31521 * 122.12021 * 0.02562 * 10 9 8 12 12 C 1.40769 * 120.66720 * 359.73899 * 11 10 9 13 13 C 1.41436 * 120.60812 * 180.26690 * 12 11 10 14 14 H 1.07991 * 120.00070 * 23.73228 * 13 12 11 15 15 C 1.39939 * 119.99882 * 203.72627 * 13 12 11 16 16 N 1.30827 * 119.99905 * 17.54785 * 15 13 12 17 17 Si 1.86795 * 119.99810 * 197.54079 * 15 13 12 18 18 H 1.48503 * 109.47137 * 60.00484 * 17 15 13 19 19 H 1.48497 * 109.47242 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47598 * 300.00503 * 17 15 13 21 21 C 1.39122 * 120.40947 * 359.72177 * 8 7 6 22 22 C 1.38755 * 120.02151 * 179.97438 * 3 2 1 23 23 H 1.08995 * 109.46900 * 59.99981 * 1 2 3 24 24 H 1.08996 * 109.47020 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46752 * 300.00004 * 1 2 3 26 26 H 1.08001 * 119.92288 * 359.97438 * 4 3 2 27 27 H 1.07992 * 119.90292 * 180.02562 * 5 4 3 28 28 H 1.08007 * 119.97778 * 180.25209 * 6 5 4 29 29 H 1.08001 * 119.42586 * 0.02562 * 9 8 7 30 30 H 1.07998 * 119.66954 * 180.02562 * 11 10 9 31 31 H 0.96996 * 119.99964 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.95601 * 0.02562 * 21 8 7 33 33 H 1.08001 * 120.09905 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1936 2.6656 0.0005 5 6 1.5011 4.0124 0.0011 6 6 2.8194 4.4241 0.0060 7 6 3.8450 3.4807 -0.0004 8 6 5.2621 3.9221 -0.0010 9 6 6.2956 2.9822 -0.0020 10 7 7.5600 3.3582 -0.0030 11 6 7.9127 4.6252 -0.0026 12 6 6.9388 5.6416 -0.0065 13 6 7.3195 7.0038 -0.0117 14 1 8.2894 7.2919 -0.3891 15 6 6.4393 7.9781 0.4722 16 7 5.4322 7.6307 1.2315 17 14 6.7026 9.7748 0.0341 18 1 6.6433 9.9386 -1.4406 19 1 5.6419 10.5992 0.6671 20 1 8.0319 10.2152 0.5280 21 6 5.5775 5.2771 -0.0009 22 6 3.5372 2.1231 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1611 2.3488 0.0005 27 1 0.7082 4.7457 0.0019 28 1 3.0557 5.4780 0.0105 29 1 6.0552 1.9292 -0.0029 30 1 8.9601 4.8886 -0.0039 31 1 4.8223 8.3061 1.5672 32 1 4.8014 6.0282 -0.0001 33 1 4.3286 1.3882 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241316290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:39 Heat of formation + Delta-G solvation = 27.411103 kcal Electronic energy + Delta-G solvation = -17185.790072 eV Core-core repulsion = 14494.047672 eV Total energy + Delta-G solvation = -2691.742400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74985 -39.39626 -36.01591 -34.11390 -32.47827 -31.88894 -30.54844 -29.21212 -27.60236 -24.74119 -24.26867 -22.72159 -21.99263 -19.38135 -18.40366 -17.70643 -17.22428 -16.76426 -16.60995 -15.74817 -15.45009 -15.06672 -14.79374 -14.59046 -14.52202 -14.41148 -13.70429 -13.61295 -13.44016 -13.30928 -13.14167 -12.82999 -12.38988 -12.33990 -12.12305 -11.69607 -11.23445 -11.13815 -11.12378 -10.47428 -10.08108 -9.82954 -9.04779 -8.71472 -8.35169 -6.49083 -0.15629 0.29063 0.57733 0.89090 1.18164 1.39310 1.50195 1.51819 1.54745 2.17436 2.59367 2.87726 3.69841 3.73876 3.88335 4.02258 4.21404 4.30919 4.31691 4.33921 4.46339 4.55667 4.64546 4.78949 4.88025 4.94260 5.04969 5.15586 5.17416 5.29018 5.42302 5.51786 5.82255 5.85643 5.92163 6.00526 6.44074 6.70894 6.72640 7.63384 8.20971 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.004639 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.299850 B = 6034.135385 C = 6974.284356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.152 6.152 3 C -0.088 4.088 4 C -0.136 4.136 5 C -0.094 4.094 6 C -0.130 4.130 7 C -0.022 4.022 8 C -0.091 4.091 9 C -0.037 4.037 10 N -0.479 5.479 11 C -0.041 4.041 12 C 0.038 3.962 13 C -0.480 4.480 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.815 5.815 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.138 4.138 22 C -0.108 4.108 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.094 0.906 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.294 0.706 32 H 0.130 0.870 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 -5.631 -1.764 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.089 5.911 3 C -0.200 4.200 4 C -0.160 4.160 5 C -0.113 4.113 6 C -0.150 4.150 7 C -0.025 4.025 8 C -0.094 4.094 9 C -0.195 4.195 10 N -0.186 5.186 11 C -0.201 4.201 12 C 0.034 3.966 13 C -0.509 4.509 14 H 0.106 0.894 15 C -0.179 4.179 16 N -0.439 5.439 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.164 4.164 22 C -0.131 4.131 23 H 0.114 0.886 24 H 0.146 0.854 25 H 0.113 0.887 26 H 0.174 0.826 27 H 0.173 0.827 28 H 0.135 0.865 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.623 -7.262 -1.609 14.652 hybrid contribution -0.798 2.518 0.041 2.642 sum -13.421 -4.744 -1.568 14.321 Atomic orbital electron populations 1.23787 0.91043 1.08641 1.06706 1.85557 1.10480 1.02100 1.92916 1.21729 0.95931 0.97729 1.04634 1.21483 0.99064 0.92543 1.02866 1.21263 0.95695 0.96305 0.98064 1.21446 0.93208 0.99418 1.00929 1.18831 0.91815 0.93353 0.98473 1.19726 0.93006 0.94485 1.02134 1.22193 0.87544 0.98531 1.11241 1.66943 1.20682 1.20423 1.10588 1.22751 0.98927 0.87815 1.10600 1.18810 0.92566 0.95114 0.90146 1.19849 1.03120 0.91016 1.36888 0.89390 1.26838 0.93201 1.06382 0.91433 1.69820 1.12978 1.38868 1.22270 0.85157 0.79506 0.74818 0.79766 1.18355 1.18931 1.18214 1.21895 0.96991 0.93960 1.03531 1.20831 0.95344 0.94725 1.02242 0.88614 0.85396 0.88705 0.82608 0.82669 0.86500 0.83947 0.84544 0.89476 0.85286 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.15 113.37 1.04 -0.71 16 2 S -0.15 -3.59 22.56 -56.49 -1.27 -4.87 16 3 C -0.09 -2.60 6.11 22.59 0.14 -2.46 16 4 C -0.14 -3.45 9.36 22.45 0.21 -3.24 16 5 C -0.09 -2.62 10.03 22.22 0.22 -2.39 16 6 C -0.13 -4.76 9.43 22.51 0.21 -4.54 16 7 C -0.02 -0.91 5.87 -20.06 -0.12 -1.03 16 8 C -0.09 -4.41 5.88 -19.99 -0.12 -4.53 16 9 C -0.04 -1.81 10.60 85.04 0.90 -0.91 16 10 N -0.48 -24.75 10.32 -192.78 -1.99 -26.74 16 11 C -0.04 -2.13 10.96 85.36 0.94 -1.19 16 12 C 0.04 2.05 5.59 -21.21 -0.12 1.94 16 13 C -0.48 -24.91 9.08 23.47 0.21 -24.69 16 14 H 0.09 4.32 7.90 -2.92 -0.02 4.30 16 15 C 0.04 1.83 5.18 85.25 0.44 2.27 16 16 N -0.81 -40.16 10.92 21.83 0.24 -39.93 16 17 Si 0.99 35.83 29.59 68.60 2.03 37.86 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 19 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 21 C -0.14 -7.24 8.17 23.14 0.19 -7.05 16 22 C -0.11 -3.89 9.18 22.63 0.21 -3.69 16 23 H 0.09 1.07 7.74 -2.39 -0.02 1.05 16 24 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 1.08 7.74 -2.39 -0.02 1.06 16 26 H 0.16 2.71 5.86 -2.91 -0.02 2.69 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.12 4.55 6.25 -2.91 -0.02 4.53 16 29 H 0.14 6.12 6.20 -2.91 -0.02 6.10 16 30 H 0.14 6.62 8.06 -2.91 -0.02 6.60 16 31 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 32 H 0.13 6.73 4.43 -2.91 -0.01 6.72 16 33 H 0.13 4.45 6.21 -2.91 -0.02 4.43 16 Total: -1.00 -61.65 294.20 4.50 -57.15 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 1.14 Total: 28.76 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 4.35 Total: -52.23 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -1.75 Total: -66.67 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.27 Total: -4.87 kcal Total: -61.65 4.50 -57.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.558 kcal (2) G-P(sol) polarization free energy of solvation -61.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds