Wall clock time and date at job start Mon Mar 30 2020 00:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76203 * 103.00188 * 2 1 4 4 C 1.39060 * 120.01866 * 0.02562 * 3 2 1 5 5 C 1.38149 * 120.16559 * 179.97438 * 4 3 2 6 6 C 1.38106 * 120.20324 * 359.76809 * 5 4 3 7 7 C 1.39376 * 120.04021 * 0.51412 * 6 5 4 8 8 C 1.48392 * 120.08596 * 179.74227 * 7 6 5 9 9 C 1.40030 * 120.82636 * 179.72610 * 8 7 6 10 10 C 1.38500 * 119.42712 * 179.97438 * 9 8 7 11 11 N 1.31482 * 121.14767 * 359.97438 * 10 9 8 12 12 C 1.33643 * 121.78974 * 0.02562 * 11 10 9 13 13 C 1.41421 * 119.77653 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99993 * 188.93971 * 13 12 11 15 15 C 1.40037 * 120.00177 * 8.93790 * 13 12 11 16 16 N 1.30734 * 119.99843 * 195.79551 * 15 13 12 17 17 Si 1.86802 * 119.99738 * 15.79997 * 15 13 12 18 18 H 1.48497 * 109.46811 * 269.99625 * 17 15 13 19 19 H 1.48501 * 109.47379 * 29.99772 * 17 15 13 20 20 H 1.48501 * 109.47040 * 150.00080 * 17 15 13 21 21 C 1.39307 * 120.81971 * 359.97438 * 8 7 6 22 22 C 1.38754 * 120.02078 * 180.02562 * 3 2 1 23 23 H 1.09008 * 109.46947 * 300.00558 * 1 2 3 24 24 H 1.09005 * 109.47051 * 59.99935 * 1 2 3 25 25 H 1.08997 * 109.47767 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.92245 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.90146 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.98410 * 180.24761 * 6 5 4 29 29 H 1.08003 * 120.28274 * 359.96830 * 9 8 7 30 30 H 1.08007 * 119.42922 * 179.97438 * 10 9 8 31 31 H 0.96995 * 120.00461 * 354.80134 * 16 15 13 32 32 H 1.08000 * 120.58391 * 359.97438 * 21 8 7 33 33 H 1.08006 * 120.10056 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1937 2.6656 0.0005 5 6 1.5010 4.0125 0.0011 6 6 2.8193 4.4243 0.0059 7 6 3.8450 3.4807 -0.0006 8 6 5.2618 3.9221 -0.0011 9 6 6.3045 2.9875 -0.0019 10 6 7.6164 3.4316 -0.0029 11 7 7.8997 4.7155 -0.0038 12 6 6.9422 5.6478 -0.0032 13 6 7.2953 7.0172 -0.0036 14 1 6.5355 7.7708 0.1422 15 6 8.6300 7.3962 -0.1931 16 7 9.0141 8.6091 0.1076 17 14 9.8615 6.1685 -0.8756 18 1 10.4914 5.4245 0.2446 19 1 9.1631 5.2137 -1.7733 20 1 10.9090 6.8915 -1.6407 21 6 5.5874 5.2766 0.0042 22 6 3.5371 2.1230 -0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.1612 2.3488 0.0005 27 1 0.7081 4.7456 0.0019 28 1 3.0555 5.4781 0.0104 29 1 6.0876 1.9295 -0.0015 30 1 8.4207 2.7108 -0.0031 31 1 8.3614 9.2685 0.3902 32 1 4.8118 6.0281 0.0084 33 1 4.3286 1.3880 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241316365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:52 Heat of formation + Delta-G solvation = 34.583297 kcal Electronic energy + Delta-G solvation = -17051.814923 eV Core-core repulsion = 14360.383532 eV Total energy + Delta-G solvation = -2691.431391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.40066 -38.10034 -33.98491 -32.84865 -31.16755 -30.29373 -29.81605 -28.47110 -25.64658 -23.52874 -22.77399 -21.24506 -20.43278 -18.49478 -17.32272 -16.42282 -15.61097 -15.23571 -14.87545 -14.39586 -14.05630 -13.98489 -13.95574 -13.61674 -13.11393 -12.89006 -12.59201 -12.50801 -12.26438 -12.16542 -11.60238 -11.12538 -10.82380 -10.61594 -10.28521 -10.14970 -9.80142 -9.77342 -9.35071 -9.18880 -8.07365 -7.95278 -7.78783 -7.43091 -7.31330 -4.81986 1.06547 1.38087 1.41494 2.29430 2.50792 2.67152 3.53880 3.61330 3.91457 3.96954 4.36934 4.59565 4.80048 4.80275 4.84533 4.93108 5.17214 5.36544 5.42311 5.48841 5.54567 5.66253 5.79402 5.92744 6.19375 6.29759 6.35538 6.38042 6.52583 6.72293 6.88652 6.98669 7.19689 7.36272 7.41624 7.62213 8.02583 8.23736 8.58038 9.45914 9.93928 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.004120 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.322781 B = 6794.117301 C = 7429.201340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.126 6.126 3 C -0.086 4.086 4 C -0.144 4.144 5 C -0.102 4.102 6 C -0.113 4.113 7 C -0.005 4.005 8 C 0.009 3.991 9 C -0.302 4.302 10 C 0.149 3.851 11 N -0.569 5.569 12 C 0.250 3.750 13 C -0.477 4.477 14 H 0.082 0.918 15 C 0.049 3.951 16 N -0.800 5.800 17 Si 1.143 2.857 18 H -0.284 1.284 19 H -0.279 1.279 20 H -0.327 1.327 21 C -0.239 4.239 22 C -0.089 4.089 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.284 0.716 32 H 0.108 0.892 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.473 -11.734 -0.540 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.115 5.885 3 C -0.198 4.198 4 C -0.167 4.167 5 C -0.122 4.122 6 C -0.134 4.134 7 C -0.007 4.007 8 C 0.003 3.997 9 C -0.325 4.325 10 C -0.012 4.012 11 N -0.287 5.287 12 C 0.127 3.873 13 C -0.508 4.508 14 H 0.100 0.900 15 C -0.173 4.173 16 N -0.421 5.421 17 Si 0.976 3.024 18 H -0.211 1.211 19 H -0.207 1.207 20 H -0.259 1.259 21 C -0.262 4.262 22 C -0.112 4.112 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.471 -12.555 -0.840 17.026 hybrid contribution -3.611 1.207 0.542 3.845 sum -15.081 -11.348 -0.298 18.876 Atomic orbital electron populations 1.23633 0.95168 1.06788 1.05553 1.85455 1.05979 1.03913 1.93174 1.21539 0.96563 0.95924 1.05770 1.21070 0.97707 0.93272 1.04697 1.20937 0.96422 0.95069 0.99733 1.21399 0.92000 1.00113 0.99842 1.18935 0.93097 0.92136 0.96509 1.18640 0.90062 0.93758 0.97272 1.21197 0.93217 0.97977 1.20134 1.22064 0.94373 0.92266 0.92515 1.66777 1.36002 1.01589 1.24362 1.18510 0.87535 0.92982 0.88278 1.20738 0.96620 0.91155 1.42302 0.90000 1.27738 0.99786 0.99310 0.90501 1.70619 1.38961 1.04756 1.27770 0.82121 0.71693 0.71500 0.77095 1.21076 1.20664 1.25909 1.21754 0.97017 0.93852 1.13529 1.20870 0.94043 0.95713 1.00594 0.89868 0.89857 0.87621 0.86284 0.85814 0.85212 0.87590 0.85300 0.90441 0.87366 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.15 101.05 0.92 -0.17 16 2 S -0.13 -1.49 22.56 -107.50 -2.43 -3.91 16 3 C -0.09 -1.21 6.11 -39.09 -0.24 -1.45 16 4 C -0.14 -1.83 9.36 -39.31 -0.37 -2.20 16 5 C -0.10 -1.35 10.03 -39.66 -0.40 -1.74 16 6 C -0.11 -1.80 9.44 -39.21 -0.37 -2.18 16 7 C 0.00 -0.09 5.87 -104.93 -0.62 -0.70 16 8 C 0.01 0.18 5.91 -104.65 -0.62 -0.44 16 9 C -0.30 -6.21 9.51 -38.81 -0.37 -6.58 16 10 C 0.15 3.27 11.17 -17.60 -0.20 3.07 16 11 N -0.57 -14.40 5.02 -11.21 -0.06 -14.46 16 12 C 0.25 6.46 6.27 -85.02 -0.53 5.93 16 13 C -0.48 -12.85 9.51 -37.70 -0.36 -13.21 16 14 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 15 C 0.05 1.32 5.51 -17.34 -0.10 1.22 16 16 N -0.80 -21.59 13.65 55.55 0.76 -20.83 16 17 Si 1.14 27.78 25.94 -169.99 -4.41 23.37 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.83 6.54 56.52 0.37 -6.46 16 20 H -0.33 -7.75 7.11 56.52 0.40 -7.35 16 21 C -0.24 -5.53 9.22 -38.34 -0.35 -5.89 16 22 C -0.09 -1.44 9.19 -39.03 -0.36 -1.80 16 23 H 0.08 0.59 7.74 -51.92 -0.40 0.18 16 24 H 0.08 0.59 7.75 -51.92 -0.40 0.19 16 25 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.12 1.18 5.86 -52.49 -0.31 0.87 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 2.01 6.28 -52.48 -0.33 1.68 16 29 H 0.11 1.88 6.32 -52.48 -0.33 1.55 16 30 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 31 H 0.28 7.32 8.73 -40.82 -0.36 6.97 16 32 H 0.11 2.31 6.33 -52.49 -0.33 1.98 16 33 H 0.13 2.07 6.28 -52.48 -0.33 1.74 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -28.90 291.77 -9.00 -37.90 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.31 Total: -0.33 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -3.95 Total: -26.14 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.70 Total: -35.29 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: -4.41 Total: 23.37 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.43 Total: -3.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.90 -9.00 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.482 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds