Wall clock time and date at job start Mon Mar 30 2020 00:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76203 * 103.00188 * 2 1 4 4 C 1.39060 * 120.01866 * 0.02562 * 3 2 1 5 5 C 1.38149 * 120.16559 * 179.97438 * 4 3 2 6 6 C 1.38106 * 120.20324 * 359.76809 * 5 4 3 7 7 C 1.39376 * 120.04021 * 0.51412 * 6 5 4 8 8 C 1.48392 * 120.08596 * 179.74227 * 7 6 5 9 9 C 1.40030 * 120.82636 * 179.72610 * 8 7 6 10 10 C 1.38500 * 119.42712 * 179.97438 * 9 8 7 11 11 N 1.31482 * 121.14767 * 359.97438 * 10 9 8 12 12 C 1.33643 * 121.78974 * 0.02562 * 11 10 9 13 13 C 1.41421 * 119.77653 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99993 * 188.93971 * 13 12 11 15 15 C 1.40037 * 120.00177 * 8.93790 * 13 12 11 16 16 N 1.30734 * 119.99843 * 195.79551 * 15 13 12 17 17 Si 1.86802 * 119.99738 * 15.79997 * 15 13 12 18 18 H 1.48497 * 109.46811 * 269.99625 * 17 15 13 19 19 H 1.48501 * 109.47379 * 29.99772 * 17 15 13 20 20 H 1.48501 * 109.47040 * 150.00080 * 17 15 13 21 21 C 1.39307 * 120.81971 * 359.97438 * 8 7 6 22 22 C 1.38754 * 120.02078 * 180.02562 * 3 2 1 23 23 H 1.09008 * 109.46947 * 300.00558 * 1 2 3 24 24 H 1.09005 * 109.47051 * 59.99935 * 1 2 3 25 25 H 1.08997 * 109.47767 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.92245 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.90146 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.98410 * 180.24761 * 6 5 4 29 29 H 1.08003 * 120.28274 * 359.96830 * 9 8 7 30 30 H 1.08007 * 119.42922 * 179.97438 * 10 9 8 31 31 H 0.96995 * 120.00461 * 354.80134 * 16 15 13 32 32 H 1.08000 * 120.58391 * 359.97438 * 21 8 7 33 33 H 1.08006 * 120.10056 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1937 2.6656 0.0005 5 6 1.5010 4.0125 0.0011 6 6 2.8193 4.4243 0.0059 7 6 3.8450 3.4807 -0.0006 8 6 5.2618 3.9221 -0.0011 9 6 6.3045 2.9875 -0.0019 10 6 7.6164 3.4316 -0.0029 11 7 7.8997 4.7155 -0.0038 12 6 6.9422 5.6478 -0.0032 13 6 7.2953 7.0172 -0.0036 14 1 6.5355 7.7708 0.1422 15 6 8.6300 7.3962 -0.1931 16 7 9.0141 8.6091 0.1076 17 14 9.8615 6.1685 -0.8756 18 1 10.4914 5.4245 0.2446 19 1 9.1631 5.2137 -1.7733 20 1 10.9090 6.8915 -1.6407 21 6 5.5874 5.2766 0.0042 22 6 3.5371 2.1230 -0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.1612 2.3488 0.0005 27 1 0.7081 4.7456 0.0019 28 1 3.0555 5.4781 0.0104 29 1 6.0876 1.9295 -0.0015 30 1 8.4207 2.7108 -0.0031 31 1 8.3614 9.2685 0.3902 32 1 4.8118 6.0281 0.0084 33 1 4.3286 1.3880 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241316365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:52 Heat of formation + Delta-G solvation = 20.031449 kcal Electronic energy + Delta-G solvation = -17052.445938 eV Core-core repulsion = 14360.383532 eV Total energy + Delta-G solvation = -2692.062406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88602 -39.59122 -35.86527 -34.38762 -32.58929 -31.85071 -30.91002 -29.43964 -27.50157 -24.97519 -24.12212 -22.74851 -22.06050 -20.27630 -18.65217 -17.56677 -17.19394 -16.76216 -16.23674 -15.85281 -15.63430 -15.16196 -14.85188 -14.84859 -14.58193 -14.31065 -14.17186 -13.93607 -13.82394 -13.34128 -12.91803 -12.76407 -12.31644 -12.10893 -11.86718 -11.73237 -11.23976 -11.17972 -11.14589 -10.56448 -9.93230 -9.77735 -9.34332 -9.28603 -8.39324 -6.81729 -0.24843 0.23935 0.54737 0.66732 1.11285 1.48639 1.57908 1.69694 2.00492 2.43985 2.53388 2.82467 3.59433 3.61235 3.83306 3.93899 4.06462 4.22980 4.28739 4.30170 4.36947 4.47023 4.53159 4.71961 4.75144 4.86374 4.93133 5.08351 5.22552 5.30222 5.33757 5.37337 5.44492 5.65728 5.85977 5.91088 6.02754 6.35315 6.64271 7.59305 7.93394 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.004120 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.322781 B = 6794.117301 C = 7429.201340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.149 6.149 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.096 4.096 6 C -0.126 4.126 7 C -0.038 4.038 8 C 0.014 3.986 9 C -0.285 4.285 10 C 0.132 3.868 11 N -0.592 5.592 12 C 0.237 3.763 13 C -0.516 4.516 14 H 0.065 0.935 15 C 0.022 3.978 16 N -0.827 5.827 17 Si 1.177 2.823 18 H -0.282 1.282 19 H -0.284 1.284 20 H -0.321 1.321 21 C -0.261 4.261 22 C -0.097 4.097 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.127 0.873 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.166 0.834 31 H 0.281 0.719 32 H 0.114 0.886 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.358 -14.906 -0.692 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.093 5.907 3 C -0.204 4.204 4 C -0.154 4.154 5 C -0.116 4.116 6 C -0.147 4.147 7 C -0.040 4.040 8 C 0.008 3.992 9 C -0.307 4.307 10 C -0.027 4.027 11 N -0.310 5.310 12 C 0.113 3.887 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.450 5.450 17 Si 1.007 2.993 18 H -0.209 1.209 19 H -0.212 1.212 20 H -0.253 1.253 21 C -0.283 4.283 22 C -0.121 4.121 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.145 0.855 26 H 0.173 0.827 27 H 0.175 0.825 28 H 0.141 0.859 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.363 -15.747 -0.987 21.336 hybrid contribution -3.072 1.835 0.606 3.629 sum -17.435 -13.913 -0.381 22.309 Atomic orbital electron populations 1.23799 0.91162 1.08662 1.06713 1.85595 1.10369 1.01974 1.92772 1.21774 0.96068 0.97796 1.04745 1.21544 0.99181 0.92695 1.02021 1.21297 0.95886 0.96291 0.98087 1.21506 0.93124 0.99639 1.00381 1.18838 0.91626 0.93529 1.00024 1.19036 0.92448 0.92914 0.94821 1.21689 0.92632 0.99702 1.16691 1.22741 0.96279 0.91772 0.91938 1.66734 1.36421 1.02883 1.24990 1.18653 0.88913 0.92818 0.88332 1.20697 0.96606 0.91772 1.45756 0.91654 1.28451 1.00816 0.99972 0.90295 1.70641 1.38872 1.05197 1.30260 0.81686 0.70637 0.70334 0.76647 1.20861 1.21167 1.25279 1.21845 0.96195 0.95387 1.14874 1.20896 0.95384 0.94781 1.01004 0.88655 0.88639 0.85472 0.82699 0.82505 0.85857 0.84277 0.81700 0.90791 0.86849 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.15 113.37 1.04 -0.36 16 2 S -0.15 -2.98 22.56 -56.49 -1.27 -4.25 16 3 C -0.09 -2.29 6.11 22.59 0.14 -2.15 16 4 C -0.13 -2.76 9.36 22.45 0.21 -2.55 16 5 C -0.10 -2.21 10.03 22.22 0.22 -1.99 16 6 C -0.13 -3.84 9.44 22.51 0.21 -3.63 16 7 C -0.04 -1.33 5.87 -20.06 -0.12 -1.45 16 8 C 0.01 0.59 5.91 -19.88 -0.12 0.47 16 9 C -0.29 -11.22 9.51 22.77 0.22 -11.00 16 10 C 0.13 5.61 11.17 84.81 0.95 6.55 16 11 N -0.59 -30.06 5.02 -189.36 -0.95 -31.01 16 12 C 0.24 12.64 6.27 40.20 0.25 12.89 16 13 C -0.52 -29.34 9.51 23.49 0.22 -29.11 16 14 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 15 C 0.02 1.23 5.51 85.29 0.47 1.70 16 16 N -0.83 -46.67 13.65 21.84 0.30 -46.37 16 17 Si 1.18 57.63 25.94 68.60 1.78 59.41 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.28 -13.92 6.54 99.48 0.65 -13.27 16 20 H -0.32 -15.11 7.11 99.48 0.71 -14.41 16 21 C -0.26 -12.38 9.22 23.07 0.21 -12.17 16 22 C -0.10 -2.95 9.19 22.63 0.21 -2.74 16 23 H 0.09 0.82 7.74 -2.39 -0.02 0.80 16 24 H 0.09 0.82 7.75 -2.39 -0.02 0.80 16 25 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.16 2.14 5.86 -2.91 -0.02 2.13 16 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.12 3.82 6.28 -2.91 -0.02 3.81 16 29 H 0.14 4.52 6.32 -2.91 -0.02 4.50 16 30 H 0.17 5.66 8.06 -2.91 -0.02 5.63 16 31 H 0.28 15.37 8.73 -92.71 -0.81 14.56 16 32 H 0.11 5.08 6.33 -2.91 -0.02 5.07 16 33 H 0.13 3.83 6.28 -2.91 -0.02 3.81 16 Total: -1.00 -65.07 291.77 5.01 -60.07 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.04 Total: 7.70 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 4.12 Total: -45.54 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -0.65 Total: -77.38 kcal Atomic # 14 Polarization: 57.63 SS G_CDS: 1.78 Total: 59.41 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -1.27 Total: -4.25 kcal Total: -65.07 5.01 -60.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.100 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds