Wall clock time and date at job start Mon Mar 30 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76206 * 103.00229 * 2 1 4 4 C 1.39156 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.38235 * 120.22229 * 180.02562 * 4 3 2 6 6 C 1.37998 * 120.23656 * 359.97172 * 5 4 3 7 7 C 1.39724 * 120.00823 * 0.02562 * 6 5 4 8 8 C 1.47823 * 120.11579 * 179.97438 * 7 6 5 9 9 C 1.39674 * 120.65019 * 129.97366 * 8 7 6 10 10 C 1.38399 * 118.47686 * 180.02562 * 9 8 7 11 11 C 1.39054 * 119.72340 * 359.97438 * 10 9 8 12 12 N 1.31284 * 121.33873 * 0.02562 * 11 10 9 13 13 C 1.33693 * 121.63692 * 359.97438 * 12 11 10 14 14 C 1.40820 * 119.94020 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99981 * 179.97438 * 14 13 12 16 16 C 1.40151 * 119.99826 * 0.02562 * 14 13 12 17 17 N 1.30690 * 120.00005 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99889 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47190 * 89.99514 * 18 16 14 20 20 H 1.48504 * 109.47085 * 209.99884 * 18 16 14 21 21 H 1.48502 * 109.46994 * 329.99631 * 18 16 14 22 22 C 1.38642 * 120.00532 * 180.23053 * 3 2 1 23 23 H 1.09004 * 109.46822 * 300.00225 * 1 2 3 24 24 H 1.09001 * 109.47088 * 59.99625 * 1 2 3 25 25 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.89177 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.87785 * 179.97438 * 5 4 3 28 28 H 1.07998 * 119.99590 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.76590 * 0.02727 * 9 8 7 30 30 H 1.07996 * 120.13487 * 180.02562 * 10 9 8 31 31 H 1.08007 * 119.33144 * 180.28250 * 11 10 9 32 32 H 0.96997 * 120.00354 * 180.02562 * 17 16 14 33 33 H 1.08003 * 120.11902 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1927 2.6660 0.0005 5 6 1.4985 4.0141 0.0000 6 6 2.8149 4.4280 -0.0005 7 6 3.8445 3.4834 -0.0010 8 6 5.2555 3.9242 -0.0021 9 6 6.1660 3.3999 0.9183 10 6 7.4758 3.8449 0.8774 11 6 7.8529 4.7925 -0.0679 12 7 6.9895 5.2792 -0.9288 13 6 5.7112 4.8877 -0.9375 14 6 4.8153 5.4339 -1.8767 15 1 3.7825 5.1180 -1.8849 16 6 5.2641 6.3865 -2.8015 17 7 6.5140 6.7684 -2.7919 18 14 4.0759 7.1105 -4.0478 19 1 3.4411 8.3263 -3.4784 20 1 4.8146 7.4707 -5.2847 21 1 3.0273 6.1099 -4.3712 22 6 3.5362 2.1223 -0.0048 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.1605 2.3483 0.0005 27 1 0.7042 4.7459 0.0000 28 1 3.0494 5.4823 -0.0013 29 1 5.8550 2.6642 1.6452 30 1 8.2022 3.4572 1.5762 31 1 8.8778 5.1319 -0.0971 32 1 6.8245 7.4280 -3.4317 33 1 4.3276 1.3874 -0.0090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241316510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:41 Heat of formation + Delta-G solvation = 51.880994 kcal Electronic energy + Delta-G solvation = -17518.439255 eV Core-core repulsion = 14827.757948 eV Total energy + Delta-G solvation = -2690.681306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.95344 -37.56169 -33.76959 -32.30335 -30.71328 -30.14441 -29.41621 -28.02951 -25.80091 -22.82965 -22.32483 -21.20252 -20.28360 -17.60479 -17.09831 -15.93528 -15.57461 -14.82674 -14.56687 -14.29637 -14.05689 -13.88356 -13.76679 -13.17434 -12.75185 -12.51806 -12.32846 -12.07583 -11.97901 -11.30861 -11.28521 -11.17325 -11.01325 -10.75906 -10.37885 -9.98744 -9.97629 -9.48382 -9.20140 -8.68400 -8.09914 -7.67174 -7.43957 -7.07783 -6.52592 -4.61327 1.67871 1.72534 1.85784 2.60003 2.69382 2.95924 3.02882 3.06473 3.16205 3.86065 4.31677 4.65350 5.02021 5.03097 5.29122 5.37535 5.58341 5.73375 5.79075 5.97737 6.01860 6.04451 6.14525 6.34297 6.47856 6.57355 6.70233 6.79216 6.93443 7.03044 7.17926 7.28013 7.43193 7.58129 7.69985 7.95293 8.15097 8.53022 8.82065 9.99159 10.17861 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.006411 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.712379 B = 4366.465673 C = 5575.742210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.140 6.140 3 C -0.083 4.083 4 C -0.160 4.160 5 C -0.106 4.106 6 C -0.110 4.110 7 C 0.046 3.954 8 C -0.242 4.242 9 C -0.030 4.030 10 C -0.321 4.321 11 C 0.134 3.866 12 N -0.482 5.482 13 C 0.269 3.731 14 C -0.420 4.420 15 H 0.095 0.905 16 C 0.068 3.932 17 N -0.706 5.706 18 Si 0.904 3.096 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.108 4.108 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.275 0.725 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -5.847 3.041 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.100 5.900 3 C -0.195 4.195 4 C -0.183 4.183 5 C -0.126 4.126 6 C -0.130 4.130 7 C 0.044 3.956 8 C -0.247 4.247 9 C -0.054 4.054 10 C -0.344 4.344 11 C -0.035 4.035 12 N -0.193 5.193 13 C 0.146 3.854 14 C -0.449 4.449 15 H 0.112 0.888 16 C -0.159 4.159 17 N -0.326 5.326 18 Si 0.727 3.273 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.131 4.131 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.149 0.851 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.043 -6.121 2.271 10.359 hybrid contribution -1.481 0.763 0.083 1.668 sum -9.524 -5.358 2.353 11.178 Atomic orbital electron populations 1.23576 0.95463 1.06362 1.05431 1.85323 1.05731 1.05257 1.93645 1.21399 0.96670 0.94997 1.06450 1.20929 0.97173 0.93316 1.06879 1.20885 0.96542 0.94765 1.00398 1.21491 0.91576 1.00422 0.99504 1.18643 0.93098 0.91095 0.92812 1.19321 0.91786 1.08349 1.05238 1.20900 0.92943 0.95899 0.95701 1.21229 0.96551 1.09222 1.07380 1.22627 0.98320 0.91959 0.90563 1.68776 1.01965 1.26307 1.22285 1.18505 0.89468 0.87493 0.89923 1.19849 0.97184 1.17301 1.10590 0.88758 1.26156 0.95503 0.96188 0.98029 1.70108 1.14747 1.19800 1.27992 0.86367 0.81048 0.80063 0.79808 1.19146 1.19920 1.18253 1.20872 0.93505 0.95727 1.02991 0.90053 0.89993 0.87987 0.86969 0.86475 0.85112 0.88479 0.88598 0.86296 0.91352 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.15 101.05 0.92 -0.48 16 2 S -0.14 -2.02 22.56 -107.50 -2.43 -4.44 16 3 C -0.08 -1.44 6.11 -39.09 -0.24 -1.68 16 4 C -0.16 -2.54 9.36 -39.24 -0.37 -2.91 16 5 C -0.11 -1.77 10.02 -39.67 -0.40 -2.17 16 6 C -0.11 -2.16 7.56 -39.11 -0.30 -2.46 16 7 C 0.05 0.98 5.02 -104.93 -0.53 0.46 16 8 C -0.24 -5.78 5.53 -104.07 -0.58 -6.36 16 9 C -0.03 -0.67 9.67 -38.99 -0.38 -1.05 16 10 C -0.32 -7.07 10.10 -39.22 -0.40 -7.47 16 11 C 0.13 3.19 11.17 -17.48 -0.20 2.99 16 12 N -0.48 -13.00 7.85 -10.91 -0.09 -13.09 16 13 C 0.27 7.14 6.56 -84.71 -0.56 6.58 16 14 C -0.42 -10.79 7.96 -37.89 -0.30 -11.09 16 15 H 0.09 2.30 5.23 -52.48 -0.27 2.03 16 16 C 0.07 1.68 5.50 -17.32 -0.10 1.58 16 17 N -0.71 -18.25 11.46 55.56 0.64 -17.61 16 18 Si 0.90 18.16 29.56 -169.99 -5.02 13.14 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 C -0.11 -2.11 9.29 -38.94 -0.36 -2.47 16 23 H 0.08 0.76 7.74 -51.92 -0.40 0.36 16 24 H 0.08 0.79 7.74 -51.92 -0.40 0.39 16 25 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.11 1.46 5.86 -52.49 -0.31 1.16 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.13 2.63 7.23 -52.49 -0.38 2.25 16 29 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 32 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 33 H 0.12 2.31 8.05 -52.48 -0.42 1.89 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -28.31 296.28 -9.63 -37.94 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.44 Total: 6.12 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.76 Total: -26.52 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.55 Total: -30.70 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -2.43 Total: -4.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.31 -9.63 -37.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.823 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds