Wall clock time and date at job start Mon Mar 30 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76206 * 103.00229 * 2 1 4 4 C 1.39156 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.38235 * 120.22229 * 180.02562 * 4 3 2 6 6 C 1.37998 * 120.23656 * 359.97172 * 5 4 3 7 7 C 1.39724 * 120.00823 * 0.02562 * 6 5 4 8 8 C 1.47823 * 120.11579 * 179.97438 * 7 6 5 9 9 C 1.39674 * 120.65019 * 129.97366 * 8 7 6 10 10 C 1.38399 * 118.47686 * 180.02562 * 9 8 7 11 11 C 1.39054 * 119.72340 * 359.97438 * 10 9 8 12 12 N 1.31284 * 121.33873 * 0.02562 * 11 10 9 13 13 C 1.33693 * 121.63692 * 359.97438 * 12 11 10 14 14 C 1.40820 * 119.94020 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99981 * 179.97438 * 14 13 12 16 16 C 1.40151 * 119.99826 * 0.02562 * 14 13 12 17 17 N 1.30690 * 120.00005 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99889 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47190 * 89.99514 * 18 16 14 20 20 H 1.48504 * 109.47085 * 209.99884 * 18 16 14 21 21 H 1.48502 * 109.46994 * 329.99631 * 18 16 14 22 22 C 1.38642 * 120.00532 * 180.23053 * 3 2 1 23 23 H 1.09004 * 109.46822 * 300.00225 * 1 2 3 24 24 H 1.09001 * 109.47088 * 59.99625 * 1 2 3 25 25 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.89177 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.87785 * 179.97438 * 5 4 3 28 28 H 1.07998 * 119.99590 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.76590 * 0.02727 * 9 8 7 30 30 H 1.07996 * 120.13487 * 180.02562 * 10 9 8 31 31 H 1.08007 * 119.33144 * 180.28250 * 11 10 9 32 32 H 0.96997 * 120.00354 * 180.02562 * 17 16 14 33 33 H 1.08003 * 120.11902 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1927 2.6660 0.0005 5 6 1.4985 4.0141 0.0000 6 6 2.8149 4.4280 -0.0005 7 6 3.8445 3.4834 -0.0010 8 6 5.2555 3.9242 -0.0021 9 6 6.1660 3.3999 0.9183 10 6 7.4758 3.8449 0.8774 11 6 7.8529 4.7925 -0.0679 12 7 6.9895 5.2792 -0.9288 13 6 5.7112 4.8877 -0.9375 14 6 4.8153 5.4339 -1.8767 15 1 3.7825 5.1180 -1.8849 16 6 5.2641 6.3865 -2.8015 17 7 6.5140 6.7684 -2.7919 18 14 4.0759 7.1105 -4.0478 19 1 3.4411 8.3263 -3.4784 20 1 4.8146 7.4707 -5.2847 21 1 3.0273 6.1099 -4.3712 22 6 3.5362 2.1223 -0.0048 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.1605 2.3483 0.0005 27 1 0.7042 4.7459 0.0000 28 1 3.0494 5.4823 -0.0013 29 1 5.8550 2.6642 1.6452 30 1 8.2022 3.4572 1.5762 31 1 8.8778 5.1319 -0.0971 32 1 6.8245 7.4280 -3.4317 33 1 4.3276 1.3874 -0.0090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241316510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:41 Heat of formation + Delta-G solvation = 38.139096 kcal Electronic energy + Delta-G solvation = -17519.035148 eV Core-core repulsion = 14827.757948 eV Total energy + Delta-G solvation = -2691.277200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57743 -39.17525 -35.59222 -33.90057 -32.36308 -31.71552 -30.61250 -29.30736 -27.61770 -24.43786 -23.84474 -22.91853 -21.86985 -19.43574 -18.46253 -17.50899 -17.06553 -16.38586 -16.20391 -15.82002 -15.67039 -15.09333 -14.65149 -14.56664 -14.32611 -14.07545 -13.77698 -13.57829 -13.36954 -12.92334 -12.89104 -12.79770 -12.54629 -12.26174 -11.97979 -11.63359 -11.26076 -11.12059 -10.62340 -10.27760 -9.86005 -9.52989 -9.14133 -8.34460 -8.29276 -6.49944 0.20731 0.42816 0.62909 0.94587 1.21320 1.37901 1.50125 1.53394 1.55941 2.19401 2.80205 2.88342 3.89046 3.98226 4.06521 4.21028 4.30588 4.31628 4.33495 4.46041 4.51070 4.62583 4.76524 4.88207 4.89236 5.00205 5.11606 5.17809 5.30709 5.44281 5.56699 5.60729 5.78004 5.95346 6.08825 6.15784 6.29040 6.69021 6.95171 8.14311 8.39400 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.006411 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.712379 B = 4366.465673 C = 5575.742210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.161 6.161 3 C -0.087 4.087 4 C -0.149 4.149 5 C -0.099 4.099 6 C -0.127 4.127 7 C 0.017 3.983 8 C -0.247 4.247 9 C -0.043 4.043 10 C -0.313 4.313 11 C 0.111 3.889 12 N -0.520 5.520 13 C 0.237 3.763 14 C -0.448 4.448 15 H 0.098 0.902 16 C 0.024 3.976 17 N -0.748 5.748 18 Si 0.978 3.022 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.122 4.122 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.127 0.873 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.280 0.720 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.093 -6.961 3.240 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.080 5.920 3 C -0.199 4.199 4 C -0.172 4.172 5 C -0.118 4.118 6 C -0.147 4.147 7 C 0.015 3.985 8 C -0.252 4.252 9 C -0.067 4.067 10 C -0.336 4.336 11 C -0.056 4.056 12 N -0.233 5.233 13 C 0.113 3.887 14 C -0.478 4.478 15 H 0.116 0.884 16 C -0.198 4.198 17 N -0.370 5.370 18 Si 0.797 3.203 19 H -0.181 1.181 20 H -0.192 1.192 21 H -0.180 1.180 22 C -0.145 4.145 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.146 0.854 26 H 0.169 0.831 27 H 0.170 0.830 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.057 -7.256 2.499 13.460 hybrid contribution -0.622 0.921 0.152 1.121 sum -11.679 -6.336 2.650 13.549 Atomic orbital electron populations 1.23752 0.91077 1.08494 1.06590 1.85450 1.10487 1.02856 1.93216 1.21647 0.96009 0.97241 1.04988 1.21390 0.98702 0.92612 1.04496 1.21241 0.95890 0.96120 0.98539 1.21448 0.92863 0.99401 1.00980 1.18636 0.92195 0.92363 0.95334 1.19681 0.93724 1.07330 1.04465 1.21247 0.93069 0.96437 0.95977 1.21562 0.97164 1.07954 1.06899 1.23059 0.98995 0.92664 0.90846 1.68708 1.02797 1.27796 1.23964 1.18956 0.89808 0.88755 0.91157 1.20104 0.97460 1.18611 1.11642 0.88372 1.27043 0.97139 0.96078 0.99582 1.70204 1.16654 1.20835 1.29281 0.85270 0.78575 0.79271 0.77147 1.18120 1.19212 1.18000 1.20823 0.94806 0.94765 1.04126 0.88646 0.88951 0.85434 0.83105 0.83046 0.86730 0.86198 0.85427 0.84309 0.90885 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.15 113.37 1.04 -0.98 16 2 S -0.16 -4.22 22.56 -56.49 -1.27 -5.50 16 3 C -0.09 -2.83 6.11 22.59 0.14 -2.69 16 4 C -0.15 -4.23 9.36 22.49 0.21 -4.02 16 5 C -0.10 -3.04 10.02 22.21 0.22 -2.82 16 6 C -0.13 -4.99 7.56 22.57 0.17 -4.82 16 7 C 0.02 0.75 5.02 -20.06 -0.10 0.65 16 8 C -0.25 -12.26 5.53 -19.51 -0.11 -12.36 16 9 C -0.04 -1.95 9.67 22.66 0.22 -1.73 16 10 C -0.31 -13.86 10.10 22.50 0.23 -13.64 16 11 C 0.11 5.42 11.17 84.97 0.95 6.37 16 12 N -0.52 -29.36 7.85 -188.43 -1.48 -30.84 16 13 C 0.24 13.15 6.56 40.38 0.26 13.42 16 14 C -0.45 -24.02 7.96 23.37 0.19 -23.83 16 15 H 0.10 4.98 5.23 -2.91 -0.02 4.96 16 16 C 0.02 1.24 5.50 85.33 0.47 1.71 16 17 N -0.75 -40.24 11.46 21.86 0.25 -39.99 16 18 Si 0.98 37.85 29.56 68.60 2.03 39.88 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 C -0.12 -4.78 9.29 22.69 0.21 -4.57 16 23 H 0.09 1.27 7.74 -2.39 -0.02 1.25 16 24 H 0.09 1.30 7.74 -2.39 -0.02 1.29 16 25 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.15 3.10 5.86 -2.91 -0.02 3.09 16 27 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 28 H 0.11 4.79 7.23 -2.91 -0.02 4.77 16 29 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 30 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.14 5.96 8.06 -2.91 -0.02 5.93 16 32 H 0.28 13.59 8.29 -92.71 -0.77 12.83 16 33 H 0.11 4.39 8.05 -2.91 -0.02 4.37 16 Total: -1.00 -64.63 296.28 4.75 -59.88 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 1.13 Total: 25.91 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 4.10 Total: -49.33 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -1.23 Total: -70.84 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.27 Total: -5.50 kcal Total: -64.63 4.75 -59.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.020 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds