Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76199 * 99.99968 * 2 1 4 4 C 1.39438 * 119.54618 * 179.97438 * 3 2 1 5 5 C 1.36885 * 119.37941 * 179.69906 * 4 3 2 6 6 C 1.40304 * 118.50058 * 0.58868 * 5 4 3 7 7 C 1.47829 * 120.46929 * 179.70955 * 6 5 4 8 8 C 1.40032 * 119.88605 * 359.44807 * 7 6 5 9 9 C 1.36193 * 120.11117 * 179.76363 * 8 7 6 10 10 C 1.40967 * 119.88231 * 0.48710 * 9 8 7 11 11 C 1.40976 * 120.10754 * 179.74223 * 10 9 8 12 12 H 1.08004 * 120.00303 * 24.73788 * 11 10 9 13 13 C 1.39955 * 120.00256 * 204.73884 * 11 10 9 14 14 N 1.30839 * 119.99429 * 17.97761 * 13 11 10 15 15 Si 1.86791 * 120.00371 * 197.97970 * 13 11 10 16 16 H 1.48508 * 109.47218 * 59.99906 * 15 13 11 17 17 H 1.48501 * 109.47332 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47259 * 299.99740 * 15 13 11 19 19 C 1.40955 * 119.78199 * 359.76486 * 10 9 8 20 20 C 1.36201 * 119.88594 * 359.97438 * 19 10 9 21 21 C 1.39574 * 119.06141 * 359.43273 * 6 5 4 22 22 N 1.31720 * 120.51889 * 0.27868 * 21 6 5 23 23 H 1.09003 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47009 * 299.99350 * 1 2 3 25 25 H 1.08998 * 109.47874 * 59.99689 * 1 2 3 26 26 H 1.08006 * 120.31122 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.74939 * 180.30035 * 5 4 3 28 28 H 1.07991 * 119.94325 * 359.97438 * 8 7 6 29 29 H 1.08000 * 120.06068 * 180.22952 * 9 8 7 30 30 H 0.96999 * 119.99719 * 179.97438 * 14 13 11 31 31 H 1.07998 * 120.05981 * 179.97438 * 19 10 9 32 32 H 1.07999 * 119.94359 * 179.97438 * 20 19 10 33 33 H 1.08001 * 119.73885 * 180.29752 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4299 2.2017 0.0005 5 6 3.6637 3.5505 -0.0057 6 6 2.5632 4.4207 0.0002 7 6 2.7655 5.8851 0.0002 8 6 4.0637 6.4101 0.0061 9 6 4.2554 7.7585 0.0013 10 6 3.1442 8.6259 0.0008 11 6 3.3371 10.0224 0.0014 12 1 4.2528 10.4412 -0.3893 13 6 2.3422 10.8661 0.5082 14 7 1.4091 10.3826 1.2877 15 14 2.3462 12.6824 0.0718 16 1 2.2327 12.8379 -1.4007 17 1 1.1958 13.3522 0.7300 18 1 3.6130 13.3008 0.5387 19 6 1.8395 8.0923 0.0003 20 6 1.6584 6.7424 -0.0003 21 6 1.2746 3.8843 0.0000 22 7 1.0932 2.5796 0.0000 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3635 0.5138 -0.8899 26 1 4.2556 1.5054 0.0014 27 1 4.6725 3.9360 -0.0103 28 1 4.9142 5.7447 0.0109 29 1 5.2570 8.1625 0.0021 30 1 0.7198 10.9675 1.6392 31 1 0.9850 8.7527 0.0003 32 1 0.6591 6.3326 -0.0003 33 1 0.4196 4.5441 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241633060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = 39.519077 kcal Electronic energy + Delta-G solvation = -16894.620387 eV Core-core repulsion = 14203.403028 eV Total energy + Delta-G solvation = -2691.217359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63818 -37.58592 -34.24865 -32.39362 -31.56352 -29.67378 -29.17210 -28.59180 -25.58143 -23.44071 -22.89302 -20.63016 -20.31248 -17.99185 -17.43283 -16.08549 -15.76167 -15.33554 -14.85671 -14.26644 -14.07733 -13.58055 -13.40276 -13.29629 -13.13899 -12.81918 -12.61324 -12.03633 -11.95698 -11.67831 -11.40263 -11.22705 -11.01716 -10.73102 -10.45113 -9.95538 -9.77153 -9.67119 -9.43608 -9.23130 -9.06593 -7.84147 -7.74976 -7.10666 -6.89253 -4.55617 1.18892 1.68994 1.80381 2.36868 2.65804 2.91702 2.93742 2.96678 3.07691 3.70996 4.11213 4.53933 4.89787 5.18489 5.28398 5.31653 5.45146 5.46766 5.51449 5.76239 5.86229 5.94194 6.12374 6.25043 6.39597 6.58854 6.72810 6.80269 6.99423 7.08159 7.15511 7.37916 7.67602 7.80217 7.89377 8.01524 8.19087 8.35675 8.58017 8.70609 9.84949 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.050884 B = 0.003458 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.143877 B = 8096.037424 C = 8565.483419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.107 6.107 3 C 0.065 3.935 4 C -0.130 4.130 5 C -0.099 4.099 6 C -0.017 4.017 7 C -0.210 4.210 8 C -0.058 4.058 9 C -0.230 4.230 10 C 0.121 3.879 11 C -0.439 4.439 12 H 0.084 0.916 13 C 0.072 3.928 14 N -0.772 5.772 15 Si 0.914 3.086 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.172 4.172 20 C -0.071 4.071 21 C 0.076 3.924 22 N -0.476 5.476 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.287 0.713 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -9.511 -1.588 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.129 5.871 3 C -0.182 4.182 4 C -0.155 4.155 5 C -0.125 4.125 6 C -0.021 4.021 7 C -0.212 4.212 8 C -0.076 4.076 9 C -0.249 4.249 10 C 0.118 3.882 11 C -0.467 4.467 12 H 0.102 0.898 13 C -0.149 4.149 14 N -0.395 5.395 15 Si 0.738 3.262 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.191 4.191 20 C -0.090 4.090 21 C -0.085 4.085 22 N -0.187 5.187 23 H 0.111 0.889 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.903 -10.819 -1.426 10.949 hybrid contribution -0.051 2.285 -0.020 2.286 sum -0.954 -8.534 -1.446 8.708 Atomic orbital electron populations 1.23278 0.94145 1.05138 1.06719 1.85331 1.07934 1.00465 1.93325 1.22546 0.91988 0.97342 1.06372 1.21191 0.95810 0.96230 1.02283 1.21253 0.99495 0.92147 0.99615 1.19966 0.93181 0.94577 0.94372 1.17899 0.93804 0.88769 1.20708 1.20390 0.94603 0.94930 0.97672 1.20684 0.97624 0.92810 1.13820 1.17763 0.91307 0.93051 0.86123 1.19749 1.02349 0.91373 1.33221 0.89782 1.26076 0.94044 1.02226 0.92525 1.69819 1.10806 1.38760 1.20098 0.86247 0.79063 0.80667 0.80238 1.18468 1.20011 1.18672 1.20990 0.97731 0.93435 1.06943 1.20511 0.95865 0.93909 0.98693 1.22746 0.96519 0.89971 0.99259 1.67756 1.33234 1.04416 1.13281 0.88890 0.89649 0.89653 0.85433 0.84845 0.88898 0.88551 0.90141 0.86240 0.88862 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.63 101.05 0.97 -0.45 16 2 S -0.11 -1.46 22.69 -107.50 -2.44 -3.90 16 3 C 0.07 1.09 6.97 -16.76 -0.12 0.97 16 4 C -0.13 -2.06 9.77 -39.62 -0.39 -2.45 16 5 C -0.10 -1.68 9.47 -39.30 -0.37 -2.05 16 6 C -0.02 -0.32 5.90 -104.70 -0.62 -0.94 16 7 C -0.21 -4.47 5.90 -104.63 -0.62 -5.09 16 8 C -0.06 -1.22 9.37 -39.64 -0.37 -1.59 16 9 C -0.23 -5.27 9.73 -39.28 -0.38 -5.65 16 10 C 0.12 3.00 5.57 -106.80 -0.60 2.40 16 11 C -0.44 -10.73 9.03 -37.90 -0.34 -11.07 16 12 H 0.08 1.95 7.91 -52.48 -0.42 1.53 16 13 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 14 N -0.77 -18.40 10.96 55.55 0.61 -17.79 16 15 Si 0.91 17.09 29.60 -169.99 -5.03 12.06 16 16 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 17 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 C -0.17 -4.17 8.63 -39.29 -0.34 -4.51 16 20 C -0.07 -1.57 9.37 -39.64 -0.37 -1.95 16 21 C 0.08 1.39 10.60 -17.10 -0.18 1.21 16 22 N -0.48 -8.45 9.10 -11.68 -0.11 -8.56 16 23 H 0.09 0.81 8.14 -51.91 -0.42 0.39 16 24 H 0.08 1.03 8.12 -51.92 -0.42 0.61 16 25 H 0.08 1.02 8.12 -51.92 -0.42 0.60 16 26 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 27 H 0.13 2.03 6.29 -52.49 -0.33 1.70 16 28 H 0.09 1.70 6.23 -52.49 -0.33 1.37 16 29 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 31 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16 32 H 0.09 1.84 6.20 -52.49 -0.33 1.51 16 33 H 0.16 2.65 6.19 -52.49 -0.33 2.33 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -25.77 296.51 -9.60 -35.37 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.29 Total: 7.92 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -3.81 Total: -29.57 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.50 Total: -26.35 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.44 Total: -3.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.77 -9.60 -35.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241633060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.889 kcal (2) G-P(sol) polarization free energy of solvation -25.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds