Wall clock time and date at job start Mon Mar 30 2020 00:54:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.80993 * 1
3 3 C 1.76199 * 99.99968 * 2 1
4 4 C 1.39438 * 119.54618 * 179.97438 * 3 2 1
5 5 C 1.36885 * 119.37941 * 179.69906 * 4 3 2
6 6 C 1.40304 * 118.50058 * 0.58868 * 5 4 3
7 7 C 1.47829 * 120.46929 * 179.70955 * 6 5 4
8 8 C 1.40032 * 119.88605 * 359.44807 * 7 6 5
9 9 C 1.36193 * 120.11117 * 179.76363 * 8 7 6
10 10 C 1.40967 * 119.88231 * 0.48710 * 9 8 7
11 11 C 1.40976 * 120.10754 * 179.74223 * 10 9 8
12 12 H 1.08004 * 120.00303 * 24.73788 * 11 10 9
13 13 C 1.39955 * 120.00256 * 204.73884 * 11 10 9
14 14 N 1.30839 * 119.99429 * 17.97761 * 13 11 10
15 15 Si 1.86791 * 120.00371 * 197.97970 * 13 11 10
16 16 H 1.48508 * 109.47218 * 59.99906 * 15 13 11
17 17 H 1.48501 * 109.47332 * 179.97438 * 15 13 11
18 18 H 1.48498 * 109.47259 * 299.99740 * 15 13 11
19 19 C 1.40955 * 119.78199 * 359.76486 * 10 9 8
20 20 C 1.36201 * 119.88594 * 359.97438 * 19 10 9
21 21 C 1.39574 * 119.06141 * 359.43273 * 6 5 4
22 22 N 1.31720 * 120.51889 * 0.27868 * 21 6 5
23 23 H 1.09003 * 109.47273 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47009 * 299.99350 * 1 2 3
25 25 H 1.08998 * 109.47874 * 59.99689 * 1 2 3
26 26 H 1.08006 * 120.31122 * 359.97438 * 4 3 2
27 27 H 1.08002 * 120.74939 * 180.30035 * 5 4 3
28 28 H 1.07991 * 119.94325 * 359.97438 * 8 7 6
29 29 H 1.08000 * 120.06068 * 180.22952 * 9 8 7
30 30 H 0.96999 * 119.99719 * 179.97438 * 14 13 11
31 31 H 1.07998 * 120.05981 * 179.97438 * 19 10 9
32 32 H 1.07999 * 119.94359 * 179.97438 * 20 19 10
33 33 H 1.08001 * 119.73885 * 180.29752 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8099 0.0000 0.0000
3 6 2.1159 1.7352 0.0000
4 6 3.4299 2.2017 0.0005
5 6 3.6637 3.5505 -0.0057
6 6 2.5632 4.4207 0.0002
7 6 2.7655 5.8851 0.0002
8 6 4.0637 6.4101 0.0061
9 6 4.2554 7.7585 0.0013
10 6 3.1442 8.6259 0.0008
11 6 3.3371 10.0224 0.0014
12 1 4.2528 10.4412 -0.3893
13 6 2.3422 10.8661 0.5082
14 7 1.4091 10.3826 1.2877
15 14 2.3462 12.6824 0.0718
16 1 2.2327 12.8379 -1.4007
17 1 1.1958 13.3522 0.7300
18 1 3.6130 13.3008 0.5387
19 6 1.8395 8.0923 0.0003
20 6 1.6584 6.7424 -0.0003
21 6 1.2746 3.8843 0.0000
22 7 1.0932 2.5796 0.0000
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5137 0.8901
25 1 -0.3635 0.5138 -0.8899
26 1 4.2556 1.5054 0.0014
27 1 4.6725 3.9360 -0.0103
28 1 4.9142 5.7447 0.0109
29 1 5.2570 8.1625 0.0021
30 1 0.7198 10.9675 1.6392
31 1 0.9850 8.7527 0.0003
32 1 0.6591 6.3326 -0.0003
33 1 0.4196 4.5441 -0.0003
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241633060.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:03
Heat of formation + Delta-G solvation = 39.519077 kcal
Electronic energy + Delta-G solvation = -16894.620387 eV
Core-core repulsion = 14203.403028 eV
Total energy + Delta-G solvation = -2691.217359 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 271.073 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.63818 -37.58592 -34.24865 -32.39362 -31.56352 -29.67378 -29.17210 -28.59180
-25.58143 -23.44071 -22.89302 -20.63016 -20.31248 -17.99185 -17.43283 -16.08549
-15.76167 -15.33554 -14.85671 -14.26644 -14.07733 -13.58055 -13.40276 -13.29629
-13.13899 -12.81918 -12.61324 -12.03633 -11.95698 -11.67831 -11.40263 -11.22705
-11.01716 -10.73102 -10.45113 -9.95538 -9.77153 -9.67119 -9.43608 -9.23130
-9.06593 -7.84147 -7.74976 -7.10666 -6.89253 -4.55617 1.18892 1.68994
1.80381 2.36868 2.65804 2.91702 2.93742 2.96678 3.07691 3.70996
4.11213 4.53933 4.89787 5.18489 5.28398 5.31653 5.45146 5.46766
5.51449 5.76239 5.86229 5.94194 6.12374 6.25043 6.39597 6.58854
6.72810 6.80269 6.99423 7.08159 7.15511 7.37916 7.67602 7.80217
7.89377 8.01524 8.19087 8.35675 8.58017 8.70609 9.84949
Molecular weight = 271.07amu
Principal moments of inertia in cm(-1)
A = 0.050884 B = 0.003458 C = 0.003268
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 550.143877 B = 8096.037424 C = 8565.483419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 S -0.107 6.107
3 C 0.065 3.935
4 C -0.130 4.130
5 C -0.099 4.099
6 C -0.017 4.017
7 C -0.210 4.210
8 C -0.058 4.058
9 C -0.230 4.230
10 C 0.121 3.879
11 C -0.439 4.439
12 H 0.084 0.916
13 C 0.072 3.928
14 N -0.772 5.772
15 Si 0.914 3.086
16 H -0.260 1.260
17 H -0.275 1.275
18 H -0.262 1.262
19 C -0.172 4.172
20 C -0.071 4.071
21 C 0.076 3.924
22 N -0.476 5.476
23 H 0.092 0.908
24 H 0.084 0.916
25 H 0.084 0.916
26 H 0.128 0.872
27 H 0.134 0.866
28 H 0.093 0.907
29 H 0.096 0.904
30 H 0.287 0.713
31 H 0.120 0.880
32 H 0.093 0.907
33 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.521 -9.511 -1.588 9.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.293 4.293
2 S 0.129 5.871
3 C -0.182 4.182
4 C -0.155 4.155
5 C -0.125 4.125
6 C -0.021 4.021
7 C -0.212 4.212
8 C -0.076 4.076
9 C -0.249 4.249
10 C 0.118 3.882
11 C -0.467 4.467
12 H 0.102 0.898
13 C -0.149 4.149
14 N -0.395 5.395
15 Si 0.738 3.262
16 H -0.185 1.185
17 H -0.200 1.200
18 H -0.187 1.187
19 C -0.191 4.191
20 C -0.090 4.090
21 C -0.085 4.085
22 N -0.187 5.187
23 H 0.111 0.889
24 H 0.104 0.896
25 H 0.103 0.897
26 H 0.146 0.854
27 H 0.152 0.848
28 H 0.111 0.889
29 H 0.114 0.886
30 H 0.099 0.901
31 H 0.138 0.862
32 H 0.111 0.889
33 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -0.903 -10.819 -1.426 10.949
hybrid contribution -0.051 2.285 -0.020 2.286
sum -0.954 -8.534 -1.446 8.708
Atomic orbital electron populations
1.23278 0.94145 1.05138 1.06719 1.85331 1.07934 1.00465 1.93325
1.22546 0.91988 0.97342 1.06372 1.21191 0.95810 0.96230 1.02283
1.21253 0.99495 0.92147 0.99615 1.19966 0.93181 0.94577 0.94372
1.17899 0.93804 0.88769 1.20708 1.20390 0.94603 0.94930 0.97672
1.20684 0.97624 0.92810 1.13820 1.17763 0.91307 0.93051 0.86123
1.19749 1.02349 0.91373 1.33221 0.89782 1.26076 0.94044 1.02226
0.92525 1.69819 1.10806 1.38760 1.20098 0.86247 0.79063 0.80667
0.80238 1.18468 1.20011 1.18672 1.20990 0.97731 0.93435 1.06943
1.20511 0.95865 0.93909 0.98693 1.22746 0.96519 0.89971 0.99259
1.67756 1.33234 1.04416 1.13281 0.88890 0.89649 0.89653 0.85433
0.84845 0.88898 0.88551 0.90141 0.86240 0.88862 0.82722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.42 9.63 101.05 0.97 -0.45 16
2 S -0.11 -1.46 22.69 -107.50 -2.44 -3.90 16
3 C 0.07 1.09 6.97 -16.76 -0.12 0.97 16
4 C -0.13 -2.06 9.77 -39.62 -0.39 -2.45 16
5 C -0.10 -1.68 9.47 -39.30 -0.37 -2.05 16
6 C -0.02 -0.32 5.90 -104.70 -0.62 -0.94 16
7 C -0.21 -4.47 5.90 -104.63 -0.62 -5.09 16
8 C -0.06 -1.22 9.37 -39.64 -0.37 -1.59 16
9 C -0.23 -5.27 9.73 -39.28 -0.38 -5.65 16
10 C 0.12 3.00 5.57 -106.80 -0.60 2.40 16
11 C -0.44 -10.73 9.03 -37.90 -0.34 -11.07 16
12 H 0.08 1.95 7.91 -52.48 -0.42 1.53 16
13 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16
14 N -0.77 -18.40 10.96 55.55 0.61 -17.79 16
15 Si 0.91 17.09 29.60 -169.99 -5.03 12.06 16
16 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16
17 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16
18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16
19 C -0.17 -4.17 8.63 -39.29 -0.34 -4.51 16
20 C -0.07 -1.57 9.37 -39.64 -0.37 -1.95 16
21 C 0.08 1.39 10.60 -17.10 -0.18 1.21 16
22 N -0.48 -8.45 9.10 -11.68 -0.11 -8.56 16
23 H 0.09 0.81 8.14 -51.91 -0.42 0.39 16
24 H 0.08 1.03 8.12 -51.92 -0.42 0.61 16
25 H 0.08 1.02 8.12 -51.92 -0.42 0.60 16
26 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16
27 H 0.13 2.03 6.29 -52.49 -0.33 1.70 16
28 H 0.09 1.70 6.23 -52.49 -0.33 1.37 16
29 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16
30 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16
31 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16
32 H 0.09 1.84 6.20 -52.49 -0.33 1.51 16
33 H 0.16 2.65 6.19 -52.49 -0.33 2.33 16
LS Contribution 296.51 15.07 4.47 4.47
Total: -1.00 -25.77 296.51 -9.60 -35.37
By element:
Atomic # 1 Polarization: 11.21 SS G_CDS: -3.29 Total: 7.92 kcal
Atomic # 6 Polarization: -25.76 SS G_CDS: -3.81 Total: -29.57 kcal
Atomic # 7 Polarization: -26.85 SS G_CDS: 0.50 Total: -26.35 kcal
Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal
Atomic # 16 Polarization: -1.46 SS G_CDS: -2.44 Total: -3.90 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -25.77 -9.60 -35.37 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241633060.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.889 kcal
(2) G-P(sol) polarization free energy of solvation -25.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.119 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.519 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds