Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76199 * 99.99968 * 2 1 4 4 C 1.39438 * 119.54618 * 179.97438 * 3 2 1 5 5 C 1.36885 * 119.37941 * 179.69906 * 4 3 2 6 6 C 1.40304 * 118.50058 * 0.58868 * 5 4 3 7 7 C 1.47829 * 120.46929 * 179.70955 * 6 5 4 8 8 C 1.40032 * 119.88605 * 359.44807 * 7 6 5 9 9 C 1.36193 * 120.11117 * 179.76363 * 8 7 6 10 10 C 1.40967 * 119.88231 * 0.48710 * 9 8 7 11 11 C 1.40976 * 120.10754 * 179.74223 * 10 9 8 12 12 H 1.08004 * 120.00303 * 24.73788 * 11 10 9 13 13 C 1.39955 * 120.00256 * 204.73884 * 11 10 9 14 14 N 1.30839 * 119.99429 * 17.97761 * 13 11 10 15 15 Si 1.86791 * 120.00371 * 197.97970 * 13 11 10 16 16 H 1.48508 * 109.47218 * 59.99906 * 15 13 11 17 17 H 1.48501 * 109.47332 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47259 * 299.99740 * 15 13 11 19 19 C 1.40955 * 119.78199 * 359.76486 * 10 9 8 20 20 C 1.36201 * 119.88594 * 359.97438 * 19 10 9 21 21 C 1.39574 * 119.06141 * 359.43273 * 6 5 4 22 22 N 1.31720 * 120.51889 * 0.27868 * 21 6 5 23 23 H 1.09003 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47009 * 299.99350 * 1 2 3 25 25 H 1.08998 * 109.47874 * 59.99689 * 1 2 3 26 26 H 1.08006 * 120.31122 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.74939 * 180.30035 * 5 4 3 28 28 H 1.07991 * 119.94325 * 359.97438 * 8 7 6 29 29 H 1.08000 * 120.06068 * 180.22952 * 9 8 7 30 30 H 0.96999 * 119.99719 * 179.97438 * 14 13 11 31 31 H 1.07998 * 120.05981 * 179.97438 * 19 10 9 32 32 H 1.07999 * 119.94359 * 179.97438 * 20 19 10 33 33 H 1.08001 * 119.73885 * 180.29752 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4299 2.2017 0.0005 5 6 3.6637 3.5505 -0.0057 6 6 2.5632 4.4207 0.0002 7 6 2.7655 5.8851 0.0002 8 6 4.0637 6.4101 0.0061 9 6 4.2554 7.7585 0.0013 10 6 3.1442 8.6259 0.0008 11 6 3.3371 10.0224 0.0014 12 1 4.2528 10.4412 -0.3893 13 6 2.3422 10.8661 0.5082 14 7 1.4091 10.3826 1.2877 15 14 2.3462 12.6824 0.0718 16 1 2.2327 12.8379 -1.4007 17 1 1.1958 13.3522 0.7300 18 1 3.6130 13.3008 0.5387 19 6 1.8395 8.0923 0.0003 20 6 1.6584 6.7424 -0.0003 21 6 1.2746 3.8843 0.0000 22 7 1.0932 2.5796 0.0000 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3635 0.5138 -0.8899 26 1 4.2556 1.5054 0.0014 27 1 4.6725 3.9360 -0.0103 28 1 4.9142 5.7447 0.0109 29 1 5.2570 8.1625 0.0021 30 1 0.7198 10.9675 1.6392 31 1 0.9850 8.7527 0.0003 32 1 0.6591 6.3326 -0.0003 33 1 0.4196 4.5441 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241633060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = 28.413818 kcal Electronic energy + Delta-G solvation = -16895.101947 eV Core-core repulsion = 14203.403028 eV Total energy + Delta-G solvation = -2691.698919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04835 -39.25955 -35.91307 -33.86206 -33.02620 -31.37984 -30.64452 -29.68397 -27.21588 -24.87840 -24.40078 -22.30295 -21.94321 -19.50034 -18.92253 -17.60720 -17.20751 -16.90020 -16.17258 -15.65594 -15.33955 -15.06653 -14.97576 -14.65292 -14.37114 -14.22715 -14.00338 -13.63153 -13.41424 -13.13686 -12.89786 -12.77102 -12.60622 -12.21401 -11.63288 -11.57716 -11.34751 -11.31310 -10.86469 -10.70136 -10.48430 -9.52726 -9.30481 -8.76586 -8.29509 -6.34790 -0.24308 0.34380 0.64357 1.05911 1.18409 1.30778 1.38184 1.49628 1.55907 2.16296 2.56185 2.96039 3.57434 3.74409 3.98051 4.04376 4.12698 4.27409 4.35041 4.37843 4.38943 4.56658 4.78380 4.93832 4.97180 5.03282 5.10284 5.15812 5.30957 5.43882 5.63413 5.66097 5.96721 6.03698 6.16623 6.27249 6.59620 6.79877 6.82078 6.95138 8.19949 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.050884 B = 0.003458 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.143877 B = 8096.037424 C = 8565.483419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.083 6.083 3 C 0.062 3.938 4 C -0.133 4.133 5 C -0.088 4.088 6 C -0.046 4.046 7 C -0.201 4.201 8 C -0.063 4.063 9 C -0.245 4.245 10 C 0.089 3.911 11 C -0.481 4.481 12 H 0.084 0.916 13 C 0.035 3.965 14 N -0.809 5.809 15 Si 0.985 3.015 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.257 1.257 19 C -0.194 4.194 20 C -0.080 4.080 21 C 0.073 3.927 22 N -0.488 5.488 23 H 0.124 0.876 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.293 0.707 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -11.912 -1.806 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.154 5.846 3 C -0.187 4.187 4 C -0.158 4.158 5 C -0.115 4.115 6 C -0.051 4.051 7 C -0.203 4.203 8 C -0.081 4.081 9 C -0.264 4.264 10 C 0.087 3.913 11 C -0.509 4.509 12 H 0.102 0.898 13 C -0.183 4.183 14 N -0.433 5.433 15 Si 0.805 3.195 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.181 1.181 19 C -0.214 4.214 20 C -0.099 4.099 21 C -0.086 4.086 22 N -0.200 5.200 23 H 0.143 0.857 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.177 0.823 27 H 0.171 0.829 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.465 -13.240 -1.644 13.350 hybrid contribution -0.221 2.513 0.041 2.523 sum -0.686 -10.727 -1.603 10.868 Atomic orbital electron populations 1.23391 0.92573 1.07097 1.06191 1.85307 1.09642 0.97217 1.92431 1.23285 0.92405 0.99211 1.03768 1.21555 0.96540 0.96308 1.01437 1.21526 0.99757 0.92499 0.97678 1.19913 0.94392 0.93511 0.97253 1.18179 0.93548 0.90145 1.18467 1.20704 0.95724 0.94725 0.96928 1.20895 0.97600 0.93648 1.14274 1.18099 0.92083 0.93943 0.87220 1.19959 1.03474 0.91945 1.35533 0.89816 1.26875 0.93251 1.06384 0.91741 1.69867 1.11749 1.40441 1.21271 0.85193 0.79320 0.75186 0.79768 1.18364 1.19099 1.18109 1.20961 0.97338 0.94227 1.08826 1.20747 0.97327 0.93385 0.98410 1.22859 0.96559 0.90587 0.98623 1.67857 1.33791 1.04117 1.14246 0.85717 0.90205 0.90126 0.82293 0.82923 0.85696 0.87719 0.89601 0.87819 0.87169 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.63 113.37 1.09 -1.35 16 2 S -0.08 -1.96 22.69 -56.49 -1.28 -3.24 16 3 C 0.06 1.87 6.97 84.86 0.59 2.46 16 4 C -0.13 -3.75 9.77 22.24 0.22 -3.54 16 5 C -0.09 -2.74 9.47 22.45 0.21 -2.52 16 6 C -0.05 -1.70 5.90 -19.91 -0.12 -1.82 16 7 C -0.20 -8.52 5.90 -19.87 -0.12 -8.64 16 8 C -0.06 -2.62 9.37 22.23 0.21 -2.41 16 9 C -0.24 -11.46 9.73 22.46 0.22 -11.24 16 10 C 0.09 4.64 5.57 -21.27 -0.12 4.52 16 11 C -0.48 -24.67 9.03 23.36 0.21 -24.46 16 12 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 13 C 0.03 1.67 5.13 85.26 0.44 2.10 16 14 N -0.81 -40.36 10.96 21.83 0.24 -40.12 16 15 Si 0.99 35.94 29.60 68.60 2.03 37.97 16 16 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 17 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 18 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 19 C -0.19 -9.89 8.63 22.46 0.19 -9.70 16 20 C -0.08 -3.64 9.37 22.23 0.21 -3.43 16 21 C 0.07 2.60 10.60 85.03 0.90 3.51 16 22 N -0.49 -16.34 9.10 -190.85 -1.74 -18.08 16 23 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 25 H 0.08 1.71 8.12 -2.40 -0.02 1.69 16 26 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 27 H 0.15 4.08 6.29 -2.91 -0.02 4.06 16 28 H 0.13 4.29 6.23 -2.92 -0.02 4.27 16 29 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 30 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 31 H 0.10 5.49 6.16 -2.91 -0.02 5.48 16 32 H 0.11 4.44 6.20 -2.91 -0.02 4.42 16 33 H 0.16 5.33 6.19 -2.91 -0.02 5.31 16 Total: -1.00 -56.95 296.51 4.52 -52.43 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.13 Total: 27.55 kcal Atomic # 6 Polarization: -60.65 SS G_CDS: 4.14 Total: -56.51 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -1.50 Total: -58.20 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -1.28 Total: -3.24 kcal Total: -56.95 4.52 -52.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241633060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.841 kcal (2) G-P(sol) polarization free energy of solvation -56.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds