Wall clock time and date at job start Mon Mar 30 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76206 * 103.00328 * 2 1 4 4 C 1.39304 * 119.58360 * 179.97438 * 3 2 1 5 5 C 1.38022 * 119.21797 * 180.02562 * 4 3 2 6 6 C 1.39993 * 118.40802 * 359.97438 * 5 4 3 7 7 C 1.48365 * 120.45062 * 180.02562 * 6 5 4 8 8 C 1.39763 * 119.99694 * 359.72918 * 7 6 5 9 9 C 1.38385 * 120.37377 * 180.27477 * 8 7 6 10 10 C 1.37728 * 120.37867 * 359.97438 * 9 8 7 11 11 C 1.40756 * 119.99867 * 0.02562 * 10 9 8 12 12 C 1.41421 * 120.18951 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00456 * 150.17711 * 12 11 10 14 14 C 1.39930 * 119.99403 * 330.16904 * 12 11 10 15 15 N 1.30841 * 119.99745 * 161.73253 * 14 12 11 16 16 Si 1.86795 * 120.00355 * 341.73981 * 14 12 11 17 17 H 1.48503 * 109.47531 * 95.41076 * 16 14 12 18 18 H 1.48501 * 109.47052 * 215.41049 * 16 14 12 19 19 H 1.48497 * 109.47212 * 335.40793 * 16 14 12 20 20 C 1.38747 * 120.00334 * 179.97438 * 7 6 5 21 21 C 1.39178 * 119.10680 * 0.27774 * 6 5 4 22 22 N 1.31800 * 120.68673 * 359.42952 * 21 6 5 23 23 H 1.09004 * 109.46910 * 300.00254 * 1 2 3 24 24 H 1.08998 * 109.47105 * 60.00065 * 1 2 3 25 25 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.38760 * 0.04175 * 4 3 2 27 27 H 1.07997 * 120.79216 * 180.02562 * 5 4 3 28 28 H 1.07999 * 119.80945 * 0.26997 * 8 7 6 29 29 H 1.07996 * 119.81106 * 179.97438 * 9 8 7 30 30 H 1.08001 * 119.99706 * 179.97438 * 10 9 8 31 31 H 0.97004 * 119.99841 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.19233 * 359.75010 * 20 7 6 33 33 H 1.07999 * 119.65448 * 179.70286 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5455 2.1144 0.0005 5 6 3.8475 3.4612 0.0011 6 6 2.7917 4.3804 0.0005 7 6 3.0645 5.8388 0.0005 8 6 4.3827 6.3031 0.0067 9 6 4.6461 7.6616 0.0125 10 6 3.6122 8.5715 0.0116 11 6 2.2786 8.1214 0.0053 12 6 1.2138 9.0522 0.0038 13 1 0.2750 8.7980 -0.4656 14 6 1.3768 10.3025 0.6106 15 7 0.5627 11.2836 0.3163 16 14 2.7567 10.5709 1.8407 17 1 3.9306 11.1595 1.1473 18 1 2.2962 11.4965 2.9069 19 1 3.1402 9.2703 2.4460 20 6 2.0110 6.7417 -0.0006 21 6 1.4826 3.9079 0.0053 22 7 1.2347 2.6135 -0.0009 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.3350 1.3773 0.0003 27 1 4.8737 3.7977 0.0011 28 1 5.2004 5.5976 0.0072 29 1 5.6682 8.0104 0.0177 30 1 3.8248 9.6304 0.0165 31 1 0.6759 12.1504 0.7367 32 1 0.9912 6.3864 -0.0056 33 1 0.6614 4.6093 0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241634610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:07 Heat of formation + Delta-G solvation = 42.609568 kcal Electronic energy + Delta-G solvation = -17024.050441 eV Core-core repulsion = 14332.967095 eV Total energy + Delta-G solvation = -2691.083346 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92748 -37.74614 -33.99488 -32.70722 -31.85702 -30.44074 -29.06774 -28.46633 -25.45428 -23.79463 -23.36244 -20.82767 -20.38353 -18.10380 -17.51253 -16.24230 -15.98664 -15.19236 -15.11095 -14.53552 -14.28293 -13.83889 -13.66341 -13.36187 -13.34645 -13.00332 -12.75835 -12.47679 -12.11834 -11.79858 -11.62181 -10.99330 -10.91626 -10.59923 -10.56074 -9.94286 -9.83907 -9.80283 -9.61843 -9.33685 -9.21036 -8.03282 -7.79752 -7.09670 -7.02425 -4.58659 0.90465 1.40564 1.49104 2.23470 2.50894 2.62490 3.05060 3.16083 3.25804 3.89614 3.93848 4.48036 4.66612 5.03853 5.06510 5.13588 5.13809 5.19305 5.32079 5.40598 5.70534 5.73756 5.98524 6.03726 6.14843 6.28803 6.39162 6.55225 6.79528 6.83051 7.02015 7.27007 7.44635 7.58623 7.74204 7.85990 7.98866 8.25621 8.52064 8.70314 9.99704 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.004081 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.575693 B = 6859.896795 C = 7447.261521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.099 6.099 3 C 0.099 3.901 4 C -0.145 4.145 5 C -0.063 4.063 6 C -0.065 4.065 7 C -0.027 4.027 8 C -0.226 4.226 9 C -0.078 4.078 10 C -0.229 4.229 11 C 0.091 3.909 12 C -0.448 4.448 13 H 0.092 0.908 14 C 0.085 3.915 15 N -0.806 5.806 16 Si 0.910 3.090 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.244 1.244 20 C -0.186 4.186 21 C 0.113 3.887 22 N -0.487 5.487 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.286 0.714 32 H 0.106 0.894 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -14.634 0.731 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.138 5.862 3 C -0.149 4.149 4 C -0.171 4.171 5 C -0.090 4.090 6 C -0.069 4.069 7 C -0.028 4.028 8 C -0.245 4.245 9 C -0.097 4.097 10 C -0.249 4.249 11 C 0.088 3.912 12 C -0.476 4.476 13 H 0.110 0.890 14 C -0.135 4.135 15 N -0.430 5.430 16 Si 0.737 3.263 17 H -0.196 1.196 18 H -0.217 1.217 19 H -0.167 1.167 20 C -0.205 4.205 21 C -0.047 4.047 22 N -0.198 5.198 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.153 0.847 27 H 0.159 0.841 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.241 -15.723 0.732 16.070 hybrid contribution 0.564 1.833 0.488 1.978 sum 3.804 -13.890 1.220 14.453 Atomic orbital electron populations 1.23387 0.93644 1.05647 1.06777 1.85269 1.08020 1.00364 1.92502 1.22831 0.92216 0.97710 1.02125 1.21500 0.95465 0.96650 1.03500 1.21612 0.99997 0.91683 0.95694 1.20061 0.93727 0.94631 0.98514 1.18243 0.94222 0.88799 1.01564 1.20399 0.94289 0.94803 1.15051 1.20540 0.97356 0.93160 0.98614 1.21150 0.93225 0.97937 1.12564 1.17641 0.92293 0.92052 0.89182 1.19490 1.00287 0.96346 1.31503 0.89016 1.26152 0.96450 0.94531 0.96330 1.69700 1.35427 1.02376 1.35450 0.86322 0.80224 0.79848 0.79930 1.19594 1.21720 1.16722 1.21122 0.96507 0.92690 1.10170 1.22943 0.96173 0.90807 0.94752 1.67920 1.34691 1.02796 1.14440 0.89530 0.89523 0.88268 0.84730 0.84104 0.88448 0.88473 0.88050 0.90353 0.87634 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 10.01 101.05 1.01 -0.25 16 2 S -0.10 -1.20 22.55 -107.50 -2.42 -3.63 16 3 C 0.10 1.48 7.00 -16.86 -0.12 1.36 16 4 C -0.15 -2.02 9.82 -39.26 -0.39 -2.41 16 5 C -0.06 -0.95 9.52 -39.00 -0.37 -1.32 16 6 C -0.06 -1.14 5.89 -104.72 -0.62 -1.75 16 7 C -0.03 -0.55 5.87 -104.97 -0.62 -1.17 16 8 C -0.23 -4.42 9.45 -38.96 -0.37 -4.78 16 9 C -0.08 -1.61 10.01 -39.71 -0.40 -2.01 16 10 C -0.23 -5.32 7.17 -38.82 -0.28 -5.60 16 11 C 0.09 2.23 5.10 -106.87 -0.55 1.68 16 12 C -0.45 -11.73 9.57 -37.74 -0.36 -12.09 16 13 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 14 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 15 N -0.81 -21.00 13.93 55.55 0.77 -20.23 16 16 Si 0.91 20.25 24.52 -169.99 -4.17 16.08 16 17 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16 18 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.24 -5.57 6.86 56.52 0.39 -5.18 16 20 C -0.19 -4.10 9.18 -38.53 -0.35 -4.46 16 21 C 0.11 1.93 10.59 -17.22 -0.18 1.75 16 22 N -0.49 -7.95 9.40 -11.82 -0.11 -8.06 16 23 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 27 H 0.14 1.84 6.30 -52.49 -0.33 1.51 16 28 H 0.10 1.61 6.24 -52.49 -0.33 1.29 16 29 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.10 2.35 4.72 -52.49 -0.25 2.10 16 31 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 32 H 0.11 2.17 6.21 -52.49 -0.33 1.84 16 33 H 0.16 2.65 6.20 -52.49 -0.33 2.33 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -27.16 292.22 -8.47 -35.62 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.26 Total: 4.79 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -3.68 Total: -28.98 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.66 Total: -28.29 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.42 Total: -3.63 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.16 -8.47 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241634610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.233 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds