Wall clock time and date at job start Mon Mar 30 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76206 * 103.00328 * 2 1 4 4 C 1.39304 * 119.58360 * 179.97438 * 3 2 1 5 5 C 1.38022 * 119.21797 * 180.02562 * 4 3 2 6 6 C 1.39993 * 118.40802 * 359.97438 * 5 4 3 7 7 C 1.48365 * 120.45062 * 180.02562 * 6 5 4 8 8 C 1.39763 * 119.99694 * 359.72918 * 7 6 5 9 9 C 1.38385 * 120.37377 * 180.27477 * 8 7 6 10 10 C 1.37728 * 120.37867 * 359.97438 * 9 8 7 11 11 C 1.40756 * 119.99867 * 0.02562 * 10 9 8 12 12 C 1.41421 * 120.18951 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00456 * 150.17711 * 12 11 10 14 14 C 1.39930 * 119.99403 * 330.16904 * 12 11 10 15 15 N 1.30841 * 119.99745 * 161.73253 * 14 12 11 16 16 Si 1.86795 * 120.00355 * 341.73981 * 14 12 11 17 17 H 1.48503 * 109.47531 * 95.41076 * 16 14 12 18 18 H 1.48501 * 109.47052 * 215.41049 * 16 14 12 19 19 H 1.48497 * 109.47212 * 335.40793 * 16 14 12 20 20 C 1.38747 * 120.00334 * 179.97438 * 7 6 5 21 21 C 1.39178 * 119.10680 * 0.27774 * 6 5 4 22 22 N 1.31800 * 120.68673 * 359.42952 * 21 6 5 23 23 H 1.09004 * 109.46910 * 300.00254 * 1 2 3 24 24 H 1.08998 * 109.47105 * 60.00065 * 1 2 3 25 25 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.38760 * 0.04175 * 4 3 2 27 27 H 1.07997 * 120.79216 * 180.02562 * 5 4 3 28 28 H 1.07999 * 119.80945 * 0.26997 * 8 7 6 29 29 H 1.07996 * 119.81106 * 179.97438 * 9 8 7 30 30 H 1.08001 * 119.99706 * 179.97438 * 10 9 8 31 31 H 0.97004 * 119.99841 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.19233 * 359.75010 * 20 7 6 33 33 H 1.07999 * 119.65448 * 179.70286 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5455 2.1144 0.0005 5 6 3.8475 3.4612 0.0011 6 6 2.7917 4.3804 0.0005 7 6 3.0645 5.8388 0.0005 8 6 4.3827 6.3031 0.0067 9 6 4.6461 7.6616 0.0125 10 6 3.6122 8.5715 0.0116 11 6 2.2786 8.1214 0.0053 12 6 1.2138 9.0522 0.0038 13 1 0.2750 8.7980 -0.4656 14 6 1.3768 10.3025 0.6106 15 7 0.5627 11.2836 0.3163 16 14 2.7567 10.5709 1.8407 17 1 3.9306 11.1595 1.1473 18 1 2.2962 11.4965 2.9069 19 1 3.1402 9.2703 2.4460 20 6 2.0110 6.7417 -0.0006 21 6 1.4826 3.9079 0.0053 22 7 1.2347 2.6135 -0.0009 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.3350 1.3773 0.0003 27 1 4.8737 3.7977 0.0011 28 1 5.2004 5.5976 0.0072 29 1 5.6682 8.0104 0.0177 30 1 3.8248 9.6304 0.0165 31 1 0.6759 12.1504 0.7367 32 1 0.9912 6.3864 -0.0056 33 1 0.6614 4.6093 0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241634610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:07 Heat of formation + Delta-G solvation = 28.443519 kcal Electronic energy + Delta-G solvation = -17024.664727 eV Core-core repulsion = 14332.967095 eV Total energy + Delta-G solvation = -2691.697631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19126 -39.37911 -35.74084 -34.17808 -33.11492 -32.16298 -30.21025 -29.63111 -27.21295 -25.15002 -24.69511 -22.36964 -22.06031 -19.35105 -19.14861 -17.79777 -17.31991 -16.62210 -16.59071 -15.85595 -15.44810 -15.42473 -14.97467 -14.58146 -14.50483 -14.39322 -14.29852 -13.83914 -13.61683 -13.23576 -13.02982 -12.72673 -12.56294 -12.25914 -11.67395 -11.59043 -11.47680 -11.28578 -10.97156 -10.77408 -10.58561 -9.56423 -9.38693 -8.90692 -8.33999 -6.52890 -0.40774 0.22924 0.48641 0.78890 1.03507 1.26030 1.29518 1.40648 1.48805 2.11222 2.49043 2.81955 3.47129 3.53613 3.76194 3.93664 4.01009 4.13310 4.31136 4.33898 4.35865 4.50100 4.66639 4.71037 4.84014 4.92312 4.95571 5.01834 5.20278 5.26276 5.55968 5.57249 5.77566 5.86849 5.95385 6.20747 6.36818 6.68880 6.70691 6.80945 8.18168 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.004081 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.575693 B = 6859.896795 C = 7447.261521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.077 6.077 3 C 0.088 3.912 4 C -0.143 4.143 5 C -0.052 4.052 6 C -0.093 4.093 7 C -0.022 4.022 8 C -0.209 4.209 9 C -0.081 4.081 10 C -0.246 4.246 11 C 0.073 3.927 12 C -0.489 4.489 13 H 0.055 0.945 14 C 0.048 3.952 15 N -0.852 5.852 16 Si 0.965 3.035 17 H -0.255 1.255 18 H -0.279 1.279 19 H -0.253 1.253 20 C -0.205 4.205 21 C 0.104 3.896 22 N -0.502 5.502 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.098 0.902 31 H 0.293 0.707 32 H 0.104 0.896 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -17.718 1.277 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.162 5.838 3 C -0.160 4.160 4 C -0.168 4.168 5 C -0.078 4.078 6 C -0.098 4.098 7 C -0.023 4.023 8 C -0.227 4.227 9 C -0.099 4.099 10 C -0.265 4.265 11 C 0.070 3.930 12 C -0.519 4.519 13 H 0.073 0.927 14 C -0.166 4.166 15 N -0.478 5.478 16 Si 0.788 3.212 17 H -0.180 1.180 18 H -0.206 1.206 19 H -0.177 1.177 20 C -0.225 4.225 21 C -0.056 4.056 22 N -0.215 5.215 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.148 0.852 26 H 0.186 0.814 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.382 -18.818 1.269 19.911 hybrid contribution -0.368 2.337 0.245 2.378 sum 6.015 -16.481 1.515 17.610 Atomic orbital electron populations 1.23502 0.92321 1.07479 1.06191 1.85205 1.09460 0.97518 1.91658 1.23519 0.92880 0.99133 1.00469 1.21886 0.95842 0.96960 1.02137 1.21892 1.00366 0.91665 0.93893 1.19939 0.94734 0.93505 1.01587 1.18512 0.94041 0.90134 0.99645 1.20962 0.95041 0.95294 1.11437 1.20973 0.98438 0.93237 0.97274 1.21283 0.93314 0.98557 1.13360 1.17775 0.92631 0.92662 0.89894 1.19466 0.99958 0.98190 1.34250 0.92705 1.26812 0.98533 0.93947 0.97340 1.69736 1.37606 1.03095 1.37383 0.85492 0.78209 0.79349 0.78107 1.18017 1.20563 1.17678 1.21262 0.97608 0.92511 1.11097 1.22906 0.96251 0.91340 0.95091 1.67963 1.35520 1.02564 1.15404 0.90115 0.90115 0.85224 0.81360 0.81453 0.84208 0.84744 0.88426 0.89630 0.87841 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 10.01 113.37 1.13 -1.09 16 2 S -0.08 -1.61 22.55 -56.49 -1.27 -2.88 16 3 C 0.09 2.39 7.00 84.85 0.59 2.99 16 4 C -0.14 -3.39 9.82 22.47 0.22 -3.17 16 5 C -0.05 -1.34 9.52 22.64 0.22 -1.12 16 6 C -0.09 -3.08 5.89 -19.93 -0.12 -3.20 16 7 C -0.02 -0.87 5.87 -20.09 -0.12 -0.99 16 8 C -0.21 -7.35 9.45 22.67 0.21 -7.14 16 9 C -0.08 -3.09 10.01 22.18 0.22 -2.87 16 10 C -0.25 -11.28 7.17 22.76 0.16 -11.11 16 11 C 0.07 3.67 5.10 -21.32 -0.11 3.56 16 12 C -0.49 -27.51 9.57 23.46 0.22 -27.28 16 13 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 14 C 0.05 2.57 5.40 85.25 0.46 3.03 16 15 N -0.85 -46.99 13.93 21.82 0.30 -46.68 16 16 Si 0.97 42.51 24.52 68.60 1.68 44.19 16 17 H -0.26 -10.49 6.71 99.48 0.67 -9.82 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.25 -11.35 6.86 99.48 0.68 -10.67 16 20 C -0.21 -9.35 9.18 22.95 0.21 -9.14 16 21 C 0.10 3.50 10.59 84.92 0.90 4.40 16 22 N -0.50 -15.81 9.40 -191.30 -1.80 -17.61 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.17 3.36 6.30 -2.91 -0.02 3.35 16 28 H 0.14 3.75 6.24 -2.91 -0.02 3.73 16 29 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.10 4.48 4.72 -2.91 -0.01 4.47 16 31 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 32 H 0.10 4.58 6.21 -2.91 -0.02 4.57 16 33 H 0.16 5.30 6.20 -2.91 -0.02 5.28 16 Total: -1.00 -61.82 292.22 4.20 -57.62 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.07 Total: 18.49 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 4.22 Total: -53.13 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -1.50 Total: -64.29 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.68 Total: 44.19 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -1.27 Total: -2.88 kcal Total: -61.82 4.20 -57.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241634610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.060 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds