Wall clock time and date at job start Mon Mar 30 2020 00:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76204 * 102.99868 * 2 1 4 4 C 1.38925 * 120.17470 * 0.02562 * 3 2 1 5 5 C 1.38020 * 120.05949 * 180.02562 * 4 3 2 6 6 C 1.38621 * 120.41378 * 359.97438 * 5 4 3 7 7 C 1.37817 * 120.35291 * 359.67746 * 6 5 4 8 8 C 1.39654 * 119.92672 * 0.62440 * 7 6 5 9 9 C 1.47679 * 120.19876 * 179.67906 * 8 7 6 10 10 C 1.40042 * 119.46641 * 359.72242 * 9 8 7 11 11 C 1.36512 * 119.46865 * 180.02562 * 10 9 8 12 12 C 1.41359 * 118.42088 * 0.24938 * 11 10 9 13 13 C 1.41001 * 120.53868 * 179.75199 * 12 11 10 14 14 H 1.07997 * 119.99657 * 203.72896 * 13 12 11 15 15 C 1.39968 * 120.00070 * 23.73277 * 13 12 11 16 16 N 1.30822 * 120.00205 * 17.65223 * 15 13 12 17 17 Si 1.86807 * 119.99888 * 197.65002 * 15 13 12 18 18 H 1.48500 * 109.46743 * 60.00049 * 17 15 13 19 19 H 1.48498 * 109.46856 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46810 * 299.99798 * 17 15 13 21 21 C 1.40961 * 118.91713 * 359.52452 * 12 11 10 22 22 N 1.31245 * 120.41099 * 0.48790 * 21 12 11 23 23 H 1.09000 * 109.47427 * 299.99798 * 1 2 3 24 24 H 1.09001 * 109.47504 * 60.00377 * 1 2 3 25 25 H 1.09006 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.97383 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.79154 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.82400 * 180.02562 * 6 5 4 29 29 H 1.07998 * 120.03136 * 180.32711 * 7 6 5 30 30 H 1.08004 * 120.27015 * 359.97438 * 10 9 8 31 31 H 1.07997 * 120.78909 * 179.97438 * 11 10 9 32 32 H 0.97006 * 120.00023 * 180.02562 * 16 15 13 33 33 H 1.08000 * 119.79930 * 180.22825 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1971 2.6674 0.0005 5 6 1.5103 4.0116 0.0000 6 6 2.8338 4.4239 -0.0005 7 6 3.8524 3.4955 0.0061 8 6 3.5520 2.1317 0.0003 9 6 4.6388 1.1317 0.0003 10 6 5.9713 1.5625 0.0002 11 6 6.9759 0.6383 -0.0003 12 6 6.6293 -0.7321 -0.0063 13 6 7.6310 -1.7245 -0.0123 14 1 7.4114 -2.7110 -0.3930 15 6 8.9098 -1.4310 0.4751 16 7 9.0946 -0.3856 1.2395 17 14 10.3529 -2.5323 0.0341 18 1 10.5270 -2.5532 -1.4405 19 1 11.5878 -2.0090 0.6715 20 1 10.0908 -3.9104 0.5213 21 6 5.2660 -1.0904 -0.0011 22 7 4.3358 -0.1646 -0.0006 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.1635 2.3543 0.0005 27 1 0.7192 4.7469 0.0000 28 1 3.0680 5.4782 -0.0005 29 1 4.8816 3.8225 0.0110 30 1 6.2024 2.6176 -0.0002 31 1 8.0109 0.9467 -0.0008 32 1 9.9809 -0.1820 1.5769 33 1 4.9851 -2.1333 -0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242942576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:22 Heat of formation + Delta-G solvation = 45.159433 kcal Electronic energy + Delta-G solvation = -17334.014174 eV Core-core repulsion = 14643.041399 eV Total energy + Delta-G solvation = -2690.972775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.01403 -37.73569 -34.38669 -31.75128 -31.09573 -30.51172 -29.02741 -28.23775 -25.57093 -22.92095 -22.54995 -20.99284 -20.46689 -17.60078 -17.20795 -15.94135 -15.61625 -15.00709 -14.53924 -14.17247 -13.80293 -13.51064 -13.46628 -13.36668 -12.84643 -12.77671 -12.20065 -12.05549 -11.84705 -11.74786 -11.41055 -11.33811 -10.81189 -10.79217 -10.60754 -10.05860 -9.60144 -9.45060 -9.19289 -8.75217 -8.40659 -7.84008 -7.49479 -7.06119 -6.57731 -4.60582 1.49927 1.76324 2.31866 2.64457 2.89662 2.91896 2.94042 3.12401 3.25036 3.69331 4.13776 4.55974 5.23243 5.31047 5.34209 5.47666 5.49457 5.57103 5.78672 5.84163 6.00163 6.06022 6.22202 6.40498 6.50048 6.59953 6.66891 6.78304 6.87786 6.91970 7.04964 7.17225 7.34282 7.62842 7.71767 7.81489 8.25191 8.44220 8.54749 9.46141 9.81147 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004932 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.775393 B = 5675.965723 C = 6536.574701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 S 0.021 5.979 3 C -0.099 4.099 4 C -0.133 4.133 5 C -0.132 4.132 6 C -0.126 4.126 7 C -0.117 4.117 8 C 0.030 3.970 9 C -0.016 4.016 10 C -0.116 4.116 11 C -0.144 4.144 12 C 0.071 3.929 13 C -0.429 4.429 14 H 0.088 0.912 15 C 0.072 3.928 16 N -0.773 5.773 17 Si 0.917 3.083 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.011 4.011 22 N -0.426 5.426 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.288 0.712 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 3.906 -1.548 7.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.391 4.391 2 S 0.264 5.736 3 C -0.214 4.214 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.147 4.147 7 C -0.138 4.138 8 C 0.023 3.977 9 C -0.149 4.149 10 C -0.137 4.137 11 C -0.169 4.169 12 C 0.066 3.934 13 C -0.458 4.458 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.396 5.396 17 Si 0.740 3.260 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.176 4.176 22 N -0.133 5.133 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.727 2.701 -1.391 7.381 hybrid contribution 0.719 1.092 -0.035 1.308 sum -6.008 3.794 -1.425 7.247 Atomic orbital electron populations 1.24251 1.05876 1.05274 1.03655 1.87427 0.95445 1.00346 1.90360 1.22116 0.95519 0.98048 1.05690 1.20965 0.97613 0.93160 1.04059 1.20831 0.96220 0.95001 1.03205 1.20891 0.92736 0.98810 1.02269 1.21103 0.99238 0.91664 1.01761 1.18354 0.90083 0.92271 0.96942 1.18760 0.90354 0.89421 1.16326 1.21259 0.93109 0.98734 1.00559 1.21317 0.98812 0.92584 1.04143 1.18604 0.93071 0.93340 0.88404 1.19665 0.93999 0.98873 1.33215 0.89376 1.26103 1.00794 0.95664 0.92378 1.69790 1.25258 1.23936 1.20633 0.86200 0.78881 0.80623 0.80264 1.18425 1.20015 1.18533 1.22403 0.88579 0.96561 1.10081 1.65904 1.37259 1.00748 1.09386 0.91435 0.91463 0.88899 0.86670 0.86894 0.86649 0.85813 0.87992 0.85492 0.90037 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.10 9.15 101.05 0.92 -2.18 16 2 S 0.02 0.39 19.08 -107.50 -2.05 -1.66 16 3 C -0.10 -1.94 6.16 -38.50 -0.24 -2.18 16 4 C -0.13 -2.21 9.36 -39.41 -0.37 -2.57 16 5 C -0.13 -1.98 10.03 -39.52 -0.40 -2.38 16 6 C -0.13 -1.93 10.02 -39.59 -0.40 -2.33 16 7 C -0.12 -2.09 9.41 -39.21 -0.37 -2.46 16 8 C 0.03 0.63 5.90 -104.68 -0.62 0.02 16 9 C -0.02 -0.37 6.73 -82.77 -0.56 -0.93 16 10 C -0.12 -2.68 9.38 -39.53 -0.37 -3.05 16 11 C -0.14 -3.55 8.74 -39.02 -0.34 -3.89 16 12 C 0.07 1.78 5.59 -106.63 -0.60 1.19 16 13 C -0.43 -10.40 9.06 -37.89 -0.34 -10.74 16 14 H 0.09 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.07 1.64 5.17 -17.33 -0.09 1.55 16 16 N -0.77 -18.32 10.92 55.55 0.61 -17.72 16 17 Si 0.92 16.95 29.60 -169.99 -5.03 11.92 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 C -0.01 -0.26 10.97 -16.77 -0.18 -0.45 16 22 N -0.43 -10.27 6.57 -9.13 -0.06 -10.33 16 23 H 0.07 0.89 7.75 -51.92 -0.40 0.48 16 24 H 0.07 0.88 7.75 -51.92 -0.40 0.47 16 25 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 26 H 0.12 1.65 5.89 -52.48 -0.31 1.34 16 27 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.12 2.04 6.15 -52.49 -0.32 1.72 16 30 H 0.10 2.06 6.15 -52.48 -0.32 1.73 16 31 H 0.13 3.15 6.19 -52.49 -0.32 2.82 16 32 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 33 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 291.56 15.07 4.39 4.39 Total: -1.00 -26.57 291.56 -9.41 -35.97 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -3.33 Total: 7.82 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -3.94 Total: -30.39 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.55 Total: -28.05 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.05 Total: -1.66 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.57 -9.41 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242942576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.134 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds