Wall clock time and date at job start Mon Mar 30 2020 00:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76204 * 102.99868 * 2 1 4 4 C 1.38925 * 120.17470 * 0.02562 * 3 2 1 5 5 C 1.38020 * 120.05949 * 180.02562 * 4 3 2 6 6 C 1.38621 * 120.41378 * 359.97438 * 5 4 3 7 7 C 1.37817 * 120.35291 * 359.67746 * 6 5 4 8 8 C 1.39654 * 119.92672 * 0.62440 * 7 6 5 9 9 C 1.47679 * 120.19876 * 179.67906 * 8 7 6 10 10 C 1.40042 * 119.46641 * 359.72242 * 9 8 7 11 11 C 1.36512 * 119.46865 * 180.02562 * 10 9 8 12 12 C 1.41359 * 118.42088 * 0.24938 * 11 10 9 13 13 C 1.41001 * 120.53868 * 179.75199 * 12 11 10 14 14 H 1.07997 * 119.99657 * 203.72896 * 13 12 11 15 15 C 1.39968 * 120.00070 * 23.73277 * 13 12 11 16 16 N 1.30822 * 120.00205 * 17.65223 * 15 13 12 17 17 Si 1.86807 * 119.99888 * 197.65002 * 15 13 12 18 18 H 1.48500 * 109.46743 * 60.00049 * 17 15 13 19 19 H 1.48498 * 109.46856 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46810 * 299.99798 * 17 15 13 21 21 C 1.40961 * 118.91713 * 359.52452 * 12 11 10 22 22 N 1.31245 * 120.41099 * 0.48790 * 21 12 11 23 23 H 1.09000 * 109.47427 * 299.99798 * 1 2 3 24 24 H 1.09001 * 109.47504 * 60.00377 * 1 2 3 25 25 H 1.09006 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.97383 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.79154 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.82400 * 180.02562 * 6 5 4 29 29 H 1.07998 * 120.03136 * 180.32711 * 7 6 5 30 30 H 1.08004 * 120.27015 * 359.97438 * 10 9 8 31 31 H 1.07997 * 120.78909 * 179.97438 * 11 10 9 32 32 H 0.97006 * 120.00023 * 180.02562 * 16 15 13 33 33 H 1.08000 * 119.79930 * 180.22825 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1971 2.6674 0.0005 5 6 1.5103 4.0116 0.0000 6 6 2.8338 4.4239 -0.0005 7 6 3.8524 3.4955 0.0061 8 6 3.5520 2.1317 0.0003 9 6 4.6388 1.1317 0.0003 10 6 5.9713 1.5625 0.0002 11 6 6.9759 0.6383 -0.0003 12 6 6.6293 -0.7321 -0.0063 13 6 7.6310 -1.7245 -0.0123 14 1 7.4114 -2.7110 -0.3930 15 6 8.9098 -1.4310 0.4751 16 7 9.0946 -0.3856 1.2395 17 14 10.3529 -2.5323 0.0341 18 1 10.5270 -2.5532 -1.4405 19 1 11.5878 -2.0090 0.6715 20 1 10.0908 -3.9104 0.5213 21 6 5.2660 -1.0904 -0.0011 22 7 4.3358 -0.1646 -0.0006 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.1635 2.3543 0.0005 27 1 0.7192 4.7469 0.0000 28 1 3.0680 5.4782 -0.0005 29 1 4.8816 3.8225 0.0110 30 1 6.2024 2.6176 -0.0002 31 1 8.0109 0.9467 -0.0008 32 1 9.9809 -0.1820 1.5769 33 1 4.9851 -2.1333 -0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242942576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:22 Heat of formation + Delta-G solvation = 33.342518 kcal Electronic energy + Delta-G solvation = -17334.526594 eV Core-core repulsion = 14643.041399 eV Total energy + Delta-G solvation = -2691.485195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62611 -39.24978 -36.11905 -33.31520 -32.77320 -31.94349 -30.65617 -29.41809 -27.27388 -24.49461 -24.10801 -22.58204 -22.04504 -19.38570 -18.63232 -17.40367 -17.27396 -16.63110 -16.00070 -15.72004 -15.27970 -14.90707 -14.86860 -14.73435 -14.36793 -14.22520 -13.73843 -13.56918 -13.41676 -13.16081 -13.07720 -12.82001 -12.28070 -12.19234 -11.96972 -11.75910 -11.27286 -10.93119 -10.55922 -10.27287 -10.22358 -9.50782 -9.14940 -8.76383 -8.05732 -6.43386 0.01839 0.44897 0.96659 0.97930 1.14628 1.38720 1.50883 1.58388 1.95130 2.15083 2.59328 2.98797 3.73451 3.76534 3.96072 4.16448 4.38718 4.40203 4.41888 4.44564 4.57429 4.73313 4.77644 4.91912 4.96268 4.97210 5.09227 5.15742 5.31627 5.41592 5.57465 5.62092 5.79548 5.91583 5.99738 6.13712 6.42998 6.64945 6.72600 7.65151 8.13327 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004932 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.775393 B = 5675.965723 C = 6536.574701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 S -0.055 6.055 3 C -0.108 4.108 4 C -0.139 4.139 5 C -0.115 4.115 6 C -0.121 4.121 7 C -0.122 4.122 8 C -0.015 4.015 9 C -0.021 4.021 10 C -0.124 4.124 11 C -0.161 4.161 12 C 0.045 3.955 13 C -0.462 4.462 14 H 0.091 0.909 15 C 0.036 3.964 16 N -0.806 5.806 17 Si 0.991 3.009 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.256 1.256 21 C -0.035 4.035 22 N -0.431 5.431 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.297 0.703 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 5.746 -1.725 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.366 4.366 2 S 0.189 5.811 3 C -0.223 4.223 4 C -0.163 4.163 5 C -0.135 4.135 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.022 4.022 9 C -0.156 4.156 10 C -0.144 4.144 11 C -0.186 4.186 12 C 0.040 3.960 13 C -0.490 4.490 14 H 0.110 0.890 15 C -0.183 4.183 16 N -0.430 5.430 17 Si 0.811 3.189 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.180 1.180 21 C -0.199 4.199 22 N -0.138 5.138 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.127 0.873 26 H 0.157 0.843 27 H 0.174 0.826 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.391 4.538 -1.565 9.667 hybrid contribution 0.920 0.744 0.033 1.184 sum -7.471 5.282 -1.532 9.277 Atomic orbital electron populations 1.24146 1.00677 1.06838 1.04932 1.87499 1.00858 1.02080 1.90698 1.22244 0.95800 0.98117 1.06097 1.21336 0.98063 0.93478 1.03404 1.21389 0.97258 0.95094 0.99763 1.21345 0.92264 1.00213 1.00362 1.21334 1.00648 0.90948 1.01290 1.18493 0.90161 0.92958 1.00578 1.19379 0.91538 0.89968 1.14682 1.21532 0.92942 0.99766 1.00153 1.21352 0.98847 0.92995 1.05417 1.18902 0.93782 0.94035 0.89307 1.19920 0.95191 0.99099 1.34824 0.89048 1.26957 1.02831 0.96994 0.91489 1.69828 1.26344 1.25468 1.21321 0.85099 0.75359 0.78620 0.79849 1.18221 1.18933 1.17977 1.22597 0.88761 0.97238 1.11309 1.66240 1.37135 1.01099 1.09297 0.90111 0.90034 0.87274 0.84269 0.82613 0.82800 0.85199 0.85592 0.86270 0.89219 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.02 9.15 113.37 1.04 -3.98 16 2 S -0.06 -2.10 19.08 -56.49 -1.08 -3.17 16 3 C -0.11 -4.13 6.16 22.97 0.14 -3.99 16 4 C -0.14 -4.11 9.36 22.38 0.21 -3.90 16 5 C -0.12 -2.87 10.03 22.31 0.22 -2.65 16 6 C -0.12 -3.21 10.02 22.26 0.22 -2.98 16 7 C -0.12 -4.15 9.41 22.51 0.21 -3.93 16 8 C -0.02 -0.63 5.90 -19.90 -0.12 -0.75 16 9 C -0.02 -1.03 6.73 41.88 0.28 -0.75 16 10 C -0.12 -5.92 9.38 22.30 0.21 -5.71 16 11 C -0.16 -8.37 8.74 22.63 0.20 -8.17 16 12 C 0.04 2.38 5.59 -21.17 -0.12 2.26 16 13 C -0.46 -23.54 9.06 23.37 0.21 -23.32 16 14 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 15 C 0.04 1.67 5.17 85.26 0.44 2.11 16 16 N -0.81 -39.46 10.92 21.83 0.24 -39.22 16 17 Si 0.99 35.16 29.60 68.60 2.03 37.19 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 19 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 20 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 21 C -0.04 -1.82 10.97 85.45 0.94 -0.88 16 22 N -0.43 -21.77 6.57 -182.79 -1.20 -22.97 16 23 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 24 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 25 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.14 3.38 5.89 -2.91 -0.02 3.36 16 27 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.13 4.12 6.15 -2.91 -0.02 4.10 16 30 H 0.13 5.18 6.15 -2.91 -0.02 5.16 16 31 H 0.12 6.24 6.19 -2.91 -0.02 6.23 16 32 H 0.30 12.97 8.30 -92.70 -0.77 12.20 16 33 H 0.14 6.57 8.06 -2.91 -0.02 6.55 16 Total: -1.00 -61.03 291.56 5.21 -55.82 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 1.13 Total: 29.03 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 4.09 Total: -56.66 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.96 Total: -62.20 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.08 Total: -3.17 kcal Total: -61.03 5.21 -55.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242942576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.160 kcal (2) G-P(sol) polarization free energy of solvation -61.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds