Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76194 * 103.00354 * 2 1 4 4 C 1.38921 * 120.17595 * 0.02562 * 3 2 1 5 5 C 1.38037 * 120.05845 * 179.70672 * 4 3 2 6 6 C 1.38638 * 120.42976 * 0.28942 * 5 4 3 7 7 C 1.37801 * 120.36043 * 359.97438 * 6 5 4 8 8 C 1.39703 * 119.92580 * 359.97438 * 7 6 5 9 9 C 1.47577 * 120.20700 * 180.02562 * 8 7 6 10 10 C 1.39491 * 120.80089 * 65.00081 * 9 8 7 11 11 N 1.31601 * 120.63731 * 180.02562 * 10 9 8 12 12 C 1.32273 * 122.52355 * 359.97438 * 11 10 9 13 13 C 1.36398 * 121.55011 * 359.97438 * 12 11 10 14 14 C 1.41164 * 119.12333 * 359.73985 * 13 12 11 15 15 C 1.40805 * 121.11945 * 180.26335 * 14 13 12 16 16 H 1.08002 * 119.99920 * 204.52035 * 15 14 13 17 17 C 1.40131 * 119.99966 * 24.50827 * 15 14 13 18 18 N 1.30713 * 119.99873 * 14.04817 * 17 15 14 19 19 Si 1.86799 * 119.99760 * 194.04176 * 17 15 14 20 20 H 1.48495 * 109.47196 * 94.98339 * 19 17 15 21 21 H 1.48500 * 109.46965 * 214.97745 * 19 17 15 22 22 H 1.48499 * 109.47503 * 334.97960 * 19 17 15 23 23 H 1.09005 * 109.47178 * 59.99597 * 1 2 3 24 24 H 1.08996 * 109.47704 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46782 * 300.00419 * 1 2 3 26 26 H 1.07993 * 119.96643 * 359.97424 * 4 3 2 27 27 H 1.08000 * 119.78196 * 180.27832 * 5 4 3 28 28 H 1.08002 * 119.82158 * 179.97438 * 6 5 4 29 29 H 1.07997 * 120.03246 * 180.02562 * 7 6 5 30 30 H 1.08004 * 119.67761 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.22457 * 179.97438 * 12 11 10 32 32 H 1.07998 * 120.44123 * 179.97438 * 13 12 11 33 33 H 0.97003 * 119.99360 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1974 2.6674 0.0005 5 6 1.5108 4.0117 0.0067 6 6 2.8344 4.4242 0.0063 7 6 3.8531 3.4962 0.0003 8 6 3.5530 2.1318 -0.0049 9 6 4.6391 1.1327 -0.0107 10 6 5.5093 1.0173 1.0733 11 7 6.4771 0.1255 1.0645 12 6 6.6768 -0.6971 0.0481 13 6 5.8825 -0.6681 -1.0603 14 6 4.8195 0.2589 -1.1196 15 6 3.9702 0.3213 -2.2410 16 1 3.4421 1.2356 -2.4682 17 6 3.8105 -0.8027 -3.0624 18 7 4.2176 -1.9751 -2.6522 19 14 3.0156 -0.6255 -4.7436 20 1 4.0710 -0.4613 -5.7753 21 1 2.2153 -1.8399 -5.0432 22 1 2.1287 0.5656 -4.7488 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1639 2.3543 0.0005 27 1 0.7197 4.7469 0.0116 28 1 3.0684 5.4785 0.0107 29 1 4.8823 3.8235 0.0004 30 1 5.3876 1.6661 1.9282 31 1 7.4880 -1.4084 0.0971 32 1 6.0621 -1.3478 -1.8801 33 1 4.1066 -2.7532 -3.2207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242943350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = 33.772546 kcal Electronic energy + Delta-G solvation = -18098.326151 eV Core-core repulsion = 15406.859603 eV Total energy + Delta-G solvation = -2691.466548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50003 -39.17015 -35.99061 -33.72620 -32.16667 -31.85747 -29.84577 -29.54536 -27.76304 -24.32741 -23.66093 -23.02164 -21.74887 -19.42887 -18.36427 -17.41913 -17.03690 -16.35298 -16.12763 -15.90622 -15.56775 -14.91952 -14.72787 -14.53750 -14.36600 -14.00168 -13.98877 -13.49186 -13.24847 -13.15681 -12.97487 -12.77768 -12.42924 -11.95078 -11.93684 -11.65326 -11.27348 -10.72175 -10.42850 -10.02945 -9.82585 -9.61137 -9.24555 -8.62727 -7.99202 -6.40956 0.38447 0.51608 0.87191 1.01365 1.06940 1.37740 1.48894 1.56607 1.87358 2.18609 2.83502 2.93871 3.75193 4.01409 4.10739 4.18852 4.29764 4.30807 4.33317 4.53325 4.64185 4.66978 4.85871 4.99948 5.05126 5.08140 5.22800 5.31589 5.42169 5.56934 5.59714 5.66655 5.81233 5.98527 6.18612 6.25644 6.58786 6.86544 6.90821 7.77895 8.28113 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.010342 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.497736 B = 2706.722637 C = 3636.506788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.128 6.128 3 C -0.085 4.085 4 C -0.146 4.146 5 C -0.113 4.113 6 C -0.126 4.126 7 C -0.118 4.118 8 C 0.003 3.997 9 C -0.240 4.240 10 C 0.119 3.881 11 N -0.595 5.595 12 C 0.073 3.927 13 C -0.232 4.232 14 C 0.129 3.871 15 C -0.423 4.423 16 H 0.067 0.933 17 C 0.053 3.947 18 N -0.797 5.797 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.261 1.261 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.137 0.863 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 6.780 0.163 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.117 5.883 3 C -0.198 4.198 4 C -0.170 4.170 5 C -0.133 4.133 6 C -0.146 4.146 7 C -0.138 4.138 8 C -0.003 4.003 9 C -0.246 4.246 10 C -0.038 4.038 11 N -0.310 5.310 12 C -0.075 4.075 13 C -0.254 4.254 14 C 0.121 3.879 15 C -0.454 4.454 16 H 0.086 0.914 17 C -0.166 4.166 18 N -0.421 5.421 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.185 1.185 23 H 0.104 0.896 24 H 0.130 0.870 25 H 0.110 0.890 26 H 0.155 0.845 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.518 5.307 0.833 9.240 hybrid contribution -1.302 0.673 -1.383 2.015 sum -8.820 5.980 -0.551 10.671 Atomic orbital electron populations 1.23777 0.95158 1.07381 1.05754 1.86798 1.05759 1.04379 1.91359 1.22139 0.96161 0.96468 1.05051 1.21338 0.98055 0.93593 1.04052 1.21330 0.97171 0.94967 0.99810 1.21320 0.92367 1.00094 1.00844 1.21398 1.00035 0.91478 1.00900 1.18370 0.90455 0.93010 0.98507 1.19663 1.01836 1.05692 0.97399 1.22368 0.90451 0.94980 0.96007 1.67330 1.23733 1.09896 1.30044 1.21976 0.98451 0.96612 0.90427 1.21951 0.98128 1.04923 1.00413 1.17928 0.90160 0.88854 0.90990 1.19362 1.21307 0.98037 1.06655 0.91444 1.26562 0.94122 0.93803 1.02089 1.69788 1.34937 1.00215 1.37182 0.85421 0.79123 0.79320 0.77455 1.18689 1.18893 1.18502 0.89562 0.86979 0.88963 0.84493 0.82832 0.83193 0.86098 0.84654 0.84649 0.86368 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.15 113.37 1.04 -3.15 16 2 S -0.13 -5.26 19.55 -56.49 -1.10 -6.37 16 3 C -0.08 -3.37 5.61 22.99 0.13 -3.24 16 4 C -0.15 -4.61 9.36 22.39 0.21 -4.40 16 5 C -0.11 -3.04 10.03 22.32 0.22 -2.81 16 6 C -0.13 -3.56 10.02 22.26 0.22 -3.34 16 7 C -0.12 -4.25 9.75 22.52 0.22 -4.03 16 8 C 0.00 0.13 4.50 -19.90 -0.09 0.04 16 9 C -0.24 -11.70 4.66 -19.49 -0.09 -11.79 16 10 C 0.12 5.73 10.93 85.03 0.93 6.66 16 11 N -0.59 -29.87 10.31 -196.12 -2.02 -31.89 16 12 C 0.07 3.64 11.08 84.20 0.93 4.57 16 13 C -0.23 -12.19 8.73 22.56 0.20 -11.99 16 14 C 0.13 6.76 5.05 -20.91 -0.11 6.65 16 15 C -0.42 -21.50 6.73 23.36 0.16 -21.34 16 16 H 0.07 3.50 7.17 -2.91 -0.02 3.48 16 17 C 0.05 2.53 5.25 85.32 0.45 2.98 16 18 N -0.80 -39.11 10.80 21.86 0.24 -38.87 16 19 Si 0.97 36.70 29.58 68.60 2.03 38.73 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 23 H 0.09 2.18 7.75 -2.39 -0.02 2.17 16 24 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.09 2.15 7.75 -2.39 -0.02 2.13 16 26 H 0.14 3.56 5.89 -2.91 -0.02 3.55 16 27 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.14 5.83 8.06 -2.91 -0.02 5.80 16 31 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 32 H 0.12 6.32 6.13 -2.91 -0.02 6.30 16 33 H 0.29 12.91 8.29 -92.71 -0.77 12.14 16 Total: -1.00 -60.97 293.83 4.68 -56.28 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 1.12 Total: 27.32 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 4.42 Total: -45.20 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -1.79 Total: -70.77 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -1.10 Total: -6.37 kcal Total: -60.97 4.68 -56.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242943350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.057 kcal (2) G-P(sol) polarization free energy of solvation -60.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds