Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76205 * 102.99771 * 2 1 4 4 C 1.38897 * 120.15164 * 0.30122 * 3 2 1 5 5 C 1.38055 * 120.03399 * 180.27506 * 4 3 2 6 6 C 1.38462 * 120.34888 * 359.72058 * 5 4 3 7 7 C 1.37982 * 120.30042 * 359.97438 * 6 5 4 8 8 C 1.39313 * 119.95691 * 0.02562 * 7 6 5 9 9 C 1.48228 * 120.17235 * 180.02562 * 8 7 6 10 10 C 1.40105 * 120.82785 * 129.99864 * 9 8 7 11 11 C 1.38458 * 119.41591 * 179.97438 * 10 9 8 12 12 N 1.31506 * 121.15321 * 359.97438 * 11 10 9 13 13 C 1.33663 * 121.81327 * 0.02562 * 12 11 10 14 14 C 1.41435 * 119.77819 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99586 * 188.93832 * 14 13 12 16 16 C 1.40029 * 119.99874 * 8.94262 * 14 13 12 17 17 N 1.30744 * 119.99679 * 195.79957 * 16 14 13 18 18 Si 1.86802 * 120.00036 * 15.79488 * 16 14 13 19 19 H 1.48495 * 109.47349 * 270.00093 * 18 16 14 20 20 H 1.48499 * 109.47015 * 30.00321 * 18 16 14 21 21 H 1.48504 * 109.46715 * 150.00081 * 18 16 14 22 22 C 1.39407 * 120.82568 * 310.25101 * 9 8 7 23 23 H 1.09004 * 109.47068 * 300.00148 * 1 2 3 24 24 H 1.08993 * 109.46957 * 60.00241 * 1 2 3 25 25 H 1.08998 * 109.46639 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.97923 * 359.97197 * 4 3 2 27 27 H 1.08003 * 119.82511 * 179.73864 * 5 4 3 28 28 H 1.08007 * 119.85477 * 180.02562 * 6 5 4 29 29 H 1.08009 * 120.02384 * 180.02562 * 7 6 5 30 30 H 1.07995 * 120.29711 * 359.97438 * 10 9 8 31 31 H 1.07994 * 119.42224 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99748 * 354.79941 * 17 16 14 33 33 H 1.07998 * 120.58822 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1970 2.6668 0.0063 5 6 1.5102 4.0114 0.0006 6 6 2.8327 4.4216 -0.0057 7 6 3.8506 3.4900 -0.0057 8 6 3.5488 2.1300 0.0001 9 6 4.6385 1.1251 0.0007 10 6 4.6447 0.0732 0.9261 11 6 5.6768 -0.8494 0.9001 12 7 6.6510 -0.7558 0.0217 13 6 6.6925 0.2278 -0.8823 14 6 7.7611 0.2874 -1.8070 15 1 7.8784 1.1535 -2.4415 16 6 8.6668 -0.7765 -1.8998 17 7 9.8110 -0.6095 -2.5098 18 14 8.2401 -2.4342 -1.1519 19 1 8.7139 -2.4794 0.2548 20 1 6.7682 -2.6281 -1.1849 21 1 8.8991 -3.5131 -1.9311 22 6 5.6855 1.2062 -0.9162 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 0.1636 2.3534 0.0108 27 1 0.7196 4.7471 0.0012 28 1 3.0686 5.4756 -0.0097 29 1 4.8806 3.8150 -0.0101 30 1 3.8515 -0.0172 1.6534 31 1 5.6819 -1.6600 1.6137 32 1 10.0014 0.2266 -2.9632 33 1 5.7192 2.0046 -1.6427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242944460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = 35.829217 kcal Electronic energy + Delta-G solvation = -17443.185563 eV Core-core repulsion = 14751.808199 eV Total energy + Delta-G solvation = -2691.377364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28934 -38.07563 -33.92128 -32.72493 -31.23058 -30.37518 -28.99609 -28.77743 -25.50888 -23.37186 -22.69398 -21.27980 -20.49099 -18.36245 -17.37337 -16.13094 -15.45553 -15.05936 -14.74580 -14.58613 -14.06976 -13.99936 -13.77877 -13.62260 -12.88936 -12.65380 -12.58053 -12.41328 -12.21688 -12.11523 -11.40059 -11.12599 -10.73004 -10.67212 -10.16582 -9.81409 -9.72215 -9.63186 -9.14606 -9.06652 -8.18595 -7.96411 -7.78868 -7.27064 -7.09077 -4.75256 1.24592 1.39459 1.68544 2.50343 2.61166 2.69998 3.57817 3.66153 3.85413 3.97860 4.41520 4.59379 4.91623 4.95056 5.02290 5.03416 5.13607 5.43555 5.49676 5.55117 5.63832 5.75480 5.83355 6.05938 6.28685 6.30282 6.41408 6.50387 6.55969 6.70102 6.94878 7.00524 7.26768 7.41566 7.47093 7.66792 8.08745 8.30234 8.64596 9.52237 9.99458 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.005748 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.515596 B = 4870.408980 C = 5630.442107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 S -0.070 6.070 3 C -0.081 4.081 4 C -0.137 4.137 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.092 4.092 8 C -0.006 4.006 9 C 0.007 3.993 10 C -0.288 4.288 11 C 0.149 3.851 12 N -0.568 5.568 13 C 0.251 3.749 14 C -0.479 4.479 15 H 0.081 0.919 16 C 0.050 3.950 17 N -0.803 5.803 18 Si 1.143 2.857 19 H -0.284 1.284 20 H -0.279 1.279 21 H -0.327 1.327 22 C -0.237 4.237 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.284 0.716 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 5.101 4.589 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.338 4.338 2 S 0.174 5.826 3 C -0.194 4.194 4 C -0.161 4.161 5 C -0.132 4.132 6 C -0.147 4.147 7 C -0.112 4.112 8 C -0.012 4.012 9 C 0.001 3.999 10 C -0.312 4.312 11 C -0.012 4.012 12 N -0.286 5.286 13 C 0.128 3.872 14 C -0.510 4.510 15 H 0.099 0.901 16 C -0.172 4.172 17 N -0.424 5.424 18 Si 0.975 3.025 19 H -0.211 1.211 20 H -0.206 1.206 21 H -0.260 1.260 22 C -0.259 4.259 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.129 0.871 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.810 2.032 4.754 14.746 hybrid contribution -2.152 3.682 -0.392 4.283 sum -15.961 5.714 4.363 17.506 Atomic orbital electron populations 1.23815 0.98579 1.06536 1.04889 1.86354 1.02265 1.02180 1.91803 1.21903 0.95667 0.97061 1.04741 1.21022 0.97762 0.93188 1.04139 1.20959 0.96494 0.95070 1.00661 1.21063 0.92675 0.99364 1.01598 1.21256 0.99718 0.91531 0.98674 1.18663 0.90723 0.93340 0.98432 1.18608 0.92422 0.93209 0.95656 1.21166 1.03553 1.00546 1.05976 1.22029 0.89355 0.95652 0.94214 1.66771 1.27290 1.25966 1.08590 1.18487 0.91159 0.87205 0.90332 1.20711 1.08394 1.04832 1.17087 0.90104 1.27710 0.90278 1.06145 0.93081 1.70627 1.19496 1.29485 1.22792 0.82136 0.75827 0.69728 0.74799 1.21129 1.20571 1.26008 1.21686 0.97053 1.03926 1.03235 0.90294 0.90388 0.87823 0.86148 0.86178 0.85979 0.85346 0.87071 0.85382 0.90522 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.15 101.05 0.92 -0.83 16 2 S -0.07 -1.09 19.43 -107.50 -2.09 -3.18 16 3 C -0.08 -1.32 6.11 -38.65 -0.24 -1.56 16 4 C -0.14 -1.84 9.36 -39.40 -0.37 -2.21 16 5 C -0.11 -1.38 10.03 -39.57 -0.40 -1.77 16 6 C -0.13 -1.66 10.03 -39.59 -0.40 -2.06 16 7 C -0.09 -1.48 9.54 -39.28 -0.37 -1.85 16 8 C -0.01 -0.11 5.53 -104.70 -0.58 -0.69 16 9 C 0.01 0.16 5.07 -104.66 -0.53 -0.37 16 10 C -0.29 -6.05 8.22 -38.80 -0.32 -6.37 16 11 C 0.15 3.32 11.17 -17.61 -0.20 3.12 16 12 N -0.57 -14.54 5.02 -11.22 -0.06 -14.59 16 13 C 0.25 6.61 6.27 -85.02 -0.53 6.07 16 14 C -0.48 -13.13 9.51 -37.69 -0.36 -13.48 16 15 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.05 1.36 5.51 -17.34 -0.10 1.27 16 17 N -0.80 -21.96 13.65 55.55 0.76 -21.20 16 18 Si 1.14 28.20 25.93 -169.99 -4.41 23.79 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.94 6.54 56.52 0.37 -6.57 16 21 H -0.33 -7.90 7.11 56.52 0.40 -7.50 16 22 C -0.24 -5.62 9.36 -38.32 -0.36 -5.98 16 23 H 0.08 0.72 7.74 -51.92 -0.40 0.32 16 24 H 0.08 0.74 7.76 -51.93 -0.40 0.34 16 25 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.12 1.32 5.89 -52.49 -0.31 1.01 16 27 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.13 2.01 8.05 -52.48 -0.42 1.58 16 30 H 0.11 2.12 7.14 -52.49 -0.37 1.75 16 31 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.28 7.42 8.73 -40.82 -0.36 7.06 16 33 H 0.10 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -29.45 293.38 -8.83 -38.28 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.63 Total: -0.79 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -3.82 Total: -26.71 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.70 Total: -35.80 kcal Atomic # 14 Polarization: 28.20 SS G_CDS: -4.41 Total: 23.79 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.09 Total: -3.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.45 -8.83 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242944460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.106 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds