Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76205 * 102.99771 * 2 1 4 4 C 1.38897 * 120.15164 * 0.30122 * 3 2 1 5 5 C 1.38055 * 120.03399 * 180.27506 * 4 3 2 6 6 C 1.38462 * 120.34888 * 359.72058 * 5 4 3 7 7 C 1.37982 * 120.30042 * 359.97438 * 6 5 4 8 8 C 1.39313 * 119.95691 * 0.02562 * 7 6 5 9 9 C 1.48228 * 120.17235 * 180.02562 * 8 7 6 10 10 C 1.40105 * 120.82785 * 129.99864 * 9 8 7 11 11 C 1.38458 * 119.41591 * 179.97438 * 10 9 8 12 12 N 1.31506 * 121.15321 * 359.97438 * 11 10 9 13 13 C 1.33663 * 121.81327 * 0.02562 * 12 11 10 14 14 C 1.41435 * 119.77819 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99586 * 188.93832 * 14 13 12 16 16 C 1.40029 * 119.99874 * 8.94262 * 14 13 12 17 17 N 1.30744 * 119.99679 * 195.79957 * 16 14 13 18 18 Si 1.86802 * 120.00036 * 15.79488 * 16 14 13 19 19 H 1.48495 * 109.47349 * 270.00093 * 18 16 14 20 20 H 1.48499 * 109.47015 * 30.00321 * 18 16 14 21 21 H 1.48504 * 109.46715 * 150.00081 * 18 16 14 22 22 C 1.39407 * 120.82568 * 310.25101 * 9 8 7 23 23 H 1.09004 * 109.47068 * 300.00148 * 1 2 3 24 24 H 1.08993 * 109.46957 * 60.00241 * 1 2 3 25 25 H 1.08998 * 109.46639 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.97923 * 359.97197 * 4 3 2 27 27 H 1.08003 * 119.82511 * 179.73864 * 5 4 3 28 28 H 1.08007 * 119.85477 * 180.02562 * 6 5 4 29 29 H 1.08009 * 120.02384 * 180.02562 * 7 6 5 30 30 H 1.07995 * 120.29711 * 359.97438 * 10 9 8 31 31 H 1.07994 * 119.42224 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99748 * 354.79941 * 17 16 14 33 33 H 1.07998 * 120.58822 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1970 2.6668 0.0063 5 6 1.5102 4.0114 0.0006 6 6 2.8327 4.4216 -0.0057 7 6 3.8506 3.4900 -0.0057 8 6 3.5488 2.1300 0.0001 9 6 4.6385 1.1251 0.0007 10 6 4.6447 0.0732 0.9261 11 6 5.6768 -0.8494 0.9001 12 7 6.6510 -0.7558 0.0217 13 6 6.6925 0.2278 -0.8823 14 6 7.7611 0.2874 -1.8070 15 1 7.8784 1.1535 -2.4415 16 6 8.6668 -0.7765 -1.8998 17 7 9.8110 -0.6095 -2.5098 18 14 8.2401 -2.4342 -1.1519 19 1 8.7139 -2.4794 0.2548 20 1 6.7682 -2.6281 -1.1849 21 1 8.8991 -3.5131 -1.9311 22 6 5.6855 1.2062 -0.9162 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 0.1636 2.3534 0.0108 27 1 0.7196 4.7471 0.0012 28 1 3.0686 5.4756 -0.0097 29 1 4.8806 3.8150 -0.0101 30 1 3.8515 -0.0172 1.6534 31 1 5.6819 -1.6600 1.6137 32 1 10.0014 0.2266 -2.9632 33 1 5.7192 2.0046 -1.6427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242944460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = 20.526437 kcal Electronic energy + Delta-G solvation = -17443.849141 eV Core-core repulsion = 14751.808199 eV Total energy + Delta-G solvation = -2692.040942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79499 -39.56850 -35.84612 -34.29772 -32.44118 -32.13767 -30.43582 -29.63852 -27.43240 -24.84908 -23.93717 -22.89098 -22.13781 -20.21410 -18.62674 -17.51099 -17.09824 -16.59291 -16.22861 -16.05155 -15.63165 -15.21162 -14.91822 -14.78485 -14.47488 -14.39902 -14.05958 -13.95246 -13.65887 -13.32451 -12.80259 -12.64926 -12.41057 -12.11950 -11.87797 -11.74428 -11.16418 -11.02750 -10.77114 -10.52264 -9.89888 -9.74602 -9.56824 -9.28216 -8.30442 -6.79573 -0.01804 0.27971 0.56318 0.74852 0.94803 1.57538 1.61304 1.70933 2.00817 2.44900 2.58987 2.74604 3.55946 3.66203 3.89771 3.97413 4.12378 4.29091 4.30373 4.40933 4.43497 4.54607 4.62539 4.71862 4.75081 4.85978 4.92843 5.12083 5.28254 5.36926 5.38190 5.42643 5.49853 5.66627 5.85601 5.95096 6.03394 6.36961 6.66355 7.60860 7.94478 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.025094 B = 0.005748 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.515596 B = 4870.408980 C = 5630.442107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.143 6.143 3 C -0.084 4.084 4 C -0.136 4.136 5 C -0.096 4.096 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.050 4.050 9 C 0.020 3.980 10 C -0.265 4.265 11 C 0.132 3.868 12 N -0.588 5.588 13 C 0.239 3.761 14 C -0.518 4.518 15 H 0.062 0.938 16 C 0.023 3.977 17 N -0.828 5.828 18 Si 1.176 2.824 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.320 1.320 22 C -0.258 4.258 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.280 0.720 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 6.061 6.219 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.101 5.899 3 C -0.197 4.197 4 C -0.159 4.159 5 C -0.116 4.116 6 C -0.143 4.143 7 C -0.125 4.125 8 C -0.056 4.056 9 C 0.014 3.986 10 C -0.288 4.288 11 C -0.028 4.028 12 N -0.306 5.306 13 C 0.114 3.886 14 C -0.550 4.550 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.451 5.451 18 Si 1.006 2.994 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.253 1.253 22 C -0.280 4.280 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.139 0.861 26 H 0.169 0.831 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.091 0.909 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.017 3.000 6.397 19.353 hybrid contribution -1.261 3.544 -0.744 3.835 sum -19.278 6.544 5.653 21.128 Atomic orbital electron populations 1.23851 0.93032 1.08211 1.06415 1.86439 1.08349 1.03115 1.92027 1.21964 0.95358 0.97525 1.04853 1.21446 0.98515 0.93201 1.02779 1.21497 0.97084 0.95497 0.97508 1.21428 0.92460 1.00334 1.00089 1.21341 1.00435 0.91423 0.99325 1.18611 0.90833 0.93440 1.02687 1.18945 0.92231 0.93619 0.93851 1.21543 1.02984 0.99200 1.05089 1.22680 0.88932 0.96990 0.94171 1.66733 1.28705 1.26036 1.09157 1.18605 0.91442 0.88178 0.90336 1.20659 1.10409 1.05037 1.18910 0.91982 1.28432 0.90103 1.07727 0.93112 1.70648 1.20053 1.29621 1.24790 0.81699 0.75150 0.67981 0.74541 1.20758 1.21240 1.25257 1.21724 0.97981 1.03850 1.04487 0.88407 0.89063 0.86133 0.83088 0.81940 0.82874 0.86299 0.84699 0.81923 0.90893 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.15 113.37 1.04 -1.36 16 2 S -0.14 -4.12 19.43 -56.49 -1.10 -5.22 16 3 C -0.08 -2.54 6.11 22.87 0.14 -2.40 16 4 C -0.14 -3.02 9.36 22.38 0.21 -2.82 16 5 C -0.10 -1.86 10.03 22.28 0.22 -1.64 16 6 C -0.12 -2.77 10.03 22.26 0.22 -2.55 16 7 C -0.11 -3.25 9.54 22.47 0.21 -3.04 16 8 C -0.05 -1.79 5.53 -19.92 -0.11 -1.90 16 9 C 0.02 0.87 5.07 -19.89 -0.10 0.77 16 10 C -0.27 -10.86 8.22 22.78 0.19 -10.67 16 11 C 0.13 5.76 11.17 84.79 0.95 6.71 16 12 N -0.59 -30.45 5.02 -189.40 -0.95 -31.40 16 13 C 0.24 13.05 6.27 40.19 0.25 13.31 16 14 C -0.52 -30.13 9.51 23.49 0.22 -29.91 16 15 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 16 C 0.02 1.33 5.51 85.29 0.47 1.80 16 17 N -0.83 -47.47 13.65 21.84 0.30 -47.17 16 18 Si 1.18 58.66 25.93 68.60 1.78 60.44 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 20 H -0.28 -14.29 6.54 99.48 0.65 -13.64 16 21 H -0.32 -15.35 7.11 99.48 0.71 -14.64 16 22 C -0.26 -12.74 9.36 23.09 0.22 -12.53 16 23 H 0.10 1.27 7.74 -2.39 -0.02 1.25 16 24 H 0.09 1.29 7.76 -2.39 -0.02 1.28 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.15 2.39 5.89 -2.91 -0.02 2.38 16 27 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.12 3.76 8.05 -2.91 -0.02 3.74 16 30 H 0.14 4.87 7.14 -2.91 -0.02 4.85 16 31 H 0.16 5.84 8.06 -2.91 -0.02 5.82 16 32 H 0.28 15.59 8.73 -92.71 -0.81 14.78 16 33 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -67.50 293.38 5.18 -62.32 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.02 Total: 7.25 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 4.13 Total: -46.22 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -0.65 Total: -78.57 kcal Atomic # 14 Polarization: 58.66 SS G_CDS: 1.78 Total: 60.44 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.10 Total: -5.22 kcal Total: -67.50 5.18 -62.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242944460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.844 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds