Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76209 * 102.99592 * 2 1 4 4 C 1.38920 * 120.18376 * 0.02562 * 3 2 1 5 5 C 1.38021 * 120.06515 * 179.97438 * 4 3 2 6 6 C 1.38656 * 120.43179 * 0.02562 * 5 4 3 7 7 C 1.37778 * 120.36761 * 359.71711 * 6 5 4 8 8 C 1.39742 * 119.92206 * 0.53884 * 7 6 5 9 9 C 1.47528 * 120.21160 * 179.74233 * 8 7 6 10 10 C 1.39850 * 120.66606 * 64.72415 * 9 8 7 11 11 C 1.38275 * 118.46826 * 180.02562 * 10 9 8 12 12 C 1.39115 * 119.75490 * 359.97438 * 11 10 9 13 13 N 1.31261 * 121.36971 * 0.02562 * 12 11 10 14 14 C 1.33732 * 121.64532 * 359.97438 * 13 12 11 15 15 C 1.40682 * 119.95719 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00269 * 180.02562 * 15 14 13 17 17 C 1.40107 * 119.99740 * 359.97438 * 15 14 13 18 18 N 1.30718 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46838 * 60.00060 * 19 17 15 21 21 H 1.48499 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47195 * 300.00170 * 19 17 15 23 23 H 1.08997 * 109.47447 * 299.99737 * 1 2 3 24 24 H 1.09003 * 109.47008 * 60.00228 * 1 2 3 25 25 H 1.09000 * 109.46519 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.96641 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.78410 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.81421 * 180.02562 * 6 5 4 29 29 H 1.07997 * 120.04550 * 180.28051 * 7 6 5 30 30 H 1.07995 * 120.76154 * 359.97438 * 10 9 8 31 31 H 1.07999 * 120.12720 * 179.97438 * 11 10 9 32 32 H 1.07996 * 119.30968 * 179.72060 * 12 11 10 33 33 H 0.97000 * 120.00534 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7170 0.0000 4 6 1.1973 2.6676 0.0005 5 6 1.5105 4.0118 0.0011 6 6 2.8342 4.4245 0.0005 7 6 3.8530 3.4970 0.0053 8 6 3.5531 2.1321 -0.0006 9 6 4.6390 1.1335 -0.0012 10 6 5.5086 1.0246 1.0886 11 6 6.5108 0.0732 1.0397 12 6 6.6312 -0.7459 -0.0783 13 7 5.8105 -0.6368 -1.0968 14 6 4.8220 0.2639 -1.1081 15 6 3.9625 0.3497 -2.2185 16 1 3.1642 1.0771 -2.2286 17 6 4.1426 -0.5079 -3.3117 18 7 5.1091 -1.3880 -3.2998 19 14 3.0017 -0.3935 -4.7865 20 1 3.0920 0.9656 -5.3779 21 1 3.4014 -1.4017 -5.8009 22 1 1.6052 -0.6530 -4.3533 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 0.1636 2.3544 0.0005 27 1 0.7193 4.7469 0.0011 28 1 3.0679 5.4789 0.0014 29 1 4.8822 3.8243 0.0095 30 1 5.4004 1.6694 1.9481 31 1 7.1975 -0.0337 1.8663 32 1 7.4194 -1.4835 -0.1108 33 1 5.2341 -1.9814 -4.0568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242944933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = 57.276711 kcal Electronic energy + Delta-G solvation = -18073.918669 eV Core-core repulsion = 15383.471338 eV Total energy + Delta-G solvation = -2690.447330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.82459 -37.49567 -33.65821 -32.15175 -30.76442 -30.24118 -28.42987 -28.29599 -25.66502 -22.77227 -22.17792 -21.22276 -20.14313 -17.47584 -16.99957 -15.77346 -15.51176 -14.65767 -14.42581 -14.22602 -14.02003 -13.61763 -13.36452 -13.29921 -12.62543 -12.22948 -12.08680 -11.97897 -11.90144 -11.35530 -11.17498 -11.05450 -10.84400 -10.59433 -10.37823 -9.95926 -9.46419 -9.34219 -9.01089 -8.46365 -8.05271 -7.55098 -7.51078 -6.55851 -6.38788 -4.47776 1.80176 1.89202 2.20598 2.75441 2.98858 3.07289 3.10745 3.18321 3.25865 3.94476 4.29519 4.76098 5.32934 5.37907 5.40707 5.42949 5.58247 5.85446 5.91132 5.96362 6.05473 6.11974 6.20606 6.40039 6.55595 6.60098 6.82656 6.87684 6.96051 7.10239 7.16454 7.33284 7.47768 7.61684 7.76590 8.05575 8.26519 8.63570 8.93998 10.09540 10.27724 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.010166 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.303731 B = 2753.511795 C = 3649.529848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 S -0.051 6.051 3 C -0.084 4.084 4 C -0.139 4.139 5 C -0.127 4.127 6 C -0.130 4.130 7 C -0.108 4.108 8 C 0.046 3.954 9 C -0.248 4.248 10 C -0.027 4.027 11 C -0.325 4.325 12 C 0.134 3.866 13 N -0.481 5.481 14 C 0.275 3.725 15 C -0.393 4.393 16 H 0.086 0.914 17 C 0.072 3.928 18 N -0.708 5.708 19 Si 0.899 3.101 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.261 1.261 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 4.820 3.448 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 S 0.195 5.805 3 C -0.197 4.197 4 C -0.164 4.164 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.128 4.128 8 C 0.040 3.960 9 C -0.253 4.253 10 C -0.051 4.051 11 C -0.348 4.348 12 C -0.035 4.035 13 N -0.192 5.192 14 C 0.152 3.848 15 C -0.423 4.423 16 H 0.104 0.896 17 C -0.155 4.155 18 N -0.328 5.328 19 Si 0.723 3.277 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.185 1.185 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.895 2.988 2.544 7.082 hybrid contribution -1.401 1.773 0.130 2.264 sum -7.297 4.761 2.674 9.114 Atomic orbital electron populations 1.23783 0.99912 1.06030 1.04429 1.86448 1.00407 1.02548 1.91129 1.22129 0.95941 0.96661 1.04979 1.20961 0.97542 0.93260 1.04618 1.20812 0.96195 0.94898 1.02801 1.20926 0.92837 0.98813 1.02542 1.21253 0.98880 0.92017 1.00646 1.18338 0.90425 0.92506 0.94765 1.19228 1.01606 1.05007 0.99482 1.20808 0.93115 0.95716 0.95458 1.21146 1.05420 1.06208 1.02075 1.22589 0.96079 0.95180 0.89695 1.68764 1.04927 1.21077 1.24452 1.18411 0.89729 0.86431 0.90271 1.19523 1.10405 1.14321 0.98098 0.89602 1.26075 0.95274 0.94399 0.99733 1.70114 1.23258 1.11266 1.28145 0.86497 0.81529 0.79165 0.80503 1.18870 1.20146 1.18519 0.90925 0.90511 0.88295 0.86809 0.86955 0.86840 0.86269 0.88818 0.88839 0.86521 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.15 101.05 0.92 -1.57 16 2 S -0.05 -1.03 19.41 -107.50 -2.09 -3.11 16 3 C -0.08 -1.70 5.08 -38.46 -0.20 -1.89 16 4 C -0.14 -2.39 9.36 -39.41 -0.37 -2.76 16 5 C -0.13 -1.99 10.03 -39.51 -0.40 -2.39 16 6 C -0.13 -2.10 10.02 -39.60 -0.40 -2.50 16 7 C -0.11 -2.04 9.75 -39.19 -0.38 -2.43 16 8 C 0.05 1.00 4.48 -104.68 -0.47 0.53 16 9 C -0.25 -5.98 4.66 -104.09 -0.49 -6.46 16 10 C -0.03 -0.60 9.88 -38.97 -0.39 -0.99 16 11 C -0.33 -7.32 10.10 -39.24 -0.40 -7.72 16 12 C 0.13 3.24 11.17 -17.47 -0.20 3.05 16 13 N -0.48 -13.12 7.85 -10.89 -0.09 -13.21 16 14 C 0.27 7.33 6.01 -84.70 -0.51 6.82 16 15 C -0.39 -10.29 7.19 -37.96 -0.27 -10.56 16 16 H 0.09 2.21 5.90 -52.49 -0.31 1.90 16 17 C 0.07 1.81 5.50 -17.32 -0.10 1.71 16 18 N -0.71 -18.55 11.46 55.56 0.64 -17.91 16 19 Si 0.90 18.74 29.56 -169.99 -5.03 13.72 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 H 0.07 0.93 7.75 -51.93 -0.40 0.52 16 24 H 0.08 1.06 7.75 -51.92 -0.40 0.65 16 25 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 26 H 0.11 1.68 5.89 -52.48 -0.31 1.37 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 294.04 15.07 4.43 4.43 Total: -1.00 -28.93 294.04 -9.27 -38.20 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.52 Total: 5.05 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.62 Total: -27.16 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.55 Total: -31.12 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.09 Total: -3.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.93 -9.27 -38.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242944933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.480 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds