Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76209 * 102.99592 * 2 1 4 4 C 1.38920 * 120.18376 * 0.02562 * 3 2 1 5 5 C 1.38021 * 120.06515 * 179.97438 * 4 3 2 6 6 C 1.38656 * 120.43179 * 0.02562 * 5 4 3 7 7 C 1.37778 * 120.36761 * 359.71711 * 6 5 4 8 8 C 1.39742 * 119.92206 * 0.53884 * 7 6 5 9 9 C 1.47528 * 120.21160 * 179.74233 * 8 7 6 10 10 C 1.39850 * 120.66606 * 64.72415 * 9 8 7 11 11 C 1.38275 * 118.46826 * 180.02562 * 10 9 8 12 12 C 1.39115 * 119.75490 * 359.97438 * 11 10 9 13 13 N 1.31261 * 121.36971 * 0.02562 * 12 11 10 14 14 C 1.33732 * 121.64532 * 359.97438 * 13 12 11 15 15 C 1.40682 * 119.95719 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00269 * 180.02562 * 15 14 13 17 17 C 1.40107 * 119.99740 * 359.97438 * 15 14 13 18 18 N 1.30718 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46838 * 60.00060 * 19 17 15 21 21 H 1.48499 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47195 * 300.00170 * 19 17 15 23 23 H 1.08997 * 109.47447 * 299.99737 * 1 2 3 24 24 H 1.09003 * 109.47008 * 60.00228 * 1 2 3 25 25 H 1.09000 * 109.46519 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.96641 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.78410 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.81421 * 180.02562 * 6 5 4 29 29 H 1.07997 * 120.04550 * 180.28051 * 7 6 5 30 30 H 1.07995 * 120.76154 * 359.97438 * 10 9 8 31 31 H 1.07999 * 120.12720 * 179.97438 * 11 10 9 32 32 H 1.07996 * 119.30968 * 179.72060 * 12 11 10 33 33 H 0.97000 * 120.00534 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7170 0.0000 4 6 1.1973 2.6676 0.0005 5 6 1.5105 4.0118 0.0011 6 6 2.8342 4.4245 0.0005 7 6 3.8530 3.4970 0.0053 8 6 3.5531 2.1321 -0.0006 9 6 4.6390 1.1335 -0.0012 10 6 5.5086 1.0246 1.0886 11 6 6.5108 0.0732 1.0397 12 6 6.6312 -0.7459 -0.0783 13 7 5.8105 -0.6368 -1.0968 14 6 4.8220 0.2639 -1.1081 15 6 3.9625 0.3497 -2.2185 16 1 3.1642 1.0771 -2.2286 17 6 4.1426 -0.5079 -3.3117 18 7 5.1091 -1.3880 -3.2998 19 14 3.0017 -0.3935 -4.7865 20 1 3.0920 0.9656 -5.3779 21 1 3.4014 -1.4017 -5.8009 22 1 1.6052 -0.6530 -4.3533 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 0.1636 2.3544 0.0005 27 1 0.7193 4.7469 0.0011 28 1 3.0679 5.4789 0.0014 29 1 4.8822 3.8243 0.0095 30 1 5.4004 1.6694 1.9481 31 1 7.1975 -0.0337 1.8663 32 1 7.4194 -1.4835 -0.1108 33 1 5.2341 -1.9814 -4.0568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242944933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = 42.697591 kcal Electronic energy + Delta-G solvation = -18074.550867 eV Core-core repulsion = 15383.471338 eV Total energy + Delta-G solvation = -2691.079529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43697 -39.09994 -35.50687 -33.76419 -32.21086 -31.97831 -29.99518 -29.54511 -27.50997 -24.38194 -23.64054 -22.96683 -21.74235 -19.33625 -18.42349 -17.48126 -17.04920 -16.21761 -16.09272 -15.88836 -15.54864 -14.93300 -14.73430 -14.55526 -14.30881 -13.92856 -13.63814 -13.48337 -13.24959 -12.96842 -12.85362 -12.74071 -12.48368 -12.06375 -11.95480 -11.66292 -11.21298 -10.79781 -10.42646 -10.13003 -9.76692 -9.41064 -9.23627 -8.28998 -8.01486 -6.37477 0.38326 0.50037 0.84170 0.97993 1.23206 1.37377 1.48223 1.55017 1.83834 2.22449 2.87849 2.93500 3.95623 4.09435 4.11192 4.27516 4.31301 4.32416 4.35537 4.47246 4.62534 4.64684 4.83420 4.86341 4.99794 5.03881 5.20095 5.24974 5.39937 5.58366 5.61916 5.72070 5.79372 5.94666 6.17046 6.23564 6.36668 6.77741 7.06021 8.23410 8.46261 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.010166 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.303731 B = 2753.511795 C = 3649.529848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.143 6.143 3 C -0.090 4.090 4 C -0.142 4.142 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.121 4.121 8 C 0.005 3.995 9 C -0.242 4.242 10 C -0.043 4.043 11 C -0.319 4.319 12 C 0.109 3.891 13 N -0.520 5.520 14 C 0.249 3.751 15 C -0.413 4.413 16 H 0.081 0.919 17 C 0.030 3.970 18 N -0.749 5.749 19 Si 0.965 3.035 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.255 1.255 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 6.993 3.785 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.102 5.898 3 C -0.203 4.203 4 C -0.166 4.166 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.001 4.001 9 C -0.247 4.247 10 C -0.068 4.068 11 C -0.342 4.342 12 C -0.058 4.058 13 N -0.232 5.232 14 C 0.126 3.874 15 C -0.444 4.444 16 H 0.099 0.901 17 C -0.193 4.193 18 N -0.371 5.371 19 Si 0.786 3.214 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.179 1.179 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.133 0.867 26 H 0.158 0.842 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.229 5.168 2.907 10.143 hybrid contribution -0.722 1.217 0.191 1.428 sum -8.951 6.386 3.098 11.424 Atomic orbital electron populations 1.23774 0.94367 1.07609 1.05906 1.86652 1.06643 1.04815 1.91673 1.22120 0.96120 0.96294 1.05758 1.21354 0.98108 0.93517 1.03651 1.21338 0.97106 0.95026 0.99951 1.21331 0.92419 1.00075 1.00568 1.21383 0.99978 0.91544 1.01177 1.18434 0.90569 0.93104 0.97988 1.19542 1.01972 1.04528 0.98678 1.21167 0.93228 0.96318 0.96052 1.21460 1.05472 1.05077 1.02143 1.22985 0.96485 0.96300 0.90039 1.68686 1.06110 1.22318 1.26116 1.18777 0.90016 0.87132 0.91515 1.19576 1.10781 1.15108 0.98915 0.90071 1.26876 0.96532 0.93702 1.02156 1.70212 1.25149 1.12443 1.29261 0.85511 0.79549 0.79295 0.77088 1.18549 1.19109 1.17903 0.88776 0.89465 0.86724 0.84214 0.82668 0.83189 0.86339 0.86571 0.85886 0.84782 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.15 113.37 1.04 -2.90 16 2 S -0.14 -5.78 19.41 -56.49 -1.10 -6.88 16 3 C -0.09 -3.56 5.08 23.00 0.12 -3.45 16 4 C -0.14 -4.43 9.36 22.38 0.21 -4.23 16 5 C -0.11 -3.06 10.03 22.32 0.22 -2.84 16 6 C -0.12 -3.54 10.02 22.26 0.22 -3.31 16 7 C -0.12 -4.44 9.75 22.52 0.22 -4.22 16 8 C 0.01 0.24 4.48 -19.90 -0.09 0.15 16 9 C -0.24 -11.98 4.66 -19.52 -0.09 -12.07 16 10 C -0.04 -2.00 9.88 22.67 0.22 -1.77 16 11 C -0.32 -14.44 10.10 22.49 0.23 -14.21 16 12 C 0.11 5.44 11.17 84.99 0.95 6.39 16 13 N -0.52 -29.67 7.85 -188.37 -1.48 -31.14 16 14 C 0.25 13.84 6.01 40.37 0.24 14.08 16 15 C -0.41 -22.41 7.19 23.32 0.17 -22.24 16 16 H 0.08 4.32 5.90 -2.91 -0.02 4.30 16 17 C 0.03 1.55 5.50 85.31 0.47 2.01 16 18 N -0.75 -40.94 11.46 21.85 0.25 -40.69 16 19 Si 0.97 39.09 29.56 68.60 2.03 41.11 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 23 H 0.09 2.09 7.75 -2.39 -0.02 2.07 16 24 H 0.09 2.14 7.75 -2.39 -0.02 2.12 16 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.14 3.53 5.89 -2.91 -0.02 3.52 16 27 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 32 H 0.13 5.95 8.06 -2.91 -0.02 5.93 16 33 H 0.28 13.82 8.29 -92.71 -0.77 13.05 16 Total: -1.00 -66.35 294.04 4.95 -61.40 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.12 Total: 24.80 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 4.13 Total: -48.59 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.23 Total: -71.84 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.11 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.10 Total: -6.88 kcal Total: -66.35 4.95 -61.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242944933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.093 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds