Wall clock time and date at job start Mon Mar 30 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76193 * 103.00269 * 2 1 4 4 C 1.38896 * 120.14933 * 359.97135 * 3 2 1 5 5 C 1.38063 * 120.03834 * 180.02562 * 4 3 2 6 6 C 1.38476 * 120.34264 * 0.02562 * 5 4 3 7 7 C 1.37967 * 120.30813 * 359.97438 * 6 5 4 8 8 C 1.39334 * 119.95537 * 0.02562 * 7 6 5 9 9 C 1.48198 * 120.17368 * 179.97438 * 8 7 6 10 10 C 1.39002 * 119.61967 * 359.97438 * 9 8 7 11 11 C 1.40809 * 118.75267 * 180.02562 * 10 9 8 12 12 C 1.41530 * 120.98287 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00204 * 23.18420 * 12 11 10 14 14 C 1.40047 * 120.00019 * 203.18379 * 12 11 10 15 15 N 1.30735 * 120.00044 * 17.30439 * 14 12 11 16 16 Si 1.86794 * 119.99924 * 197.30653 * 14 12 11 17 17 H 1.48499 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47041 * 119.99898 * 16 14 12 19 19 H 1.48496 * 109.47314 * 239.99643 * 16 14 12 20 20 C 1.41171 * 118.03467 * 359.97438 * 11 10 9 21 21 C 1.37703 * 119.09390 * 0.02562 * 20 11 10 22 22 N 1.31945 * 121.16357 * 359.72053 * 21 20 11 23 23 H 1.08998 * 109.47219 * 60.00130 * 1 2 3 24 24 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47081 * 300.00283 * 1 2 3 26 26 H 1.07998 * 119.98310 * 0.02996 * 4 3 2 27 27 H 1.07997 * 119.83098 * 180.28093 * 5 4 3 28 28 H 1.08004 * 119.84317 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.02903 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.62632 * 0.02562 * 10 9 8 31 31 H 0.96996 * 120.00059 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.44947 * 179.97438 * 20 11 10 33 33 H 1.08002 * 119.41739 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1971 2.6667 -0.0006 5 6 1.5103 4.0113 -0.0011 6 6 2.8330 4.4215 -0.0016 7 6 3.8508 3.4901 -0.0010 8 6 3.5490 2.1298 -0.0005 9 6 4.6385 1.1251 -0.0004 10 6 5.9627 1.5477 -0.0014 11 6 6.9833 0.5776 -0.0019 12 6 8.3473 0.9551 -0.0035 13 1 8.6388 1.9279 0.3639 14 6 9.3191 0.0671 -0.4815 15 7 8.9671 -0.9485 -1.2257 16 14 11.1182 0.3336 -0.0554 17 1 11.2517 1.5443 0.7940 18 1 11.6322 -0.8478 0.6831 19 1 11.9009 0.5157 -1.3042 20 6 6.6057 -0.7827 -0.0008 21 6 5.2672 -1.1060 0.0002 22 7 4.3384 -0.1689 0.0056 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1636 2.3534 -0.0006 27 1 0.7198 4.7471 0.0030 28 1 3.0688 5.4755 -0.0016 29 1 4.8808 3.8150 -0.0010 30 1 6.2043 2.6003 -0.0019 31 1 9.6401 -1.5633 -1.5571 32 1 7.3564 -1.5591 -0.0015 33 1 4.9724 -2.1450 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242945717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:28 Heat of formation + Delta-G solvation = 46.509930 kcal Electronic energy + Delta-G solvation = -17364.065662 eV Core-core repulsion = 14673.151449 eV Total energy + Delta-G solvation = -2690.914213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.10093 -37.76086 -34.26518 -31.87583 -31.11435 -30.63000 -28.33953 -28.16091 -26.03811 -23.05515 -22.70045 -20.91641 -20.49903 -17.86053 -16.84804 -15.75245 -15.43678 -15.07750 -14.51547 -14.30960 -13.84122 -13.56361 -13.54724 -13.39636 -12.87807 -12.81771 -12.53112 -12.08020 -11.99461 -11.52474 -11.34244 -11.18659 -10.92165 -10.70977 -10.32429 -10.05089 -9.53164 -9.48775 -9.29917 -8.89669 -8.13998 -7.76254 -7.42376 -6.93267 -6.61043 -4.66777 1.38315 1.64841 2.21486 2.67736 2.86864 2.98979 3.04130 3.15375 3.18648 3.80110 4.12480 4.62219 5.07671 5.17857 5.25492 5.42003 5.43265 5.60436 5.67418 5.74665 5.93799 6.01575 6.15699 6.28545 6.52355 6.58174 6.70605 6.80547 6.82253 7.03384 7.06844 7.20010 7.32346 7.38887 7.77580 8.02325 8.37128 8.64999 8.66588 9.44902 9.99060 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.005095 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.428114 B = 5494.594677 C = 6411.606304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 S 0.034 5.966 3 C -0.078 4.078 4 C -0.145 4.145 5 C -0.111 4.111 6 C -0.136 4.136 7 C -0.091 4.091 8 C -0.007 4.007 9 C 0.148 3.852 10 C -0.248 4.248 11 C 0.126 3.874 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.783 5.783 16 Si 0.912 3.088 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.273 1.273 20 C -0.206 4.206 21 C 0.093 3.907 22 N -0.544 5.544 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.284 0.716 32 H 0.129 0.871 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 4.145 1.587 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.396 4.396 2 S 0.279 5.721 3 C -0.193 4.193 4 C -0.169 4.169 5 C -0.131 4.131 6 C -0.157 4.157 7 C -0.111 4.111 8 C -0.014 4.014 9 C 0.015 3.985 10 C -0.271 4.271 11 C 0.118 3.882 12 C -0.484 4.484 13 H 0.101 0.899 14 C -0.142 4.142 15 N -0.408 5.408 16 Si 0.736 3.264 17 H -0.182 1.182 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.229 4.229 21 C -0.058 4.058 22 N -0.258 5.258 23 H 0.086 0.914 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.751 2.526 1.457 9.224 hybrid contribution 0.855 1.476 0.025 1.706 sum -7.896 4.002 1.482 8.976 Atomic orbital electron populations 1.24314 1.06207 1.05371 1.03716 1.87608 0.95144 0.99606 1.89743 1.22185 0.95513 0.98577 1.03000 1.21018 0.97807 0.93151 1.04962 1.20941 0.96385 0.95097 1.00674 1.20961 0.92652 0.99110 1.02976 1.21232 0.99762 0.91558 0.98573 1.18486 0.90294 0.92623 0.99994 1.19102 0.90464 0.89865 0.99095 1.21809 0.92112 0.98889 1.14317 1.17768 0.92956 0.91166 0.86289 1.19642 0.90602 1.01713 1.36489 0.89911 1.25983 1.02143 0.93853 0.92234 1.69767 1.36867 1.11830 1.22343 0.86194 0.81036 0.79812 0.79378 1.18208 1.19495 1.19785 1.22273 0.95605 0.97669 1.07313 1.21897 0.89643 0.96518 0.97753 1.66161 1.36541 1.00086 1.23019 0.91377 0.88822 0.91391 0.86337 0.86520 0.86224 0.85146 0.87658 0.90505 0.85378 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.02 9.15 101.05 0.92 -2.09 16 2 S 0.03 0.63 19.08 -107.50 -2.05 -1.43 16 3 C -0.08 -1.47 6.14 -38.64 -0.24 -1.71 16 4 C -0.14 -2.26 9.36 -39.40 -0.37 -2.63 16 5 C -0.11 -1.56 10.03 -39.56 -0.40 -1.96 16 6 C -0.14 -1.99 10.03 -39.59 -0.40 -2.38 16 7 C -0.09 -1.59 9.41 -39.27 -0.37 -1.96 16 8 C -0.01 -0.14 5.89 -104.70 -0.62 -0.76 16 9 C 0.15 3.47 6.71 -83.06 -0.56 2.91 16 10 C -0.25 -5.98 9.25 -38.33 -0.35 -6.34 16 11 C 0.13 3.26 5.61 -106.56 -0.60 2.67 16 12 C -0.45 -11.50 9.12 -37.65 -0.34 -11.84 16 13 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 14 C 0.08 1.86 5.19 -17.34 -0.09 1.77 16 15 N -0.78 -19.28 10.90 55.55 0.61 -18.68 16 16 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 C -0.21 -5.20 8.80 -38.66 -0.34 -5.54 16 21 C 0.09 2.19 11.15 -17.70 -0.20 2.00 16 22 N -0.54 -12.84 6.58 -9.96 -0.07 -12.91 16 23 H 0.07 0.85 7.75 -51.92 -0.40 0.44 16 24 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 25 H 0.07 0.84 7.75 -51.92 -0.40 0.44 16 26 H 0.12 1.59 5.89 -52.49 -0.31 1.28 16 27 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.13 2.17 6.18 -52.49 -0.32 1.84 16 30 H 0.11 2.33 6.19 -52.49 -0.32 2.00 16 31 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 32 H 0.13 3.27 6.16 -52.49 -0.32 2.94 16 33 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -27.40 291.74 -9.41 -36.82 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.33 Total: 6.97 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -3.94 Total: -27.86 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.54 Total: -31.59 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.05 Total: -1.43 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.40 -9.41 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.327 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds