Wall clock time and date at job start Mon Mar 30 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76193 * 103.00269 * 2 1 4 4 C 1.38896 * 120.14933 * 359.97135 * 3 2 1 5 5 C 1.38063 * 120.03834 * 180.02562 * 4 3 2 6 6 C 1.38476 * 120.34264 * 0.02562 * 5 4 3 7 7 C 1.37967 * 120.30813 * 359.97438 * 6 5 4 8 8 C 1.39334 * 119.95537 * 0.02562 * 7 6 5 9 9 C 1.48198 * 120.17368 * 179.97438 * 8 7 6 10 10 C 1.39002 * 119.61967 * 359.97438 * 9 8 7 11 11 C 1.40809 * 118.75267 * 180.02562 * 10 9 8 12 12 C 1.41530 * 120.98287 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00204 * 23.18420 * 12 11 10 14 14 C 1.40047 * 120.00019 * 203.18379 * 12 11 10 15 15 N 1.30735 * 120.00044 * 17.30439 * 14 12 11 16 16 Si 1.86794 * 119.99924 * 197.30653 * 14 12 11 17 17 H 1.48499 * 109.47468 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47041 * 119.99898 * 16 14 12 19 19 H 1.48496 * 109.47314 * 239.99643 * 16 14 12 20 20 C 1.41171 * 118.03467 * 359.97438 * 11 10 9 21 21 C 1.37703 * 119.09390 * 0.02562 * 20 11 10 22 22 N 1.31945 * 121.16357 * 359.72053 * 21 20 11 23 23 H 1.08998 * 109.47219 * 60.00130 * 1 2 3 24 24 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47081 * 300.00283 * 1 2 3 26 26 H 1.07998 * 119.98310 * 0.02996 * 4 3 2 27 27 H 1.07997 * 119.83098 * 180.28093 * 5 4 3 28 28 H 1.08004 * 119.84317 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.02903 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.62632 * 0.02562 * 10 9 8 31 31 H 0.96996 * 120.00059 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.44947 * 179.97438 * 20 11 10 33 33 H 1.08002 * 119.41739 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1971 2.6667 -0.0006 5 6 1.5103 4.0113 -0.0011 6 6 2.8330 4.4215 -0.0016 7 6 3.8508 3.4901 -0.0010 8 6 3.5490 2.1298 -0.0005 9 6 4.6385 1.1251 -0.0004 10 6 5.9627 1.5477 -0.0014 11 6 6.9833 0.5776 -0.0019 12 6 8.3473 0.9551 -0.0035 13 1 8.6388 1.9279 0.3639 14 6 9.3191 0.0671 -0.4815 15 7 8.9671 -0.9485 -1.2257 16 14 11.1182 0.3336 -0.0554 17 1 11.2517 1.5443 0.7940 18 1 11.6322 -0.8478 0.6831 19 1 11.9009 0.5157 -1.3042 20 6 6.6057 -0.7827 -0.0008 21 6 5.2672 -1.1060 0.0002 22 7 4.3384 -0.1689 0.0056 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1636 2.3534 -0.0006 27 1 0.7198 4.7471 0.0030 28 1 3.0688 5.4755 -0.0016 29 1 4.8808 3.8150 -0.0010 30 1 6.2043 2.6003 -0.0019 31 1 9.6401 -1.5633 -1.5571 32 1 7.3564 -1.5591 -0.0015 33 1 4.9724 -2.1450 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242945717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:28 Heat of formation + Delta-G solvation = 33.808188 kcal Electronic energy + Delta-G solvation = -17364.616451 eV Core-core repulsion = 14673.151449 eV Total energy + Delta-G solvation = -2691.465002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65839 -39.28715 -36.07814 -33.38385 -32.79396 -32.05135 -29.76265 -29.46298 -27.88253 -24.59571 -24.16550 -22.53542 -22.09674 -19.52261 -18.30349 -17.36704 -16.94845 -16.69266 -16.14494 -15.82252 -15.32392 -14.91935 -14.89963 -14.76874 -14.39758 -14.21100 -14.12810 -13.51473 -13.24920 -13.13507 -12.96485 -12.79535 -12.34508 -12.00694 -11.92568 -11.84241 -11.28505 -10.93948 -10.61844 -10.34974 -10.01677 -9.44061 -9.05530 -8.72236 -8.03906 -6.58662 -0.05985 0.39181 0.89916 0.91867 1.21212 1.38305 1.53424 1.56720 1.92225 2.16973 2.65074 2.93811 3.58435 3.74491 3.92822 4.13192 4.34223 4.41354 4.41581 4.46014 4.54338 4.74834 4.85204 4.93948 4.97246 4.99422 5.04253 5.19849 5.28980 5.45520 5.49028 5.58933 5.64039 5.88348 6.02575 6.18951 6.48652 6.76797 6.77782 7.62840 8.21950 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.005095 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.428114 B = 5494.594677 C = 6411.606304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 S -0.040 6.040 3 C -0.087 4.087 4 C -0.147 4.147 5 C -0.094 4.094 6 C -0.129 4.129 7 C -0.100 4.100 8 C -0.052 4.052 9 C 0.145 3.855 10 C -0.271 4.271 11 C 0.099 3.901 12 C -0.486 4.486 13 H 0.083 0.917 14 C 0.039 3.961 15 N -0.813 5.813 16 Si 0.989 3.011 17 H -0.256 1.256 18 H -0.262 1.262 19 H -0.264 1.264 20 C -0.231 4.231 21 C 0.088 3.912 22 N -0.545 5.545 23 H 0.081 0.919 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.293 0.707 32 H 0.117 0.883 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 6.018 1.748 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.371 4.371 2 S 0.205 5.795 3 C -0.201 4.201 4 C -0.171 4.171 5 C -0.114 4.114 6 C -0.150 4.150 7 C -0.121 4.121 8 C -0.059 4.059 9 C 0.011 3.989 10 C -0.294 4.294 11 C 0.091 3.909 12 C -0.516 4.516 13 H 0.101 0.899 14 C -0.179 4.179 15 N -0.439 5.439 16 Si 0.808 3.192 17 H -0.180 1.180 18 H -0.187 1.187 19 H -0.188 1.188 20 C -0.254 4.254 21 C -0.063 4.063 22 N -0.259 5.259 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.101 0.899 26 H 0.163 0.837 27 H 0.180 0.820 28 H 0.174 0.826 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.563 4.405 1.615 11.558 hybrid contribution 1.145 0.987 -0.045 1.512 sum -9.418 5.392 1.569 10.965 Atomic orbital electron populations 1.24202 1.00898 1.06944 1.05047 1.87603 1.00565 1.01213 1.90110 1.22279 0.95584 0.98767 1.03511 1.21406 0.98268 0.93408 1.04001 1.21495 0.97246 0.95264 0.97349 1.21388 0.92248 1.00310 1.01048 1.21392 1.00822 0.91107 0.98737 1.18554 0.90401 0.93063 1.03917 1.19683 0.91381 0.90623 0.97165 1.21986 0.92548 0.99188 1.15699 1.18157 0.93955 0.91933 0.86812 1.19911 0.91224 1.02556 1.37933 0.89864 1.26871 1.06501 0.93119 0.91361 1.69813 1.38778 1.12554 1.22716 0.85061 0.74974 0.79831 0.79299 1.17953 1.18679 1.18815 1.22243 0.96154 0.97376 1.09583 1.22286 0.89305 0.97870 0.96879 1.66618 1.36233 1.00256 1.22780 0.90011 0.87202 0.89920 0.83735 0.82025 0.82551 0.85414 0.86742 0.89572 0.86470 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.78 9.15 113.37 1.04 -3.75 16 2 S -0.04 -1.43 19.08 -56.49 -1.08 -2.51 16 3 C -0.09 -3.19 6.14 22.88 0.14 -3.04 16 4 C -0.15 -4.08 9.36 22.39 0.21 -3.87 16 5 C -0.09 -2.19 10.03 22.28 0.22 -1.97 16 6 C -0.13 -3.33 10.03 22.26 0.22 -3.10 16 7 C -0.10 -3.45 9.41 22.47 0.21 -3.23 16 8 C -0.05 -2.16 5.89 -19.92 -0.12 -2.28 16 9 C 0.15 7.09 6.71 41.82 0.28 7.37 16 10 C -0.27 -13.83 9.25 23.08 0.21 -13.62 16 11 C 0.10 5.43 5.61 -21.12 -0.12 5.31 16 12 C -0.49 -25.76 9.12 23.52 0.21 -25.55 16 13 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 14 C 0.04 1.90 5.19 85.30 0.44 2.34 16 15 N -0.81 -41.41 10.90 21.84 0.24 -41.17 16 16 Si 0.99 36.74 29.59 68.60 2.03 38.77 16 17 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 C -0.23 -12.35 8.80 22.86 0.20 -12.15 16 21 C 0.09 4.36 11.15 84.55 0.94 5.30 16 22 N -0.54 -26.81 6.58 -185.43 -1.22 -28.03 16 23 H 0.08 1.74 7.75 -2.39 -0.02 1.72 16 24 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.08 1.74 7.75 -2.39 -0.02 1.72 16 26 H 0.15 3.20 5.89 -2.91 -0.02 3.19 16 27 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.13 4.31 6.18 -2.91 -0.02 4.29 16 30 H 0.11 5.37 6.19 -2.91 -0.02 5.35 16 31 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 32 H 0.12 6.37 6.16 -2.91 -0.02 6.35 16 33 H 0.15 6.29 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -63.19 291.74 5.21 -57.98 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.13 Total: 27.19 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 4.11 Total: -52.23 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.98 Total: -69.21 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.08 Total: -2.51 kcal Total: -63.19 5.21 -57.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.790 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds