Wall clock time and date at job start Mon Mar 30 2020 00:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99838 * 2 1 4 4 C 1.38857 * 120.14664 * 0.02562 * 3 2 1 5 5 C 1.38095 * 120.03956 * 180.02562 * 4 3 2 6 6 C 1.38443 * 120.32748 * 359.95108 * 5 4 3 7 7 C 1.38018 * 120.29479 * 0.02562 * 6 5 4 8 8 C 1.39257 * 119.95686 * 0.02562 * 7 6 5 9 9 C 1.48306 * 120.16265 * 179.72443 * 8 7 6 10 10 C 1.39766 * 120.41465 * 130.00500 * 9 8 7 11 11 N 1.31904 * 121.14461 * 180.02562 * 10 9 8 12 12 C 1.31523 * 122.12177 * 359.97438 * 11 10 9 13 13 C 1.40784 * 120.67811 * 0.02562 * 12 11 10 14 14 C 1.41444 * 120.60108 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99552 * 335.75282 * 14 13 12 16 16 C 1.39928 * 119.99996 * 155.75492 * 14 13 12 17 17 N 1.30828 * 120.00261 * 343.19129 * 16 14 13 18 18 Si 1.86801 * 119.99898 * 163.19126 * 16 14 13 19 19 H 1.48501 * 109.47188 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47034 * 119.99945 * 18 16 14 21 21 H 1.48501 * 109.47133 * 239.99802 * 18 16 14 22 22 C 1.39179 * 120.41726 * 309.72570 * 9 8 7 23 23 H 1.09001 * 109.46969 * 299.99889 * 1 2 3 24 24 H 1.08990 * 109.47319 * 60.00533 * 1 2 3 25 25 H 1.09002 * 109.46477 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.98165 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.83651 * 179.97438 * 5 4 3 28 28 H 1.08004 * 119.84820 * 180.02562 * 6 5 4 29 29 H 1.08001 * 120.02037 * 179.97438 * 7 6 5 30 30 H 1.08003 * 119.43205 * 359.97438 * 10 9 8 31 31 H 1.08001 * 119.66391 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00627 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.95691 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1972 2.6664 0.0005 5 6 1.5103 4.0114 0.0000 6 6 2.8327 4.4213 -0.0001 7 6 3.8505 3.4891 -0.0001 8 6 3.5485 2.1297 -0.0006 9 6 4.6386 1.1242 -0.0069 10 6 4.6374 0.0736 0.9150 11 7 5.5999 -0.8283 0.9226 12 6 6.6021 -0.7888 0.0719 13 6 6.6859 0.2336 -0.8924 14 6 7.7648 0.2748 -1.8061 15 1 8.7029 -0.1982 -1.5557 16 6 7.6167 0.9285 -3.0344 17 7 6.4215 1.2110 -3.4853 18 14 9.1257 1.3979 -4.0305 19 1 10.3496 0.9696 -3.3066 20 1 9.0736 0.7266 -5.3541 21 1 9.1535 2.8701 -4.2230 22 6 5.6725 1.2115 -0.9344 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.1637 2.3529 0.0014 27 1 0.7197 4.7472 0.0000 28 1 3.0687 5.4752 -0.0001 29 1 4.8805 3.8138 -0.0006 30 1 3.8350 -0.0006 1.6340 31 1 7.3688 -1.5483 0.1135 32 1 6.3188 1.6638 -4.3369 33 1 5.6995 2.0085 -1.6628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242945850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:46 Heat of formation + Delta-G solvation = 41.989427 kcal Electronic energy + Delta-G solvation = -17556.178854 eV Core-core repulsion = 14865.068617 eV Total energy + Delta-G solvation = -2691.110237 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.06261 -37.78351 -34.09517 -32.42085 -31.00823 -30.33829 -28.62381 -28.31620 -25.61765 -22.93576 -22.61240 -21.35041 -20.30797 -17.65974 -16.94492 -15.89904 -15.43704 -15.16529 -14.95996 -14.31487 -14.23923 -13.83165 -13.59175 -13.41263 -12.77439 -12.54864 -12.30935 -12.14109 -11.75170 -11.55190 -11.29227 -11.25228 -11.13593 -10.83953 -10.56930 -9.99993 -9.65278 -9.42239 -9.39955 -8.83901 -8.16747 -7.91176 -7.56942 -6.85692 -6.85471 -4.49899 1.48402 1.61222 1.88226 2.62663 2.77562 2.92281 3.02037 3.07273 3.20690 3.84501 4.06263 4.57371 5.10519 5.17551 5.18165 5.18742 5.33759 5.61081 5.68044 5.70124 5.81803 6.02179 6.10893 6.28294 6.51425 6.58078 6.66807 6.73200 6.79309 7.02008 7.08719 7.16723 7.26196 7.67144 7.84003 7.90361 8.39791 8.66068 8.68866 9.62590 10.05435 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.006146 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.175982 B = 4554.578715 C = 5203.862284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 S -0.073 6.073 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.096 4.096 8 C 0.012 3.988 9 C -0.100 4.100 10 C -0.009 4.009 11 N -0.468 5.468 12 C -0.015 4.015 13 C 0.060 3.940 14 C -0.450 4.450 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.789 5.789 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.109 4.109 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.283 0.717 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 4.934 2.487 10.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 S 0.172 5.828 3 C -0.198 4.198 4 C -0.160 4.160 5 C -0.138 4.138 6 C -0.146 4.146 7 C -0.115 4.115 8 C 0.006 3.994 9 C -0.103 4.103 10 C -0.168 4.168 11 N -0.174 5.174 12 C -0.176 4.176 13 C 0.056 3.944 14 C -0.480 4.480 15 H 0.102 0.898 16 C -0.145 4.145 17 N -0.413 5.413 18 Si 0.735 3.265 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.196 1.196 22 C -0.135 4.135 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.094 0.906 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.212 3.265 2.885 9.297 hybrid contribution -0.307 2.129 -1.356 2.543 sum -8.519 5.395 1.530 10.199 Atomic orbital electron populations 1.23792 0.98773 1.06370 1.04790 1.86375 1.02039 1.02482 1.91947 1.21873 0.95800 0.96832 1.05262 1.20985 0.97635 0.93199 1.04196 1.20899 0.96396 0.94992 1.01485 1.21031 0.92725 0.99195 1.01657 1.21230 0.99533 0.91673 0.99105 1.18599 0.90667 0.93258 0.96923 1.19421 0.95262 0.96371 0.99232 1.21761 0.98987 0.94403 1.01659 1.66967 1.01904 1.25219 1.23358 1.22564 0.97992 0.99162 0.97857 1.18462 0.92954 0.90454 0.92529 1.19570 0.99067 1.30096 0.99257 0.89807 1.25964 0.97127 0.93384 0.97989 1.69801 1.23332 1.29611 1.18596 0.86215 0.81931 0.79031 0.79359 1.18212 1.19860 1.19635 1.21755 0.94085 0.99644 0.97972 0.90384 0.90446 0.87975 0.86364 0.86423 0.86237 0.85557 0.85621 0.85600 0.90623 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.15 101.05 0.92 -1.10 16 2 S -0.07 -1.28 19.36 -107.50 -2.08 -3.36 16 3 C -0.08 -1.56 6.10 -38.68 -0.24 -1.79 16 4 C -0.14 -2.07 9.36 -39.40 -0.37 -2.44 16 5 C -0.12 -1.65 10.03 -39.56 -0.40 -2.05 16 6 C -0.13 -1.87 10.03 -39.59 -0.40 -2.26 16 7 C -0.10 -1.72 9.53 -39.28 -0.37 -2.09 16 8 C 0.01 0.24 5.50 -104.70 -0.58 -0.34 16 9 C -0.10 -2.35 5.06 -104.84 -0.53 -2.88 16 10 C -0.01 -0.22 9.27 -16.95 -0.16 -0.38 16 11 N -0.47 -11.74 10.32 -12.27 -0.13 -11.86 16 12 C -0.01 -0.37 10.96 -16.72 -0.18 -0.56 16 13 C 0.06 1.58 5.59 -106.71 -0.60 0.99 16 14 C -0.45 -11.51 9.08 -37.73 -0.34 -11.85 16 15 H 0.08 2.04 7.90 -52.48 -0.41 1.62 16 16 C 0.07 1.79 5.19 -17.35 -0.09 1.70 16 17 N -0.79 -19.85 10.90 55.55 0.61 -19.25 16 18 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.11 -2.78 8.30 -38.23 -0.32 -3.09 16 23 H 0.08 0.83 7.75 -51.92 -0.40 0.43 16 24 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 25 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.12 1.49 5.88 -52.49 -0.31 1.18 16 27 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.13 2.21 8.05 -52.49 -0.42 1.79 16 30 H 0.13 2.80 7.05 -52.48 -0.37 2.43 16 31 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 32 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 33 H 0.13 3.39 6.19 -52.49 -0.32 3.06 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -28.26 295.85 -9.29 -37.55 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.47 Total: 7.62 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -3.64 Total: -28.15 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.48 Total: -31.11 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.08 Total: -3.36 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.26 -9.29 -37.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.535 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds