Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76197 * 103.00253 * 2 1 4 4 C 1.39138 * 120.42499 * 359.97438 * 3 2 1 5 5 N 1.31833 * 120.96587 * 180.02562 * 4 3 2 6 6 C 1.31706 * 121.96404 * 0.02562 * 5 4 3 7 7 C 1.39625 * 120.73379 * 0.02562 * 6 5 4 8 8 C 1.47998 * 120.51757 * 179.97438 * 7 6 5 9 9 C 1.39929 * 119.88387 * 179.72997 * 8 7 6 10 10 C 1.36253 * 120.12652 * 179.72321 * 9 8 7 11 11 C 1.40928 * 119.87249 * 0.52454 * 10 9 8 12 12 C 1.41031 * 120.11911 * 179.72201 * 11 10 9 13 13 H 1.07994 * 120.00267 * 155.05319 * 12 11 10 14 14 C 1.40017 * 119.99898 * 335.05620 * 12 11 10 15 15 N 1.30798 * 119.99920 * 342.13998 * 14 12 11 16 16 Si 1.86802 * 120.00075 * 162.13835 * 14 12 11 17 17 H 1.48502 * 109.46853 * 94.65229 * 16 14 12 18 18 H 1.48496 * 109.47253 * 214.65577 * 16 14 12 19 19 H 1.48500 * 109.46885 * 334.65752 * 16 14 12 20 20 C 1.40931 * 119.76521 * 359.74835 * 11 10 9 21 21 C 1.36252 * 119.87536 * 0.02562 * 20 11 10 22 22 C 1.39047 * 120.42687 * 180.32725 * 3 2 1 23 23 H 1.09004 * 109.46929 * 300.00140 * 1 2 3 24 24 H 1.08997 * 109.47171 * 60.00128 * 1 2 3 25 25 H 1.08997 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.51443 * 0.04314 * 4 3 2 27 27 H 1.07999 * 119.62959 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.93611 * 359.97438 * 9 8 7 29 29 H 1.08004 * 120.06597 * 180.27658 * 10 9 8 30 30 H 0.97003 * 119.99671 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.06168 * 179.97438 * 20 11 10 32 32 H 1.07999 * 119.93839 * 179.97438 * 21 20 11 33 33 H 1.07996 * 120.88986 * 359.97030 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.2000 2.6733 -0.0005 5 7 1.4845 3.9606 -0.0010 6 6 2.7260 4.4003 -0.0016 7 6 3.7992 3.5072 -0.0021 8 6 5.1924 4.0065 -0.0033 9 6 6.2581 3.0997 0.0018 10 6 7.5426 3.5539 -0.0049 11 6 7.7970 4.9401 -0.0059 12 6 9.1246 5.4160 -0.0069 13 1 9.3466 6.3962 -0.4021 14 6 10.1549 4.6175 0.5044 15 7 9.8730 3.6076 1.2863 16 14 11.9321 4.9945 0.0697 17 1 12.5322 5.8421 1.1312 18 1 12.6947 3.7251 -0.0404 19 1 11.9821 5.7161 -1.2272 20 6 6.7200 5.8490 -0.0053 21 6 5.4393 5.3839 -0.0032 22 6 3.5371 2.1332 -0.0068 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.1675 2.3565 -0.0002 27 1 2.9159 5.4634 -0.0016 28 1 6.0620 2.0376 0.0071 29 1 8.3644 2.8531 -0.0054 30 1 10.5867 3.0543 1.6402 31 1 6.9094 6.9123 -0.0056 32 1 4.6132 6.0795 -0.0023 33 1 4.3436 1.4150 -0.0118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242950205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = 42.239454 kcal Electronic energy + Delta-G solvation = -16924.796199 eV Core-core repulsion = 14233.696804 eV Total energy + Delta-G solvation = -2691.099395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64210 -37.58889 -34.24318 -32.35371 -31.63396 -29.72281 -29.51906 -28.53913 -25.49979 -23.53806 -22.84101 -20.75745 -20.26329 -17.71025 -17.27985 -16.53664 -15.89164 -15.44384 -14.86369 -14.44873 -14.07692 -13.84337 -13.38584 -13.28759 -12.99619 -12.89841 -12.65052 -12.09250 -11.99596 -11.72228 -11.36002 -11.20856 -10.93034 -10.81877 -10.58116 -10.15022 -9.98390 -9.60137 -9.57841 -9.05550 -8.92355 -7.75576 -7.45338 -7.21065 -7.02981 -4.55829 1.21263 1.52515 1.56249 2.40679 2.67012 2.93048 2.97282 2.97785 3.08730 3.72255 4.12306 4.54356 4.76875 4.92544 4.93399 5.18413 5.35041 5.41684 5.50582 5.52499 5.72453 5.96568 6.14473 6.19330 6.36127 6.50475 6.74996 6.82023 7.00705 7.07021 7.15720 7.39230 7.66886 7.81689 7.91887 8.02635 8.33256 8.37302 8.59292 8.71651 9.86108 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.035544 B = 0.003820 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.558310 B = 7328.881708 C = 8033.321306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.118 6.118 3 C -0.123 4.123 4 C 0.036 3.964 5 N -0.461 5.461 6 C 0.061 3.939 7 C 0.001 3.999 8 C -0.211 4.211 9 C -0.070 4.070 10 C -0.172 4.172 11 C 0.121 3.879 12 C -0.439 4.439 13 H 0.085 0.915 14 C 0.073 3.927 15 N -0.772 5.772 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.229 4.229 21 C -0.056 4.056 22 C -0.091 4.091 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.143 0.857 27 H 0.155 0.845 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.287 0.713 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 -4.720 -1.585 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.121 5.879 3 C -0.237 4.237 4 C -0.126 4.126 5 N -0.169 5.169 6 C -0.100 4.100 7 C -0.003 4.003 8 C -0.213 4.213 9 C -0.088 4.088 10 C -0.191 4.191 11 C 0.118 3.882 12 C -0.467 4.467 13 H 0.103 0.897 14 C -0.149 4.149 15 N -0.395 5.395 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.249 4.249 21 C -0.074 4.074 22 C -0.121 4.121 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.160 0.840 27 H 0.172 0.828 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.094 -5.353 -1.429 10.649 hybrid contribution 0.679 0.541 -0.007 0.868 sum -8.415 -4.812 -1.435 9.800 Atomic orbital electron populations 1.23628 0.95175 1.06819 1.05680 1.85391 1.05960 1.03481 1.93048 1.22569 0.97783 0.97062 1.06314 1.22435 0.97732 0.88343 1.04105 1.67393 1.22850 1.16102 1.10510 1.22818 0.86782 1.00155 1.00224 1.19887 0.94995 0.92233 0.93215 1.17865 0.89122 0.93318 1.21039 1.20503 0.92973 0.96836 0.98514 1.20990 0.95105 0.96016 1.07021 1.17770 0.92652 0.91724 0.86045 1.19796 0.91507 1.02338 1.33037 0.89727 1.26086 1.02475 0.93762 0.92534 1.69812 1.36123 1.13447 1.20083 0.86207 0.80523 0.79232 0.80407 1.19229 1.19704 1.18088 1.20696 0.92363 0.98063 1.13744 1.20383 0.96041 0.93480 0.97545 1.21186 0.94089 0.95839 1.01025 0.89781 0.89785 0.87582 0.83958 0.82798 0.89001 0.86282 0.90211 0.88443 0.88692 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.16 101.05 0.93 -0.35 16 2 S -0.12 -1.56 22.58 -107.50 -2.43 -3.98 16 3 C -0.12 -2.00 6.13 -38.95 -0.24 -2.24 16 4 C 0.04 0.57 10.54 -17.22 -0.18 0.39 16 5 N -0.46 -8.21 10.34 -12.70 -0.13 -8.34 16 6 C 0.06 1.11 10.60 -17.09 -0.18 0.93 16 7 C 0.00 0.01 5.89 -104.76 -0.62 -0.61 16 8 C -0.21 -4.57 5.90 -104.63 -0.62 -5.19 16 9 C -0.07 -1.57 9.37 -39.66 -0.37 -1.94 16 10 C -0.17 -4.22 8.63 -39.28 -0.34 -4.56 16 11 C 0.12 3.03 5.57 -106.80 -0.59 2.43 16 12 C -0.44 -10.79 9.03 -37.86 -0.34 -11.13 16 13 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 14 C 0.07 1.68 5.13 -17.33 -0.09 1.59 16 15 N -0.77 -18.52 10.97 55.55 0.61 -17.91 16 16 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 20 C -0.23 -5.28 9.73 -39.28 -0.38 -5.66 16 21 C -0.06 -1.20 9.37 -39.66 -0.37 -1.57 16 22 C -0.09 -1.65 9.30 -38.67 -0.36 -2.01 16 23 H 0.08 0.70 7.76 -51.92 -0.40 0.30 16 24 H 0.08 0.69 7.76 -51.93 -0.40 0.29 16 25 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.14 1.84 5.89 -52.49 -0.31 1.53 16 27 H 0.15 2.56 6.19 -52.49 -0.33 2.24 16 28 H 0.09 1.88 6.24 -52.49 -0.33 1.55 16 29 H 0.12 2.99 6.18 -52.48 -0.32 2.67 16 30 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 31 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.10 1.75 6.20 -52.49 -0.33 1.42 16 33 H 0.14 2.38 6.30 -52.49 -0.33 2.05 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -26.32 294.06 -9.45 -35.77 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.14 Total: 7.82 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -3.76 Total: -29.92 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.48 Total: -26.25 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.43 Total: -3.98 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.32 -9.45 -35.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242950205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.013 kcal (2) G-P(sol) polarization free energy of solvation -26.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds