Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76197 * 103.00253 * 2 1 4 4 C 1.39138 * 120.42499 * 359.97438 * 3 2 1 5 5 N 1.31833 * 120.96587 * 180.02562 * 4 3 2 6 6 C 1.31706 * 121.96404 * 0.02562 * 5 4 3 7 7 C 1.39625 * 120.73379 * 0.02562 * 6 5 4 8 8 C 1.47998 * 120.51757 * 179.97438 * 7 6 5 9 9 C 1.39929 * 119.88387 * 179.72997 * 8 7 6 10 10 C 1.36253 * 120.12652 * 179.72321 * 9 8 7 11 11 C 1.40928 * 119.87249 * 0.52454 * 10 9 8 12 12 C 1.41031 * 120.11911 * 179.72201 * 11 10 9 13 13 H 1.07994 * 120.00267 * 155.05319 * 12 11 10 14 14 C 1.40017 * 119.99898 * 335.05620 * 12 11 10 15 15 N 1.30798 * 119.99920 * 342.13998 * 14 12 11 16 16 Si 1.86802 * 120.00075 * 162.13835 * 14 12 11 17 17 H 1.48502 * 109.46853 * 94.65229 * 16 14 12 18 18 H 1.48496 * 109.47253 * 214.65577 * 16 14 12 19 19 H 1.48500 * 109.46885 * 334.65752 * 16 14 12 20 20 C 1.40931 * 119.76521 * 359.74835 * 11 10 9 21 21 C 1.36252 * 119.87536 * 0.02562 * 20 11 10 22 22 C 1.39047 * 120.42687 * 180.32725 * 3 2 1 23 23 H 1.09004 * 109.46929 * 300.00140 * 1 2 3 24 24 H 1.08997 * 109.47171 * 60.00128 * 1 2 3 25 25 H 1.08997 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.51443 * 0.04314 * 4 3 2 27 27 H 1.07999 * 119.62959 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.93611 * 359.97438 * 9 8 7 29 29 H 1.08004 * 120.06597 * 180.27658 * 10 9 8 30 30 H 0.97003 * 119.99671 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.06168 * 179.97438 * 20 11 10 32 32 H 1.07999 * 119.93839 * 179.97438 * 21 20 11 33 33 H 1.07996 * 120.88986 * 359.97030 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.2000 2.6733 -0.0005 5 7 1.4845 3.9606 -0.0010 6 6 2.7260 4.4003 -0.0016 7 6 3.7992 3.5072 -0.0021 8 6 5.1924 4.0065 -0.0033 9 6 6.2581 3.0997 0.0018 10 6 7.5426 3.5539 -0.0049 11 6 7.7970 4.9401 -0.0059 12 6 9.1246 5.4160 -0.0069 13 1 9.3466 6.3962 -0.4021 14 6 10.1549 4.6175 0.5044 15 7 9.8730 3.6076 1.2863 16 14 11.9321 4.9945 0.0697 17 1 12.5322 5.8421 1.1312 18 1 12.6947 3.7251 -0.0404 19 1 11.9821 5.7161 -1.2272 20 6 6.7200 5.8490 -0.0053 21 6 5.4393 5.3839 -0.0032 22 6 3.5371 2.1332 -0.0068 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.1675 2.3565 -0.0002 27 1 2.9159 5.4634 -0.0016 28 1 6.0620 2.0376 0.0071 29 1 8.3644 2.8531 -0.0054 30 1 10.5867 3.0543 1.6402 31 1 6.9094 6.9123 -0.0056 32 1 4.6132 6.0795 -0.0023 33 1 4.3436 1.4150 -0.0118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242950205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = 30.219586 kcal Electronic energy + Delta-G solvation = -16925.317419 eV Core-core repulsion = 14233.696804 eV Total energy + Delta-G solvation = -2691.620615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07089 -39.28730 -35.93002 -33.87610 -33.04032 -31.47313 -30.81610 -29.66003 -27.15321 -24.97464 -24.36385 -22.44231 -21.92132 -19.42739 -18.65166 -17.82320 -17.37271 -17.02291 -16.33376 -15.82078 -15.22749 -15.12879 -15.01395 -14.53382 -14.42404 -14.32685 -13.72490 -13.63910 -13.50222 -13.35251 -12.87490 -12.81862 -12.46859 -12.29710 -11.81889 -11.54859 -11.43059 -11.30410 -11.23404 -10.62847 -10.32157 -9.53637 -9.00670 -8.74229 -8.45262 -6.37696 -0.21275 0.14676 0.49049 1.06992 1.16809 1.38372 1.44699 1.50788 1.56247 2.16316 2.56126 2.94463 3.49877 3.72738 3.82900 3.92759 4.00935 4.21298 4.29002 4.32359 4.37242 4.56234 4.66999 4.85745 4.93745 4.96884 5.01989 5.12010 5.29519 5.41691 5.59600 5.63207 5.93536 6.02587 6.15374 6.25677 6.58279 6.80896 6.91183 6.97058 8.19392 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.035544 B = 0.003820 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.558310 B = 7328.881708 C = 8033.321306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.132 6.132 3 C -0.127 4.127 4 C 0.049 3.951 5 N -0.472 5.472 6 C 0.061 3.939 7 C -0.024 4.024 8 C -0.206 4.206 9 C -0.079 4.079 10 C -0.194 4.194 11 C 0.091 3.909 12 C -0.480 4.480 13 H 0.085 0.915 14 C 0.035 3.965 15 N -0.809 5.809 16 Si 0.986 3.014 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.256 1.256 20 C -0.244 4.244 21 C -0.060 4.060 22 C -0.097 4.097 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.132 0.868 26 H 0.179 0.821 27 H 0.167 0.833 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.293 0.707 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 -5.454 -1.800 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.108 5.892 3 C -0.241 4.241 4 C -0.114 4.114 5 N -0.180 5.180 6 C -0.099 4.099 7 C -0.028 4.028 8 C -0.208 4.208 9 C -0.097 4.097 10 C -0.213 4.213 11 C 0.088 3.912 12 C -0.507 4.507 13 H 0.103 0.897 14 C -0.183 4.183 15 N -0.433 5.433 16 Si 0.806 3.194 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.180 1.180 20 C -0.263 4.263 21 C -0.078 4.078 22 C -0.128 4.128 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.150 0.850 26 H 0.196 0.804 27 H 0.184 0.816 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.591 -6.092 -1.643 13.197 hybrid contribution 0.993 0.571 0.059 1.147 sum -10.598 -5.522 -1.584 12.055 Atomic orbital electron populations 1.23825 0.90944 1.08968 1.06833 1.85542 1.10539 1.00663 1.92415 1.22801 0.96969 0.99351 1.05015 1.23092 0.99345 0.87680 1.01260 1.67488 1.22285 1.17131 1.11075 1.22988 0.86707 1.00656 0.99529 1.19823 0.94086 0.93249 0.95654 1.18146 0.90187 0.93418 1.19007 1.20703 0.92695 0.97932 0.98367 1.20953 0.95515 0.95961 1.08904 1.18104 0.93717 0.92292 0.87092 1.20012 0.92331 1.03176 1.35216 0.89703 1.26905 1.06380 0.93272 0.91728 1.69858 1.37637 1.14627 1.21178 0.85132 0.75109 0.79174 0.80030 1.18506 1.18943 1.17984 1.20914 0.92797 0.98434 1.14138 1.20696 0.96346 0.94082 0.96716 1.21316 0.95345 0.95421 1.00736 0.88613 0.88548 0.84984 0.80409 0.81582 0.87645 0.87837 0.89574 0.87489 0.85597 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.16 113.37 1.04 -0.74 16 2 S -0.13 -3.08 22.58 -56.49 -1.28 -4.35 16 3 C -0.13 -3.81 6.13 22.68 0.14 -3.67 16 4 C 0.05 1.38 10.54 84.91 0.89 2.28 16 5 N -0.47 -15.45 10.34 -194.10 -2.01 -17.46 16 6 C 0.06 2.12 10.60 85.05 0.90 3.02 16 7 C -0.02 -0.93 5.89 -19.96 -0.12 -1.05 16 8 C -0.21 -8.95 5.90 -19.87 -0.12 -9.07 16 9 C -0.08 -3.66 9.37 22.22 0.21 -3.45 16 10 C -0.19 -10.03 8.63 22.47 0.19 -9.83 16 11 C 0.09 4.75 5.57 -21.28 -0.12 4.64 16 12 C -0.48 -24.71 9.03 23.39 0.21 -24.50 16 13 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 14 C 0.03 1.66 5.13 85.28 0.44 2.10 16 15 N -0.81 -40.58 10.97 21.84 0.24 -40.34 16 16 Si 0.99 36.07 29.60 68.60 2.03 38.10 16 17 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 18 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 20 C -0.24 -11.53 9.73 22.47 0.22 -11.31 16 21 C -0.06 -2.58 9.37 22.22 0.21 -2.38 16 22 C -0.10 -3.43 9.30 22.86 0.21 -3.22 16 23 H 0.09 1.10 7.76 -2.39 -0.02 1.08 16 24 H 0.10 1.09 7.76 -2.39 -0.02 1.07 16 25 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.18 3.69 5.89 -2.91 -0.02 3.68 16 27 H 0.17 5.19 6.19 -2.91 -0.02 5.17 16 28 H 0.11 4.45 6.24 -2.91 -0.02 4.44 16 29 H 0.10 5.56 6.18 -2.91 -0.02 5.54 16 30 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 31 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.13 4.47 6.20 -2.91 -0.02 4.45 16 33 H 0.13 4.64 6.30 -2.91 -0.02 4.62 16 Total: -1.00 -58.82 294.06 4.44 -54.38 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 1.14 Total: 26.85 kcal Atomic # 6 Polarization: -61.49 SS G_CDS: 4.31 Total: -57.18 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -1.77 Total: -57.80 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -1.28 Total: -4.35 kcal Total: -58.82 4.44 -54.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242950205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.602 kcal (2) G-P(sol) polarization free energy of solvation -58.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds