Wall clock time and date at job start Mon Mar 30 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76198 * 103.00180 * 2 1 4 4 C 1.39148 * 120.42183 * 359.97438 * 3 2 1 5 5 N 1.31844 * 120.97629 * 180.02562 * 4 3 2 6 6 C 1.31698 * 121.96420 * 359.97438 * 5 4 3 7 7 C 1.39661 * 120.73331 * 359.97438 * 6 5 4 8 8 C 1.47897 * 120.52474 * 180.02562 * 7 6 5 9 9 C 1.39149 * 120.33814 * 129.99831 * 8 7 6 10 10 C 1.38096 * 119.98773 * 179.72241 * 9 8 7 11 11 C 1.38922 * 120.67011 * 0.02562 * 10 9 8 12 12 C 1.36439 * 120.68109 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.99266 * 0.02562 * 12 11 10 14 14 C 1.40882 * 120.33200 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00147 * 149.37027 * 14 13 12 16 16 C 1.40077 * 119.99805 * 329.37157 * 14 13 12 17 17 N 1.30774 * 119.99549 * 162.46068 * 16 14 13 18 18 Si 1.86797 * 120.00323 * 342.45961 * 16 14 13 19 19 H 1.48499 * 109.47159 * 95.37077 * 18 16 14 20 20 H 1.48489 * 109.47269 * 215.37560 * 18 16 14 21 21 H 1.48500 * 109.46808 * 335.37683 * 18 16 14 22 22 C 1.39043 * 120.42726 * 180.19513 * 3 2 1 23 23 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47082 * 299.99951 * 1 2 3 25 25 H 1.08998 * 109.46934 * 60.00446 * 1 2 3 26 26 H 1.08002 * 119.51210 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.62933 * 180.02562 * 6 5 4 28 28 H 1.08000 * 120.00405 * 359.74605 * 9 8 7 29 29 H 1.08000 * 119.66597 * 179.97438 * 10 9 8 30 30 H 1.07992 * 119.66035 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.00449 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99721 * 180.02562 * 17 16 14 33 33 H 1.08000 * 120.89044 * 0.04043 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1998 2.6733 -0.0005 5 7 1.4839 3.9607 -0.0010 6 6 2.7252 4.4007 -0.0006 7 6 3.7990 3.5077 0.0010 8 6 5.1912 4.0069 0.0021 9 6 6.1124 3.5180 0.9233 10 6 7.4120 3.9850 0.9142 11 6 7.8143 4.9429 -0.0081 12 6 6.9337 5.4410 -0.9235 13 6 5.6022 4.9850 -0.9395 14 6 4.6868 5.4948 -1.8813 15 1 3.8817 4.8727 -2.2434 16 6 4.8210 6.8087 -2.3481 17 7 4.2133 7.1778 -3.4457 18 14 5.8680 8.0334 -1.4030 19 1 7.2331 8.0716 -1.9863 20 1 5.2536 9.3823 -1.4921 21 1 5.9496 7.6197 0.0209 22 6 3.5370 2.1332 -0.0041 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.1673 2.3564 -0.0014 27 1 2.9149 5.4640 -0.0006 28 1 5.8112 2.7732 1.6451 29 1 8.1226 3.6023 1.6318 30 1 8.8345 5.2969 -0.0004 31 1 7.2581 6.1857 -1.6353 32 1 4.3065 8.0876 -3.7691 33 1 4.3435 1.4150 -0.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242950237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:11 Heat of formation + Delta-G solvation = 31.214066 kcal Electronic energy + Delta-G solvation = -17582.167225 eV Core-core repulsion = 14890.589734 eV Total energy + Delta-G solvation = -2691.577492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10432 -39.37529 -35.58957 -34.18989 -33.09842 -32.21847 -30.55638 -29.44097 -27.14330 -24.75056 -24.56225 -22.92881 -21.75671 -19.39042 -18.56369 -17.82635 -17.38931 -17.28970 -16.39464 -15.78880 -15.63778 -15.23842 -14.97536 -14.67443 -14.35751 -14.23506 -14.06735 -13.87804 -13.51249 -13.39177 -12.96721 -12.73820 -12.49711 -12.18055 -11.84212 -11.62331 -11.47492 -11.39811 -11.04270 -10.53952 -10.27184 -9.49752 -9.20978 -8.92219 -8.41188 -6.48426 -0.08728 0.19365 0.49825 0.82233 0.93902 1.26297 1.41375 1.44649 1.48693 2.10072 2.60031 2.77997 3.46697 3.53087 3.82968 3.94723 4.08257 4.28338 4.28747 4.32750 4.39998 4.52034 4.57412 4.77732 4.84418 4.90306 4.92491 5.04480 5.27771 5.32122 5.52313 5.63998 5.84635 5.90218 6.00170 6.21823 6.38516 6.71298 6.79539 6.98897 8.15412 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.006035 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.928699 B = 4638.417562 C = 5526.739848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.119 6.119 3 C -0.140 4.140 4 C 0.061 3.939 5 N -0.490 5.490 6 C 0.099 3.901 7 C -0.031 4.031 8 C -0.180 4.180 9 C -0.062 4.062 10 C -0.228 4.228 11 C -0.075 4.075 12 C -0.246 4.246 13 C 0.091 3.909 14 C -0.463 4.463 15 H 0.054 0.946 16 C 0.051 3.949 17 N -0.842 5.842 18 Si 0.960 3.040 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.250 1.250 22 C -0.073 4.073 23 H 0.134 0.866 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.179 0.821 27 H 0.142 0.858 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.294 0.706 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.696 -9.376 7.666 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.120 5.880 3 C -0.254 4.254 4 C -0.101 4.101 5 N -0.198 5.198 6 C -0.060 4.060 7 C -0.035 4.035 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.247 4.247 11 C -0.093 4.093 12 C -0.265 4.265 13 C 0.088 3.912 14 C -0.492 4.492 15 H 0.073 0.927 16 C -0.165 4.165 17 N -0.467 5.467 18 Si 0.784 3.216 19 H -0.182 1.182 20 H -0.207 1.207 21 H -0.173 1.173 22 C -0.104 4.104 23 H 0.153 0.847 24 H 0.115 0.885 25 H 0.109 0.891 26 H 0.195 0.805 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.880 -9.651 7.432 12.517 hybrid contribution 0.086 1.402 -0.388 1.457 sum -2.794 -8.249 7.044 11.201 Atomic orbital electron populations 1.23827 0.91393 1.08983 1.06658 1.85316 1.10093 0.99890 1.92668 1.22824 0.97015 0.99583 1.06020 1.23197 0.99617 0.87642 0.99662 1.67509 1.22564 1.17499 1.12233 1.22860 0.87061 1.00297 0.95804 1.19684 0.94284 0.92943 0.96591 1.18690 0.91806 1.06497 1.01263 1.21038 0.93044 0.97513 0.96419 1.20818 0.96398 1.03671 1.03800 1.20841 0.98878 0.95687 0.93924 1.20915 0.94090 1.07117 1.04403 1.17786 0.92166 0.91074 0.90185 1.19278 1.11756 0.98332 1.19790 0.92741 1.26830 0.95060 1.00827 0.93802 1.69704 1.37527 1.21169 1.18350 0.85557 0.78532 0.76381 0.81167 1.18180 1.20662 1.17328 1.21440 0.95424 0.94816 0.98748 0.84749 0.88541 0.89127 0.80451 0.84036 0.85916 0.84865 0.85387 0.88358 0.89540 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.16 113.37 1.04 -1.08 16 2 S -0.12 -2.91 22.58 -56.49 -1.28 -4.18 16 3 C -0.14 -4.58 6.13 22.68 0.14 -4.44 16 4 C 0.06 2.06 10.54 84.91 0.89 2.95 16 5 N -0.49 -20.03 10.34 -194.06 -2.01 -22.03 16 6 C 0.10 4.40 9.27 85.06 0.79 5.19 16 7 C -0.03 -1.34 4.94 -19.97 -0.10 -1.44 16 8 C -0.18 -8.06 5.54 -19.60 -0.11 -8.17 16 9 C -0.06 -2.38 9.54 22.45 0.21 -2.16 16 10 C -0.23 -8.17 10.03 22.40 0.22 -7.95 16 11 C -0.08 -2.89 9.96 22.01 0.22 -2.67 16 12 C -0.25 -11.17 7.10 22.46 0.16 -11.01 16 13 C 0.09 4.47 5.09 -21.12 -0.11 4.37 16 14 C -0.46 -25.14 7.54 23.36 0.18 -24.97 16 15 H 0.05 3.29 7.02 -2.91 -0.02 3.27 16 16 C 0.05 2.65 5.41 85.30 0.46 3.11 16 17 N -0.84 -45.73 13.93 21.85 0.30 -45.43 16 18 Si 0.96 41.78 24.52 68.60 1.68 43.46 16 19 H -0.26 -10.51 6.72 99.48 0.67 -9.84 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.25 -11.03 6.85 99.48 0.68 -10.35 16 22 C -0.07 -2.71 9.46 22.87 0.22 -2.50 16 23 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.10 1.29 7.76 -2.39 -0.02 1.27 16 25 H 0.09 1.33 7.76 -2.39 -0.02 1.31 16 26 H 0.18 4.54 5.89 -2.91 -0.02 4.52 16 27 H 0.14 6.74 7.32 -2.91 -0.02 6.72 16 28 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.10 4.46 4.79 -2.91 -0.01 4.45 16 32 H 0.29 14.38 8.29 -92.71 -0.77 13.61 16 33 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -60.92 290.95 3.99 -56.93 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 1.06 Total: 22.01 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 4.22 Total: -50.76 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -1.70 Total: -67.46 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.68 Total: 43.46 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -1.28 Total: -4.18 kcal Total: -60.92 3.99 -56.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242950237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.143 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds