Wall clock time and date at job start Mon Mar 30 2020 00:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76202 * 103.00190 * 2 1 4 4 C 1.39070 * 120.43612 * 0.02562 * 3 2 1 5 5 N 1.31798 * 120.90862 * 179.97438 * 4 3 2 6 6 C 1.31757 * 121.93737 * 0.04530 * 5 4 3 7 7 C 1.39347 * 120.77259 * 359.94960 * 6 5 4 8 8 C 1.48420 * 120.49133 * 180.29464 * 7 6 5 9 9 C 1.39718 * 120.00119 * 179.45262 * 8 7 6 10 10 C 1.38397 * 120.38295 * 179.72460 * 9 8 7 11 11 C 1.37715 * 120.37611 * 0.55660 * 10 9 8 12 12 C 1.40756 * 119.98881 * 359.72087 * 11 10 9 13 13 C 1.41426 * 120.18811 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00255 * 154.80156 * 13 12 11 15 15 C 1.39932 * 119.99554 * 334.80426 * 13 12 11 16 16 N 1.30836 * 120.00179 * 342.72573 * 15 13 12 17 17 Si 1.86804 * 119.99834 * 162.73376 * 15 13 12 18 18 H 1.48501 * 109.46736 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47412 * 119.99399 * 17 15 13 20 20 H 1.48494 * 109.46788 * 239.99786 * 17 15 13 21 21 C 1.38725 * 120.00041 * 359.72975 * 8 7 6 22 22 C 1.39129 * 120.43922 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47326 * 59.99888 * 1 2 3 24 24 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47139 * 299.99706 * 1 2 3 26 26 H 1.07998 * 119.54266 * 359.97438 * 4 3 2 27 27 H 1.07993 * 119.61141 * 179.97438 * 6 5 4 28 28 H 1.08005 * 119.80897 * 0.02562 * 9 8 7 29 29 H 1.07995 * 119.80849 * 180.25861 * 10 9 8 30 30 H 1.07998 * 120.00575 * 179.70239 * 11 10 9 31 31 H 0.96995 * 119.99584 * 180.02562 * 16 15 13 32 32 H 1.08004 * 120.18800 * 0.02562 * 21 8 7 33 33 H 1.07998 * 120.88147 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2006 2.6730 0.0005 5 7 1.4865 3.9596 0.0010 6 6 2.7292 4.3975 0.0002 7 6 3.7995 3.5051 -0.0003 8 6 5.1969 4.0052 0.0054 9 6 6.2623 3.1013 0.0164 10 6 7.5685 3.5588 0.0160 11 6 7.8329 4.9104 0.0162 12 6 6.7716 5.8349 0.0109 13 6 7.0383 7.2238 0.0105 14 1 6.3108 7.9133 -0.3914 15 6 8.2451 7.7045 0.5308 16 7 8.9704 6.9443 1.3105 17 14 8.8204 9.4318 0.1124 18 1 7.8279 10.0812 -0.7811 19 1 8.9563 10.2244 1.3608 20 1 10.1346 9.3626 -0.5755 21 6 5.4453 5.3700 0.0054 22 6 3.5378 2.1338 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1679 2.3569 0.0005 27 1 2.9205 5.4603 0.0002 28 1 6.0655 2.0394 0.0204 29 1 8.3849 2.8520 0.0204 30 1 8.8544 5.2608 0.0207 31 1 9.8066 7.2778 1.6714 32 1 4.6240 6.0714 0.0018 33 1 4.3444 1.4156 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242950616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:14 Heat of formation + Delta-G solvation = 44.437476 kcal Electronic energy + Delta-G solvation = -16963.634413 eV Core-core repulsion = 14272.630331 eV Total energy + Delta-G solvation = -2691.004082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86177 -37.49225 -34.06485 -32.43581 -31.85273 -29.99307 -29.43889 -27.94448 -25.52221 -23.51126 -23.38520 -20.57750 -20.38165 -17.85217 -16.96195 -16.57043 -16.04048 -15.38853 -14.80930 -14.57093 -14.21028 -13.91508 -13.52358 -13.28741 -13.09549 -12.87773 -12.73326 -12.38792 -11.78174 -11.56543 -11.34737 -11.14042 -10.86714 -10.74279 -10.53280 -10.29744 -9.88611 -9.61907 -9.51325 -9.13765 -9.06281 -7.61758 -7.53472 -7.15237 -6.83825 -4.45908 1.04710 1.38344 1.40105 2.28312 2.70482 2.92623 3.04431 3.09439 3.14424 3.88205 4.07216 4.59029 4.59652 4.84157 4.84362 4.98985 5.13923 5.25444 5.41724 5.57699 5.58684 5.77468 6.05858 6.21777 6.31772 6.38453 6.73520 6.83858 6.96855 7.11518 7.20794 7.42021 7.69122 7.89114 7.92692 8.08996 8.18662 8.50865 8.78648 8.82649 10.11350 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.040935 B = 0.003822 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.854885 B = 7324.326820 C = 7921.504141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.113 6.113 3 C -0.137 4.137 4 C 0.063 3.937 5 N -0.466 5.466 6 C 0.091 3.909 7 C -0.035 4.035 8 C -0.044 4.044 9 C -0.216 4.216 10 C -0.107 4.107 11 C -0.149 4.149 12 C 0.107 3.893 13 C -0.463 4.463 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.908 3.092 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.198 4.198 22 C -0.062 4.062 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.281 0.719 32 H 0.100 0.900 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 -8.540 -1.771 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.127 5.873 3 C -0.252 4.252 4 C -0.099 4.099 5 N -0.174 5.174 6 C -0.068 4.068 7 C -0.039 4.039 8 C -0.045 4.045 9 C -0.236 4.236 10 C -0.126 4.126 11 C -0.168 4.168 12 C 0.104 3.896 13 C -0.492 4.492 14 H 0.098 0.902 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.218 4.218 22 C -0.093 4.093 23 H 0.103 0.897 24 H 0.126 0.874 25 H 0.103 0.897 26 H 0.165 0.835 27 H 0.181 0.819 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.713 -8.966 -1.621 13.318 hybrid contribution 0.247 1.199 -0.016 1.224 sum -9.466 -7.767 -1.637 12.354 Atomic orbital electron populations 1.23656 0.95003 1.07024 1.05767 1.85412 1.06118 1.02816 1.92981 1.22646 0.97737 0.97567 1.07209 1.22639 0.98065 0.88394 1.00832 1.67543 1.22671 1.16040 1.11162 1.23029 0.86588 1.00794 0.96423 1.20070 0.95428 0.92540 0.95876 1.18129 0.88718 0.93940 1.03702 1.20412 0.92478 0.96604 1.14082 1.20638 0.94944 0.95771 1.01218 1.21474 0.99880 0.91446 1.04022 1.17541 0.90286 0.93619 0.88105 1.19605 1.01703 0.92423 1.35510 0.90193 1.25907 0.95862 0.99893 0.92529 1.69817 1.12298 1.37845 1.21972 0.86256 0.79413 0.81760 0.79307 1.18324 1.19958 1.19686 1.21083 0.96593 0.92551 1.11556 1.21286 0.94306 0.95870 0.97845 0.89692 0.87415 0.89680 0.83481 0.81929 0.89041 0.88931 0.86185 0.90810 0.88242 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.16 101.05 0.93 -0.22 16 2 S -0.11 -1.35 22.58 -107.50 -2.43 -3.78 16 3 C -0.14 -2.07 6.13 -38.94 -0.24 -2.30 16 4 C 0.06 0.94 10.54 -17.26 -0.18 0.76 16 5 N -0.47 -7.98 10.34 -12.79 -0.13 -8.12 16 6 C 0.09 1.65 10.59 -17.17 -0.18 1.46 16 7 C -0.04 -0.67 5.89 -104.78 -0.62 -1.29 16 8 C -0.04 -0.95 5.87 -104.97 -0.62 -1.57 16 9 C -0.22 -4.65 9.45 -38.97 -0.37 -5.02 16 10 C -0.11 -2.42 10.01 -39.71 -0.40 -2.81 16 11 C -0.15 -3.72 8.69 -38.82 -0.34 -4.06 16 12 C 0.11 2.74 5.56 -106.86 -0.59 2.14 16 13 C -0.46 -11.84 9.05 -37.73 -0.34 -12.18 16 14 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 15 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 16 N -0.79 -19.94 10.97 55.55 0.61 -19.33 16 17 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.20 -4.64 9.18 -38.53 -0.35 -4.99 16 22 C -0.06 -1.06 9.30 -38.74 -0.36 -1.42 16 23 H 0.08 0.62 7.76 -51.92 -0.40 0.21 16 24 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.08 0.62 7.76 -51.93 -0.40 0.22 16 26 H 0.15 1.72 5.89 -52.49 -0.31 1.41 16 27 H 0.16 2.80 6.21 -52.49 -0.33 2.47 16 28 H 0.09 1.73 6.25 -52.48 -0.33 1.41 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16 31 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 32 H 0.10 2.15 6.21 -52.48 -0.33 1.82 16 33 H 0.14 2.26 6.31 -52.49 -0.33 1.93 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -27.20 294.31 -9.44 -36.64 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -3.14 Total: 6.77 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -3.75 Total: -29.74 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 0.48 Total: -27.44 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.43 Total: -3.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.20 -9.44 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242950616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.076 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds