Wall clock time and date at job start Mon Mar 30 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40141 * 120.47095 * 98.79220 * 3 2 1 5 5 C 1.38149 * 118.36511 * 180.02562 * 4 3 2 6 6 C 1.39389 * 119.22428 * 0.02562 * 5 4 3 7 7 C 1.48424 * 119.55957 * 180.02562 * 6 5 4 8 8 N 1.30746 * 126.40814 * 359.96994 * 7 6 5 9 9 O 1.21289 * 110.09909 * 180.02562 * 8 7 6 10 10 C 1.33674 * 110.02397 * 0.02562 * 9 8 7 11 11 C 1.50700 * 126.44251 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47551 * 195.02334 * 11 10 9 13 13 N 1.46900 * 109.47395 * 315.02796 * 11 10 9 14 14 C 1.50702 * 109.46869 * 75.02388 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 N 1.30961 * 107.12256 * 0.24116 * 10 9 8 23 23 N 1.32699 * 120.88830 * 0.26784 * 6 5 4 24 24 C 1.31498 * 121.78465 * 359.44002 * 23 6 5 25 25 H 1.07995 * 120.82010 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.38876 * 179.97438 * 5 4 3 27 27 H 1.00907 * 110.99792 * 296.04461 * 13 11 10 28 28 H 1.00903 * 111.00086 * 59.99217 * 13 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 30 30 H 1.07995 * 119.65875 * 180.28489 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2786 0.1856 -1.1937 5 6 4.6591 0.1779 -1.1436 6 6 5.2946 -0.0125 0.0823 7 6 6.7775 -0.0215 0.1448 8 7 7.5976 0.1348 -0.8614 9 8 8.7461 0.0751 -0.4762 10 6 8.7759 -0.1305 0.8443 11 6 10.0079 -0.2643 1.7018 12 1 9.7333 -0.6845 2.6693 13 7 10.9723 -1.1518 1.0384 14 6 10.6302 1.0935 1.9023 15 1 10.1786 1.9661 1.4539 16 6 11.7728 1.2226 2.6633 17 7 12.3225 0.1601 3.2095 18 14 12.5398 2.9066 2.9180 19 1 11.7351 3.9303 2.2041 20 1 12.5682 3.2233 4.3687 21 1 13.9257 2.9053 2.3845 22 7 7.5333 -0.1996 1.2519 23 7 4.5916 -0.1906 1.1936 24 6 3.2767 -0.1846 1.1899 25 1 2.7598 0.3297 -2.1298 26 1 5.2393 0.3170 -2.0439 27 1 10.6025 -2.0865 0.9505 28 1 11.2428 -0.7839 0.1386 29 1 13.1265 0.2509 3.7446 30 1 2.7390 -0.3284 2.1153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225608.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:57 Heat of formation + Delta-G solvation = 141.827535 kcal Electronic energy + Delta-G solvation = -18780.986703 eV Core-core repulsion = 15580.205308 eV Total energy + Delta-G solvation = -3200.781395 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.02898 -40.65059 -37.05297 -35.55653 -35.04695 -33.10598 -32.60744 -31.67132 -30.44389 -26.55979 -25.97584 -24.48020 -23.42855 -22.79885 -20.80468 -19.48447 -17.82017 -17.57195 -16.98770 -16.44223 -16.08621 -14.91515 -14.88821 -14.79605 -14.61145 -14.02001 -13.78999 -13.58905 -13.47196 -13.33695 -12.88899 -12.55816 -12.21828 -11.49946 -11.46813 -11.01453 -10.93758 -10.55088 -10.40221 -10.29374 -9.99509 -9.94117 -9.38894 -8.97075 -8.64381 -7.68065 -6.12226 -4.30257 -0.10669 0.78639 1.65468 2.21395 2.39928 2.92263 3.14932 3.25031 3.33586 3.36850 3.41480 3.56051 3.59455 3.96028 4.23715 4.33112 4.48127 4.67984 4.83584 5.15450 5.21729 5.31899 5.49531 5.59829 5.90878 5.98516 6.29866 6.42405 6.96857 7.01119 7.46678 7.63149 7.76622 8.18871 8.56779 8.65219 8.79463 9.40049 10.92425 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035565 B = 0.003623 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.094773 B = 7726.065996 C = 7950.991769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.261 3.739 3 C -0.082 4.082 4 C -0.023 4.023 5 C -0.141 4.141 6 C 0.248 3.752 7 C 0.186 3.814 8 N -0.382 5.382 9 O 0.079 5.921 10 C 0.202 3.798 11 C 0.309 3.691 12 H 0.091 0.909 13 N -0.798 5.798 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.090 3.910 17 N -0.840 5.840 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.281 1.281 22 N -0.472 5.472 23 N -0.442 5.442 24 C 0.162 3.838 25 H 0.152 0.848 26 H 0.155 0.845 27 H 0.308 0.692 28 H 0.331 0.669 29 H 0.262 0.738 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 -1.443 -7.782 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.056 4.056 3 C -0.088 4.088 4 C -0.051 4.051 5 C -0.163 4.163 6 C 0.110 3.890 7 C -0.085 4.085 8 N -0.092 5.092 9 O 0.018 5.982 10 C -0.020 4.020 11 C 0.196 3.804 12 H 0.108 0.892 13 N -0.325 5.325 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.119 4.119 17 N -0.473 5.473 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.207 1.207 22 N -0.204 5.204 23 N -0.151 5.151 24 C -0.001 4.001 25 H 0.170 0.830 26 H 0.173 0.827 27 H 0.119 0.881 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.916 -1.456 -6.756 15.537 hybrid contribution -0.180 0.963 -1.300 1.628 sum -14.095 -0.493 -8.056 16.243 Atomic orbital electron populations 1.81288 1.11768 1.08427 1.06854 1.25305 0.92136 0.93918 0.94202 1.17154 0.85730 1.09293 0.96617 1.21563 0.93295 0.92674 0.97525 1.22005 0.94580 1.00687 0.99006 1.18194 0.88012 0.93588 0.89215 1.23341 0.94770 1.04154 0.86212 1.74753 0.90301 1.20874 1.23247 1.85240 1.21960 1.64384 1.26654 1.32408 0.98716 0.89198 0.81641 1.18465 0.76844 0.95696 0.89416 0.89189 1.59148 1.42875 1.03124 1.27306 1.20661 1.11989 0.90171 1.35502 0.92188 1.24866 0.96089 0.96711 0.94215 1.70084 1.19246 1.28016 1.29916 0.86478 0.79208 0.83867 0.78067 1.19717 1.20740 1.20668 1.72212 1.00519 1.21337 1.26350 1.67685 1.07168 1.11237 1.29001 1.23037 0.88800 0.91444 0.96769 0.82984 0.82686 0.88124 0.85636 0.92814 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.67 18.54 41.84 0.78 -3.89 16 2 C 0.26 2.41 15.37 -22.47 -0.35 2.07 16 3 C -0.08 -0.69 5.75 -106.70 -0.61 -1.31 16 4 C -0.02 -0.17 9.89 -38.90 -0.38 -0.56 16 5 C -0.14 -1.46 9.71 -39.19 -0.38 -1.84 16 6 C 0.25 3.58 6.76 -82.87 -0.56 3.02 16 7 C 0.19 3.38 7.90 -156.13 -1.23 2.14 16 8 N -0.38 -6.91 11.82 30.96 0.37 -6.54 16 9 O 0.08 1.52 11.27 18.02 0.20 1.73 16 10 C 0.20 4.22 7.22 -12.99 -0.09 4.13 16 11 C 0.31 7.05 3.15 -70.02 -0.22 6.83 16 12 H 0.09 2.24 8.14 -51.93 -0.42 1.82 16 13 N -0.80 -16.63 8.54 -6.65 -0.06 -16.69 16 14 C -0.54 -13.83 8.71 -34.44 -0.30 -14.13 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.09 2.32 5.39 -17.82 -0.10 2.23 16 17 N -0.84 -22.41 12.78 55.43 0.71 -21.70 16 18 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 N -0.47 -9.83 11.56 -9.89 -0.11 -9.95 16 23 N -0.44 -6.21 10.27 -9.42 -0.10 -6.31 16 24 C 0.16 1.60 10.91 -17.14 -0.19 1.41 16 25 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 26 H 0.16 1.44 7.85 -52.49 -0.41 1.03 16 27 H 0.31 5.60 9.06 -39.29 -0.36 5.24 16 28 H 0.33 6.50 8.96 -39.29 -0.35 6.15 16 29 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -29.39 292.57 -5.17 -34.56 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -1.93 Total: 5.40 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -4.41 Total: 3.98 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: 1.58 Total: -65.07 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.39 -5.17 -34.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225608.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.389 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds