Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40141 * 120.47095 * 98.79220 * 3 2 1 5 5 C 1.38149 * 118.36511 * 180.02562 * 4 3 2 6 6 C 1.39389 * 119.22428 * 0.02562 * 5 4 3 7 7 C 1.48424 * 119.55957 * 180.02562 * 6 5 4 8 8 N 1.30746 * 126.40814 * 359.96994 * 7 6 5 9 9 O 1.21289 * 110.09909 * 180.02562 * 8 7 6 10 10 C 1.33674 * 110.02397 * 0.02562 * 9 8 7 11 11 C 1.50700 * 126.44251 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47551 * 195.02334 * 11 10 9 13 13 N 1.46900 * 109.47395 * 315.02796 * 11 10 9 14 14 C 1.50702 * 109.46869 * 75.02388 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 N 1.30961 * 107.12256 * 0.24116 * 10 9 8 23 23 N 1.32699 * 120.88830 * 0.26784 * 6 5 4 24 24 C 1.31498 * 121.78465 * 359.44002 * 23 6 5 25 25 H 1.07995 * 120.82010 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.38876 * 179.97438 * 5 4 3 27 27 H 1.00907 * 110.99792 * 296.04461 * 13 11 10 28 28 H 1.00903 * 111.00086 * 59.99217 * 13 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 30 30 H 1.07995 * 119.65875 * 180.28489 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2786 0.1856 -1.1937 5 6 4.6591 0.1779 -1.1436 6 6 5.2946 -0.0125 0.0823 7 6 6.7775 -0.0215 0.1448 8 7 7.5976 0.1348 -0.8614 9 8 8.7461 0.0751 -0.4762 10 6 8.7759 -0.1305 0.8443 11 6 10.0079 -0.2643 1.7018 12 1 9.7333 -0.6845 2.6693 13 7 10.9723 -1.1518 1.0384 14 6 10.6302 1.0935 1.9023 15 1 10.1786 1.9661 1.4539 16 6 11.7728 1.2226 2.6633 17 7 12.3225 0.1601 3.2095 18 14 12.5398 2.9066 2.9180 19 1 11.7351 3.9303 2.2041 20 1 12.5682 3.2233 4.3687 21 1 13.9257 2.9053 2.3845 22 7 7.5333 -0.1996 1.2519 23 7 4.5916 -0.1906 1.1936 24 6 3.2767 -0.1846 1.1899 25 1 2.7598 0.3297 -2.1298 26 1 5.2393 0.3170 -2.0439 27 1 10.6025 -2.0865 0.9505 28 1 11.2428 -0.7839 0.1386 29 1 13.1265 0.2509 3.7446 30 1 2.7390 -0.3284 2.1153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225608.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = 119.248039 kcal Electronic energy + Delta-G solvation = -18781.965823 eV Core-core repulsion = 15580.205308 eV Total energy + Delta-G solvation = -3201.760515 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.50593 -41.50968 -37.91387 -37.18551 -36.58222 -34.13572 -33.93757 -33.16900 -31.78577 -28.41399 -27.03694 -25.77185 -24.78983 -24.04439 -22.27817 -20.28368 -19.36195 -18.94918 -18.28678 -17.88592 -17.30697 -16.68037 -16.36938 -15.74595 -15.61786 -15.44627 -14.81151 -14.60951 -14.50462 -14.37514 -14.16754 -13.95011 -13.35908 -13.17803 -12.97799 -12.74970 -12.71719 -12.15317 -12.02154 -11.69815 -11.17550 -10.99943 -10.81017 -10.60864 -10.11489 -9.36041 -8.08257 -6.31943 -1.02387 0.04804 0.21255 1.15206 1.45075 1.48168 1.51402 1.60853 1.86259 1.91498 2.12276 2.46121 2.60195 2.71130 2.81329 3.19861 3.52542 3.57328 3.74662 3.94768 4.04937 4.22026 4.52219 4.58664 4.73417 4.83468 4.87549 5.14065 5.25208 5.65515 5.86714 6.25355 6.41885 6.60855 6.84788 7.00413 7.12112 7.41310 8.96515 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035565 B = 0.003623 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.094773 B = 7726.065996 C = 7950.991769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.288 3.712 3 C -0.062 4.062 4 C 0.001 3.999 5 C -0.129 4.129 6 C 0.209 3.791 7 C 0.191 3.809 8 N -0.380 5.380 9 O 0.071 5.929 10 C 0.197 3.803 11 C 0.318 3.682 12 H 0.063 0.937 13 N -0.803 5.803 14 C -0.558 4.558 15 H 0.049 0.951 16 C 0.049 3.951 17 N -0.868 5.868 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.275 1.275 22 N -0.496 5.496 23 N -0.480 5.480 24 C 0.164 3.836 25 H 0.195 0.805 26 H 0.167 0.833 27 H 0.323 0.677 28 H 0.338 0.662 29 H 0.264 0.736 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -0.880 -9.065 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.028 4.028 3 C -0.069 4.069 4 C -0.026 4.026 5 C -0.150 4.150 6 C 0.072 3.928 7 C -0.080 4.080 8 N -0.091 5.091 9 O 0.014 5.986 10 C -0.025 4.025 11 C 0.204 3.796 12 H 0.081 0.919 13 N -0.330 5.330 14 C -0.598 4.598 15 H 0.068 0.932 16 C -0.157 4.157 17 N -0.501 5.501 18 Si 0.782 3.218 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.200 1.200 22 N -0.229 5.229 23 N -0.189 5.189 24 C 0.001 3.999 25 H 0.212 0.788 26 H 0.185 0.815 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.073 0.927 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.511 -0.896 -8.058 17.502 hybrid contribution 0.121 0.753 -0.935 1.206 sum -15.390 -0.144 -8.993 17.825 Atomic orbital electron populations 1.81343 1.12759 1.09442 1.07956 1.25104 0.91733 0.92876 0.93127 1.17108 0.85200 1.07960 0.96621 1.21959 0.92023 0.89914 0.98749 1.22105 0.95666 0.99573 0.97706 1.18223 0.86225 0.97220 0.91105 1.24021 0.96667 1.02230 0.85043 1.74704 0.89787 1.21628 1.22971 1.85218 1.22812 1.64816 1.25793 1.31836 0.98339 0.90133 0.82235 1.17957 0.77714 0.94833 0.89057 0.91911 1.58957 1.42647 1.03764 1.27669 1.20866 1.12305 0.91011 1.35569 0.93238 1.25532 0.96468 0.99780 0.93936 1.70172 1.19682 1.29695 1.30599 0.85551 0.78401 0.79967 0.77869 1.19820 1.20458 1.20045 1.72192 1.00856 1.21961 1.27874 1.67558 1.08988 1.12680 1.29671 1.23384 0.87546 0.90635 0.98345 0.78825 0.81543 0.86441 0.84876 0.92685 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.91 18.54 19.00 0.35 -8.56 16 2 C 0.29 4.38 15.37 88.33 1.36 5.73 16 3 C -0.06 -0.85 5.75 -21.21 -0.12 -0.97 16 4 C 0.00 0.01 9.89 22.71 0.22 0.24 16 5 C -0.13 -2.32 9.71 22.53 0.22 -2.10 16 6 C 0.21 5.82 6.76 42.01 0.28 6.10 16 7 C 0.19 6.97 7.90 137.30 1.08 8.05 16 8 N -0.38 -13.66 11.82 -59.18 -0.70 -14.36 16 9 O 0.07 2.79 11.27 74.56 0.84 3.63 16 10 C 0.20 8.43 7.22 88.36 0.64 9.07 16 11 C 0.32 14.95 3.15 43.42 0.14 15.09 16 12 H 0.06 3.27 8.14 -2.39 -0.02 3.26 16 13 N -0.80 -34.02 8.54 -174.96 -1.49 -35.51 16 14 C -0.56 -28.96 8.71 25.60 0.22 -28.74 16 15 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 16 C 0.05 2.55 5.39 84.66 0.46 3.01 16 17 N -0.87 -46.81 12.78 21.45 0.27 -46.53 16 18 Si 0.96 41.25 29.54 68.60 2.03 43.27 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 N -0.50 -21.13 11.56 -302.57 -3.50 -24.62 16 23 N -0.48 -13.02 10.27 -183.72 -1.89 -14.90 16 24 C 0.16 2.87 10.91 85.10 0.93 3.80 16 25 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 26 H 0.17 2.61 7.85 -2.91 -0.02 2.59 16 27 H 0.32 11.93 9.06 -89.69 -0.81 11.11 16 28 H 0.34 13.43 8.96 -89.69 -0.80 12.63 16 29 H 0.26 13.50 8.31 -92.70 -0.77 12.73 16 30 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -64.43 292.57 0.97 -63.46 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.38 Total: 14.86 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 5.43 Total: 19.27 kcal Atomic # 7 Polarization: -137.54 SS G_CDS: -6.95 Total: -144.49 kcal Atomic # 8 Polarization: 2.79 SS G_CDS: 0.84 Total: 3.63 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -64.43 0.97 -63.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225608.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.707 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds