Wall clock time and date at job start Mon Mar 30 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99950 * 2 1 4 4 H 1.07999 * 119.99895 * 202.14148 * 3 2 1 5 5 C 1.38813 * 120.00050 * 22.14447 * 3 2 1 6 6 N 1.31610 * 120.00203 * 11.27820 * 5 3 2 7 7 Si 1.86803 * 119.99518 * 191.27924 * 5 3 2 8 8 H 1.48496 * 109.47481 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46871 * 120.00286 * 7 5 3 10 10 H 1.48503 * 109.46748 * 239.99523 * 7 5 3 11 11 C 1.46494 * 119.99936 * 179.97438 * 2 1 3 12 12 C 1.50704 * 109.47503 * 270.00637 * 11 2 1 13 13 C 1.38337 * 119.90343 * 260.00380 * 12 11 2 14 14 C 1.38283 * 120.40131 * 180.02562 * 13 12 11 15 15 C 1.38230 * 120.19412 * 359.97138 * 14 13 12 16 16 F 1.35099 * 120.10388 * 179.97438 * 15 14 13 17 17 C 1.39942 * 119.80052 * 0.02562 * 15 14 13 18 18 C 1.47411 * 120.19818 * 180.02562 * 17 15 14 19 19 O 1.21504 * 120.00160 * 89.99306 * 18 17 15 20 20 O 1.34750 * 119.99797 * 269.72768 * 18 17 15 21 21 C 1.38190 * 119.90230 * 80.27580 * 12 11 2 22 22 F 1.35097 * 120.10068 * 0.02562 * 21 12 11 23 23 H 1.08998 * 109.47418 * 274.50964 * 1 2 3 24 24 H 1.09002 * 109.46911 * 34.50534 * 1 2 3 25 25 H 1.08996 * 109.47118 * 154.49872 * 1 2 3 26 26 H 0.97001 * 120.00263 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47411 * 150.00792 * 11 2 1 28 28 H 1.08998 * 109.47517 * 30.00427 * 11 2 1 29 29 H 1.08007 * 119.79653 * 0.02562 * 13 12 11 30 30 H 1.07997 * 119.90127 * 180.02562 * 14 13 12 31 31 H 0.96697 * 116.99707 * 180.27475 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1700 1.2204 -0.3525 5 6 1.5324 2.3437 0.4531 6 7 0.3803 2.2712 1.0851 7 14 2.3372 4.0049 0.1659 8 1 3.6178 3.8154 -0.5617 9 1 1.4309 4.8610 -0.6409 10 1 2.6028 4.6587 1.4725 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7033 1.4216 13 6 3.6844 -1.4816 2.0024 14 6 3.9261 -1.8766 3.3054 15 6 2.9326 -2.4968 4.0395 16 9 3.1710 -2.8825 5.3122 17 6 1.6794 -2.7251 3.4602 18 6 0.6133 -3.3853 4.2353 19 8 -0.1561 -2.7196 4.8995 20 8 0.4888 -4.7266 4.2029 21 6 1.4454 -2.3270 2.1387 22 9 0.2412 -2.5479 1.5676 23 1 -0.3634 0.0808 1.0244 24 1 -0.3633 0.8469 -0.5822 25 1 -0.3633 -0.9275 -0.4424 26 1 -0.0513 3.0803 1.4014 27 1 3.1500 -1.1386 -0.5132 28 1 1.6085 -2.0286 -0.5130 29 1 4.4651 -0.9971 1.4347 30 1 4.8938 -1.6992 3.7510 31 1 -0.2277 -5.1137 4.7241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249774470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:27 Heat of formation + Delta-G solvation = -147.332216 kcal Electronic energy + Delta-G solvation = -21000.016635 eV Core-core repulsion = 17303.714395 eV Total energy + Delta-G solvation = -3696.302240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.23006 -50.17224 -41.46166 -39.82235 -37.39726 -37.27800 -33.86601 -32.49965 -31.57528 -28.05178 -27.36147 -26.12446 -23.97230 -23.09723 -21.94672 -19.59432 -19.27925 -18.90573 -18.45062 -18.29251 -17.19840 -16.94483 -16.67453 -16.49908 -16.30814 -15.83486 -15.50034 -15.37860 -15.11575 -14.70891 -14.34301 -13.81147 -13.21042 -13.12902 -12.99544 -12.88405 -12.77592 -12.75120 -12.49667 -12.16050 -11.97662 -11.93619 -11.82531 -10.66780 -10.20406 -9.72062 -8.86986 -7.82469 -5.31501 -0.35478 -0.08195 0.68118 1.49480 1.51220 1.61175 1.72560 2.20312 2.53467 2.62224 3.28754 3.34280 3.63715 3.69440 3.79312 3.93984 4.06859 4.41388 4.57748 4.75344 4.82520 4.88127 4.96018 5.00589 5.20980 5.29423 5.32794 5.61889 5.67051 5.71307 6.30070 6.65463 7.11580 7.81849 8.27506 9.21357 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.006258 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.336413 B = 4473.141870 C = 4780.161470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.605 5.605 3 C -0.255 4.255 4 H 0.092 0.908 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.254 1.254 9 H -0.298 1.298 10 H -0.298 1.298 11 C 0.179 3.821 12 C -0.135 4.135 13 C -0.024 4.024 14 C -0.143 4.143 15 C 0.139 3.861 16 F -0.130 7.130 17 C -0.208 4.208 18 C 0.545 3.455 19 O -0.529 6.529 20 O -0.491 6.491 21 C 0.152 3.848 22 F -0.134 7.134 23 H -0.007 1.007 24 H 0.021 0.979 25 H 0.025 0.975 26 H 0.245 0.755 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.178 0.822 30 H 0.187 0.813 31 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.916 -12.816 2.354 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.385 4.385 4 H 0.109 0.891 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.178 1.178 9 H -0.225 1.225 10 H -0.226 1.226 11 C 0.053 3.947 12 C -0.140 4.140 13 C -0.043 4.043 14 C -0.162 4.162 15 C 0.118 3.882 16 F -0.108 7.108 17 C -0.211 4.211 18 C 0.388 3.612 19 O -0.418 6.418 20 O -0.305 6.305 21 C 0.131 3.869 22 F -0.113 7.113 23 H 0.011 0.989 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.195 0.805 30 H 0.204 0.796 31 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 7.852 -12.368 2.335 14.835 hybrid contribution -1.235 0.753 0.898 1.702 sum 6.617 -11.615 3.233 13.753 Atomic orbital electron populations 1.20518 0.83045 0.95788 0.97071 1.44365 1.01916 1.01643 1.84612 1.19738 0.98697 0.85514 1.34571 0.89056 1.25904 0.98279 1.02257 0.98689 1.70292 1.19314 1.27324 1.41850 0.85159 0.78454 0.79823 0.76746 1.17757 1.22509 1.22595 1.20180 0.98462 0.87237 0.88856 1.21436 0.93130 0.97024 1.02389 1.21360 0.95827 0.93258 0.93819 1.21482 1.00238 0.99800 0.94643 1.17300 0.91859 0.99188 0.79807 1.91517 1.94535 1.88971 1.35799 1.19041 0.95322 1.11503 0.95199 1.20495 0.81968 0.81318 0.77451 1.90927 1.43351 1.66630 1.40930 1.84627 1.56753 1.20327 1.68752 1.17309 0.81736 0.98782 0.89072 1.91484 1.42913 1.92446 1.84423 0.98854 0.96016 0.95641 0.94556 0.88714 0.91595 0.80474 0.79599 0.70191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 8.18 127.77 1.05 10.19 16 2 N -0.60 -28.65 2.91 -731.32 -2.13 -30.78 16 3 C -0.26 -12.90 9.68 84.03 0.81 -12.09 16 4 H 0.09 4.20 7.84 -2.91 -0.02 4.18 16 5 C -0.06 -3.05 5.13 84.86 0.44 -2.62 16 6 N -0.94 -56.01 10.57 21.65 0.23 -55.79 16 7 Si 0.97 43.44 29.57 68.60 2.03 45.47 16 8 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 9 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 11 C 0.18 6.41 5.55 85.64 0.48 6.89 16 12 C -0.14 -4.63 5.46 -19.85 -0.11 -4.74 16 13 C -0.02 -0.64 9.65 22.30 0.22 -0.43 16 14 C -0.14 -3.52 10.01 22.28 0.22 -3.29 16 15 C 0.14 4.20 7.29 22.68 0.17 4.37 16 16 F -0.13 -3.82 16.83 44.97 0.76 -3.06 16 17 C -0.21 -7.32 5.76 -20.03 -0.12 -7.44 16 18 C 0.55 18.86 7.06 70.24 0.50 19.36 16 19 O -0.53 -21.80 17.89 19.82 0.35 -21.44 16 20 O -0.49 -12.22 13.44 -56.61 -0.76 -12.98 16 21 C 0.15 5.68 7.23 22.68 0.16 5.84 16 22 F -0.13 -5.41 15.33 44.97 0.69 -4.72 16 23 H -0.01 -0.40 7.41 -2.39 -0.02 -0.42 16 24 H 0.02 1.17 7.19 -2.39 -0.02 1.15 16 25 H 0.03 1.12 7.79 -2.39 -0.02 1.10 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.09 2.86 7.89 -2.39 -0.02 2.84 16 28 H 0.07 2.21 7.65 -2.39 -0.02 2.20 16 29 H 0.18 3.66 8.03 -2.91 -0.02 3.64 16 30 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.44 6.03 9.11 -74.06 -0.67 5.36 16 Total: -1.00 -71.63 288.14 5.49 -66.13 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 0.52 Total: 1.12 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 3.81 Total: 16.04 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -1.90 Total: -86.56 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.41 Total: -34.42 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 1.45 Total: -7.78 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.63 5.49 -66.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249774470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.198 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds