Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35691 * 117.00338 * 2 1 4 4 C 1.38771 * 119.64023 * 180.02562 * 3 2 1 5 5 C 1.38560 * 119.24472 * 179.69932 * 4 3 2 6 6 C 1.50707 * 120.73082 * 180.25657 * 5 4 3 7 7 C 1.52997 * 109.47116 * 100.00209 * 6 5 4 8 8 C 1.50699 * 109.47088 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00033 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00324 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99762 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00207 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47028 * 90.00226 * 12 10 8 14 14 H 1.48503 * 109.47167 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.47474 * 330.00211 * 12 10 8 16 16 C 1.38647 * 118.53820 * 0.27854 * 5 4 3 17 17 Cl 1.73599 * 120.39302 * 179.97438 * 16 5 4 18 18 C 1.38850 * 119.21498 * 359.97438 * 16 5 4 19 19 O 1.35695 * 119.65264 * 179.97438 * 18 16 5 20 20 C 1.42904 * 116.99891 * 180.02562 * 19 18 16 21 21 N 1.32322 * 119.63717 * 0.27124 * 3 2 1 22 22 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46752 * 300.00060 * 1 2 3 24 24 H 1.08996 * 109.47247 * 59.99578 * 1 2 3 25 25 H 1.08002 * 120.37951 * 359.97438 * 4 3 2 26 26 H 1.08993 * 109.46743 * 220.00240 * 6 5 4 27 27 H 1.08999 * 109.46953 * 339.99573 * 6 5 4 28 28 H 1.09000 * 109.47019 * 299.99925 * 7 6 5 29 29 H 1.08996 * 109.47269 * 60.00041 * 7 6 5 30 30 H 0.97004 * 119.99610 * 179.97438 * 11 10 8 31 31 H 1.08993 * 109.47148 * 180.02562 * 20 19 18 32 32 H 1.08999 * 109.46849 * 300.00265 * 20 19 18 33 33 H 1.08995 * 109.47081 * 60.00002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4313 1.2728 -0.0005 5 6 4.0519 2.5117 -0.0069 6 6 5.5551 2.6200 -0.0135 7 6 6.0398 2.9022 -1.4369 8 6 7.5429 3.0099 -1.4436 9 1 8.0971 2.8895 -0.5244 10 6 8.2108 3.2621 -2.6231 11 7 7.5361 3.4082 -3.7425 12 14 10.0739 3.3963 -2.6312 13 1 10.6657 2.0557 -2.8721 14 1 10.4986 4.3257 -3.7087 15 1 10.5387 3.9141 -1.3193 16 6 3.2596 3.6494 -0.0066 17 17 3.9864 5.2259 -0.0137 18 6 1.8778 3.5130 -0.0005 19 8 1.0938 4.6206 0.0004 20 6 -0.3202 4.4145 0.0073 21 7 1.3175 2.3142 0.0054 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 4.0198 0.3672 -0.0005 26 1 5.8635 3.4332 0.6434 27 1 5.9883 1.6840 0.3391 28 1 5.7313 2.0889 -2.0937 29 1 5.6066 3.8382 -1.7894 30 1 8.0060 3.5860 -4.5723 31 1 -0.8280 5.3790 0.0068 32 1 -0.6097 3.8515 -0.8800 33 1 -0.6016 3.8558 0.8999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061822.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -56.205147 kcal Electronic energy + Delta-G solvation = -18414.382066 eV Core-core repulsion = 15273.828072 eV Total energy + Delta-G solvation = -3140.553994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84072 -38.86814 -37.45183 -35.91946 -34.34306 -32.49714 -30.24280 -29.78843 -27.81966 -26.54157 -25.32667 -23.17970 -22.27591 -20.53400 -18.14682 -17.92622 -16.42293 -16.33580 -16.21212 -16.01341 -15.54826 -14.91822 -14.46965 -14.02924 -13.46068 -12.93652 -12.86616 -12.44955 -12.29268 -12.00357 -11.88661 -11.69565 -11.44876 -11.14801 -10.91849 -10.69050 -10.65906 -10.44238 -9.92614 -9.88045 -9.67106 -9.10821 -8.87067 -8.33068 -7.90059 -5.98300 -4.01152 1.24313 1.38419 2.55231 2.97247 3.14882 3.33864 3.40292 3.43479 3.77684 4.26605 4.47608 5.01759 5.12081 5.16817 5.18903 5.23214 5.28565 5.35917 5.37987 5.49216 5.53593 5.77424 6.03409 6.34828 6.52714 6.60661 6.84185 6.94066 7.35577 7.66944 7.72885 7.79461 8.00241 8.39119 9.04691 9.62521 11.12886 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.005186 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.077139 B = 5397.800898 C = 6201.833947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.302 6.302 3 C 0.356 3.644 4 C -0.216 4.216 5 C 0.056 3.944 6 C -0.083 4.083 7 C 0.030 3.970 8 C -0.520 4.520 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.142 4.142 17 Cl -0.035 7.035 18 C 0.365 3.635 19 O -0.294 6.294 20 C 0.041 3.959 21 N -0.594 5.594 22 H 0.095 0.905 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.017 0.983 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.634 -2.296 8.510 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.179 3.821 4 C -0.237 4.237 5 C 0.049 3.951 6 C -0.120 4.120 7 C -0.007 4.007 8 C -0.558 4.558 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.172 4.172 17 Cl -0.007 7.007 18 C 0.187 3.813 19 O -0.200 6.200 20 C -0.054 4.054 21 N -0.334 5.334 22 H 0.113 0.887 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.168 0.832 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.297 -2.168 8.326 18.429 hybrid contribution 1.274 0.193 -0.212 1.306 sum -15.024 -1.975 8.114 17.189 Atomic orbital electron populations 1.22829 0.77588 1.02802 1.02242 1.86278 1.22625 1.24259 1.87767 1.19357 0.89029 0.83155 0.90543 1.20828 0.91074 0.99105 1.12701 1.20382 0.98646 0.89188 0.86892 1.21028 0.85090 1.02663 1.03253 1.19093 0.95978 0.97857 0.87758 1.21160 0.91575 1.48953 0.94102 0.92476 1.24992 0.98297 0.95336 0.95639 1.69975 1.35422 1.48972 0.98829 0.86598 0.85802 0.77886 0.77741 1.20683 1.21266 1.19819 1.20494 0.89491 0.89502 1.17756 1.98362 1.82475 1.22764 1.97078 1.18891 0.87117 0.84199 0.91093 1.86350 1.19257 1.26983 1.87456 1.22839 0.77691 1.02707 1.02175 1.66820 1.40640 0.97917 1.28034 0.88693 0.92514 0.92407 0.83175 0.90443 0.90977 0.96427 0.95262 0.92979 0.88586 0.92400 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.30 -4.23 10.47 -18.77 -0.20 -4.42 16 3 C 0.36 5.69 7.48 -17.14 -0.13 5.56 16 4 C -0.22 -3.63 9.70 -39.27 -0.38 -4.01 16 5 C 0.06 1.05 5.17 -104.35 -0.54 0.51 16 6 C -0.08 -1.69 4.79 -27.88 -0.13 -1.82 16 7 C 0.03 0.77 4.93 -27.89 -0.14 0.63 16 8 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 9 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 12 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.14 -2.63 6.35 -39.20 -0.25 -2.88 16 17 Cl -0.04 -0.66 26.45 -51.86 -1.37 -2.03 16 18 C 0.37 6.18 7.48 -17.11 -0.13 6.05 16 19 O -0.29 -4.47 9.94 -18.79 -0.19 -4.65 16 20 C 0.04 0.44 10.38 101.05 1.05 1.49 16 21 N -0.59 -9.41 8.06 -13.38 -0.11 -9.52 16 22 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 24 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 25 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.08 1.55 7.45 -51.93 -0.39 1.16 16 27 H 0.07 1.36 8.04 -51.93 -0.42 0.95 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.79 7.37 -51.93 -0.38 0.41 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -31.09 304.12 -5.68 -36.77 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -4.10 Total: -5.00 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.01 Total: -6.18 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.63 Total: -35.57 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.38 Total: -9.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.37 Total: -2.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.09 -5.68 -36.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061822.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.439 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds