Wall clock time and date at job start Mon Mar 30 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1 5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2 6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3 7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5 9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00064 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99623 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00553 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99470 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00245 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99881 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47054 * 90.00848 * 16 14 12 18 18 H 1.48508 * 109.47219 * 210.00174 * 16 14 12 19 19 H 1.48497 * 109.47431 * 330.00291 * 16 14 12 20 20 N 1.36542 * 107.03065 * 359.97438 * 6 5 4 21 21 N 1.36599 * 127.14525 * 180.02562 * 20 6 5 22 22 H 1.09002 * 109.46655 * 300.00203 * 1 2 3 23 23 H 1.08997 * 109.47152 * 59.99231 * 1 2 3 24 24 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46851 * 240.00311 * 2 1 3 26 26 H 1.08998 * 109.47354 * 120.00015 * 2 1 3 27 27 H 1.09000 * 109.46608 * 299.99574 * 8 7 6 28 28 H 1.08995 * 109.46795 * 60.00035 * 8 7 6 29 29 H 0.97001 * 119.99781 * 359.97438 * 11 9 8 30 30 H 0.97004 * 120.00511 * 179.97438 * 15 14 12 31 31 H 1.00900 * 111.00328 * 89.97471 * 21 20 6 32 32 H 1.00903 * 110.99821 * 213.93114 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1486 1.0496 5 7 2.7019 3.3118 0.6896 6 6 2.7286 3.3897 -0.6206 7 16 3.2224 4.7844 -1.5773 8 6 3.6343 5.9454 -0.2512 9 6 4.0954 7.2491 -0.8501 10 8 4.1415 7.3802 -2.0550 11 7 4.4575 8.2690 -0.0468 12 6 4.8774 9.4548 -0.5918 13 1 4.9177 9.5719 -1.6646 14 6 5.2502 10.5064 0.2364 15 7 5.2007 10.3642 1.5418 16 14 5.8218 12.1225 -0.5060 17 1 4.6534 13.0180 -0.7017 18 1 6.7947 12.7712 0.4095 19 1 6.4716 11.8632 -1.8158 20 7 2.3023 2.1850 -1.1016 21 7 2.1724 1.8190 -2.4112 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.7524 6.1208 0.3649 28 1 4.4302 5.5263 0.3644 29 1 4.4209 8.1639 0.9168 30 1 5.4613 11.0982 2.1200 31 1 3.0262 1.4083 -2.7583 32 1 1.3925 1.1911 -2.5355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253172950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:19 Heat of formation + Delta-G solvation = 57.715059 kcal Electronic energy + Delta-G solvation = -17697.818443 eV Core-core repulsion = 14628.833609 eV Total energy + Delta-G solvation = -3068.984834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.01525 -38.18618 -36.67300 -34.41440 -34.05829 -31.41829 -30.18915 -29.71758 -29.00697 -24.82654 -24.44180 -22.80608 -21.37211 -19.68224 -18.55078 -17.93869 -17.56213 -16.83013 -15.93949 -15.59884 -14.98974 -14.61775 -14.53066 -14.47073 -14.07053 -13.33189 -13.05687 -12.52766 -12.28256 -12.06113 -12.02957 -11.74901 -11.54785 -11.31675 -11.09395 -10.76046 -10.42306 -10.28577 -10.12430 -9.93607 -9.68862 -9.59872 -8.63935 -8.07335 -7.36567 -6.48056 -3.89976 1.20168 1.50484 2.11135 2.41555 2.69429 3.14728 3.25008 3.30861 3.74585 3.75249 4.13049 4.20925 4.58307 4.71971 4.83372 4.96837 5.16269 5.17381 5.32405 5.38049 5.60789 5.67540 5.68258 5.82449 5.85700 6.15535 6.17753 7.21783 7.49613 7.94406 8.47527 8.54250 9.07353 9.41459 9.89988 10.68887 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.051829 B = 0.003457 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.107382 B = 8098.020747 C = 8523.899391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.033 4.033 3 C 0.138 3.862 4 N -0.269 5.269 5 N -0.296 5.296 6 C 0.176 3.824 7 S 0.106 5.894 8 C -0.136 4.136 9 C 0.452 3.548 10 O -0.585 6.585 11 N -0.546 5.546 12 C -0.304 4.304 13 H 0.107 0.893 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 N -0.311 5.311 21 N -0.583 5.583 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.396 0.604 30 H 0.274 0.726 31 H 0.365 0.635 32 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -20.198 -3.804 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.073 4.073 3 C -0.133 4.133 4 N -0.110 5.110 5 N -0.141 5.141 6 C -0.197 4.197 7 S 0.334 5.666 8 C -0.289 4.289 9 C 0.236 3.764 10 O -0.472 6.472 11 N -0.181 5.181 12 C -0.433 4.433 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 N -0.095 5.095 21 N -0.214 5.214 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.183 0.817 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.766 -18.627 -4.305 20.280 hybrid contribution 0.194 -0.881 0.621 1.095 sum -6.572 -19.508 -3.684 20.912 Atomic orbital electron populations 1.21791 0.93307 1.02666 1.03068 1.19960 0.96829 0.86074 1.04436 1.25450 1.06617 0.97901 0.83332 1.73919 1.14584 0.99075 1.23414 1.74881 1.20662 1.12549 1.06004 1.27591 1.04181 0.92658 0.95301 1.86450 1.79004 0.97499 1.03669 1.23728 1.06583 0.97615 1.00977 1.18887 0.85763 0.84392 0.87388 1.90556 1.60088 1.82494 1.14013 1.41750 1.56223 1.11184 1.08951 1.19754 1.40701 0.88448 0.94414 0.87570 1.25328 0.97215 1.00008 0.95159 1.69620 1.47413 1.33804 1.02643 0.85808 0.78527 0.80836 0.78837 1.20248 1.20814 1.19264 1.44987 1.51965 1.10554 1.01990 1.59564 1.11576 1.52704 0.97543 0.91354 0.92677 0.91095 0.90646 0.87833 0.87199 0.87253 0.76970 0.91592 0.81658 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 37.16 0.37 -0.55 16 2 C -0.03 -0.23 6.24 -27.88 -0.17 -0.41 16 3 C 0.14 1.70 7.38 -153.99 -1.14 0.56 16 4 N -0.27 -4.40 12.18 33.00 0.40 -4.00 16 5 N -0.30 -5.32 11.60 30.68 0.36 -4.96 16 6 C 0.18 2.88 8.20 -88.34 -0.72 2.15 16 7 S 0.11 1.86 21.40 -107.50 -2.30 -0.44 16 8 C -0.14 -2.61 5.72 36.00 0.21 -2.40 16 9 C 0.45 10.79 7.80 -10.99 -0.09 10.70 16 10 O -0.59 -15.73 15.44 5.55 0.09 -15.64 16 11 N -0.55 -13.92 5.29 -10.97 -0.06 -13.97 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 13 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -24.24 13.05 55.50 0.72 -23.52 16 16 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 N -0.31 -3.92 3.81 -9.93 -0.04 -3.96 16 21 N -0.58 -4.95 10.41 60.35 0.63 -4.32 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.11 1.99 8.14 -51.92 -0.42 1.56 16 28 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 29 H 0.40 9.71 7.90 -40.82 -0.32 9.39 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.37 2.29 9.21 -181.37 -1.67 0.62 16 32 H 0.37 1.96 8.85 -181.36 -1.60 0.36 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -34.01 302.86 -8.51 -42.52 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.07 Total: 5.83 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.79 Total: 2.10 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 2.01 Total: -54.73 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.30 Total: -0.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.01 -8.51 -42.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253172950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.236 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds