Wall clock time and date at job start Mon Mar 30 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1 5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2 6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3 7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5 9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00064 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99623 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00553 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99470 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00245 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99881 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47054 * 90.00848 * 16 14 12 18 18 H 1.48508 * 109.47219 * 210.00174 * 16 14 12 19 19 H 1.48497 * 109.47431 * 330.00291 * 16 14 12 20 20 N 1.36542 * 107.03065 * 359.97438 * 6 5 4 21 21 N 1.36599 * 127.14525 * 180.02562 * 20 6 5 22 22 H 1.09002 * 109.46655 * 300.00203 * 1 2 3 23 23 H 1.08997 * 109.47152 * 59.99231 * 1 2 3 24 24 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46851 * 240.00311 * 2 1 3 26 26 H 1.08998 * 109.47354 * 120.00015 * 2 1 3 27 27 H 1.09000 * 109.46608 * 299.99574 * 8 7 6 28 28 H 1.08995 * 109.46795 * 60.00035 * 8 7 6 29 29 H 0.97001 * 119.99781 * 359.97438 * 11 9 8 30 30 H 0.97004 * 120.00511 * 179.97438 * 15 14 12 31 31 H 1.00900 * 111.00328 * 89.97471 * 21 20 6 32 32 H 1.00903 * 110.99821 * 213.93114 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1486 1.0496 5 7 2.7019 3.3118 0.6896 6 6 2.7286 3.3897 -0.6206 7 16 3.2224 4.7844 -1.5773 8 6 3.6343 5.9454 -0.2512 9 6 4.0954 7.2491 -0.8501 10 8 4.1415 7.3802 -2.0550 11 7 4.4575 8.2690 -0.0468 12 6 4.8774 9.4548 -0.5918 13 1 4.9177 9.5719 -1.6646 14 6 5.2502 10.5064 0.2364 15 7 5.2007 10.3642 1.5418 16 14 5.8218 12.1225 -0.5060 17 1 4.6534 13.0180 -0.7017 18 1 6.7947 12.7712 0.4095 19 1 6.4716 11.8632 -1.8158 20 7 2.3023 2.1850 -1.1016 21 7 2.1724 1.8190 -2.4112 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.7524 6.1208 0.3649 28 1 4.4302 5.5263 0.3644 29 1 4.4209 8.1639 0.9168 30 1 5.4613 11.0982 2.1200 31 1 3.0262 1.4083 -2.7583 32 1 1.3925 1.1911 -2.5355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253172950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:18 Heat of formation + Delta-G solvation = 33.151509 kcal Electronic energy + Delta-G solvation = -17698.883598 eV Core-core repulsion = 14628.833609 eV Total energy + Delta-G solvation = -3070.049990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.10282 -40.15957 -37.61376 -36.09653 -35.09651 -33.43995 -31.39412 -30.86168 -30.30282 -26.71243 -25.29020 -23.95948 -22.25933 -21.49352 -20.12939 -19.46454 -18.44255 -18.09083 -17.75107 -16.53892 -16.50672 -16.26694 -16.04945 -15.65552 -15.17795 -14.76697 -14.37650 -13.90996 -13.60657 -13.50290 -13.13999 -12.90990 -12.88303 -12.46057 -12.36962 -12.16624 -12.10833 -11.89483 -11.57638 -11.39774 -11.07111 -10.63346 -10.57004 -10.11372 -8.69765 -8.51303 -6.01915 -0.08838 0.44668 0.98553 1.15004 1.36446 1.43372 1.55555 1.56710 1.87594 2.28382 3.00974 3.04241 3.14655 3.49731 4.01049 4.08644 4.08835 4.17139 4.19475 4.38582 4.43355 4.51314 4.83587 4.90649 5.01264 5.27323 5.37954 5.67296 5.89045 6.37691 6.45629 7.01991 7.40486 7.41348 7.92109 8.65765 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.051829 B = 0.003457 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.107382 B = 8098.020747 C = 8523.899391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.162 3.838 4 N -0.316 5.316 5 N -0.326 5.326 6 C 0.159 3.841 7 S 0.104 5.896 8 C -0.126 4.126 9 C 0.454 3.546 10 O -0.617 6.617 11 N -0.555 5.555 12 C -0.337 4.337 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.269 1.269 20 N -0.305 5.305 21 N -0.583 5.583 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.399 0.601 30 H 0.280 0.720 31 H 0.381 0.619 32 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 -21.850 -4.474 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.110 4.110 4 N -0.156 5.156 5 N -0.171 5.171 6 C -0.216 4.216 7 S 0.331 5.669 8 C -0.279 4.279 9 C 0.239 3.761 10 O -0.505 6.505 11 N -0.191 5.191 12 C -0.467 4.467 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.194 1.194 20 N -0.087 5.087 21 N -0.220 5.220 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.118 0.882 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.233 0.767 30 H 0.090 0.910 31 H 0.201 0.799 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.271 -20.321 -4.963 22.145 hybrid contribution 0.269 -0.565 0.792 1.009 sum -7.002 -20.885 -4.170 22.419 Atomic orbital electron populations 1.21781 0.92329 1.04269 1.02099 1.20322 0.97432 0.82875 1.06659 1.26451 1.03260 0.99007 0.82244 1.73849 1.17037 0.99300 1.25382 1.74770 1.21387 1.13882 1.07037 1.27240 1.05797 0.93510 0.95096 1.86305 1.79840 0.97851 1.02892 1.23476 1.07164 0.95673 1.01540 1.19550 0.84190 0.85388 0.86930 1.90526 1.60982 1.83454 1.15501 1.41811 1.56791 1.11325 1.09170 1.19772 1.42907 0.90071 0.93925 0.89470 1.26160 0.96561 1.02847 0.95510 1.69687 1.47408 1.34980 1.03540 0.84851 0.78337 0.76621 0.78071 1.19464 1.19528 1.19356 1.44983 1.50698 1.09370 1.03627 1.59610 1.13409 1.53924 0.95044 0.93578 0.92433 0.88202 0.86931 0.87081 0.86296 0.86175 0.76669 0.91003 0.79865 0.78666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 71.98 0.71 -0.63 16 2 C -0.03 -0.36 6.24 29.85 0.19 -0.17 16 3 C 0.16 3.68 7.38 137.63 1.02 4.70 16 4 N -0.32 -10.15 12.18 -49.52 -0.60 -10.76 16 5 N -0.33 -11.72 11.60 -56.86 -0.66 -12.38 16 6 C 0.16 5.11 8.20 179.55 1.47 6.58 16 7 S 0.10 3.63 21.40 -56.49 -1.21 2.42 16 8 C -0.13 -4.89 5.72 71.23 0.41 -4.48 16 9 C 0.45 22.16 7.80 87.66 0.68 22.84 16 10 O -0.62 -33.90 15.44 -3.06 -0.05 -33.95 16 11 N -0.56 -29.04 5.29 -306.99 -1.62 -30.66 16 12 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 13 H 0.09 5.18 7.16 -2.91 -0.02 5.16 16 14 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 15 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 16 Si 1.00 42.51 29.55 68.60 2.03 44.53 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 N -0.31 -7.15 3.81 -185.32 -0.71 -7.85 16 21 N -0.58 -8.35 10.41 37.02 0.39 -7.97 16 22 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.12 4.37 8.14 -2.40 -0.02 4.35 16 28 H 0.12 4.36 8.14 -2.40 -0.02 4.35 16 29 H 0.40 20.06 7.90 -92.71 -0.73 19.32 16 30 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.38 3.65 9.21 -210.56 -1.94 1.71 16 32 H 0.39 2.75 8.85 -210.55 -1.86 0.88 16 Total: -1.00 -74.94 302.86 0.27 -74.68 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -3.34 Total: 20.84 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.76 Total: 10.49 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -2.92 Total: -119.02 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.05 Total: -33.95 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.21 Total: 2.42 kcal Total: -74.94 0.27 -74.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253172950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.827 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds