Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36884 * 126.40072 * 2 1 4 4 Cl 1.73608 * 126.59654 * 359.97438 * 3 2 1 5 5 C 1.34793 * 106.80398 * 180.25419 * 3 2 1 6 6 N 1.34167 * 108.01335 * 359.73995 * 5 3 2 7 7 C 1.30475 * 109.26903 * 0.02562 * 6 5 3 8 8 C 1.50700 * 125.64096 * 179.97438 * 7 6 5 9 9 N 1.46908 * 109.46687 * 90.02616 * 8 7 6 10 10 C 1.47480 * 110.99907 * 74.02784 * 9 8 7 11 11 C 1.53515 * 87.93050 * 138.70117 * 10 9 8 12 12 O 1.42900 * 114.17193 * 87.61999 * 11 10 9 13 13 C 1.50696 * 114.17100 * 220.32968 * 11 10 9 14 14 H 1.08000 * 120.00309 * 93.83942 * 13 11 10 15 15 C 1.37883 * 120.00048 * 273.83883 * 13 11 10 16 16 N 1.31520 * 119.99659 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00362 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46712 * 90.00131 * 17 15 13 19 19 H 1.48497 * 109.47210 * 210.00077 * 17 15 13 20 20 H 1.48500 * 109.47090 * 330.00249 * 17 15 13 21 21 C 1.47486 * 110.99674 * 169.99818 * 9 8 7 22 22 H 1.08993 * 109.47112 * 270.18688 * 1 2 3 23 23 H 1.08999 * 109.46580 * 30.19086 * 1 2 3 24 24 H 1.09002 * 109.46582 * 150.18342 * 1 2 3 25 25 H 1.08000 * 125.99472 * 179.77896 * 5 3 2 26 26 H 1.08993 * 109.47596 * 330.02420 * 8 7 6 27 27 H 1.08997 * 109.46971 * 210.01698 * 8 7 6 28 28 H 1.09004 * 113.47564 * 253.46110 * 10 9 8 29 29 H 1.08993 * 113.47671 * 23.93538 * 10 9 8 30 30 H 0.96700 * 114.00121 * 86.16271 * 12 11 10 31 31 H 0.96998 * 119.99675 * 180.02562 * 16 15 13 32 32 H 1.09000 * 113.47612 * 336.06529 * 21 9 8 33 33 H 1.09003 * 113.47275 * 106.52680 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2774 1.1018 0.0000 4 17 1.7697 2.7620 -0.0006 5 6 3.5472 0.6497 -0.0057 6 7 3.5102 -0.6915 -0.0033 7 6 2.2671 -1.0879 0.0031 8 6 1.8025 -2.5215 0.0071 9 7 1.6576 -2.9853 1.3935 10 6 0.4570 -2.4041 2.0224 11 6 0.1911 -3.7778 2.6542 12 8 0.8431 -3.9805 3.9096 13 6 -1.2603 -4.1831 2.6617 14 1 -1.6566 -4.7867 1.8586 15 6 -2.0824 -3.7832 3.6938 16 7 -1.6000 -3.0476 4.6716 17 14 -3.8817 -4.2849 3.7028 18 1 -4.0311 -5.5790 4.4158 19 1 -4.6827 -3.2433 4.3946 20 1 -4.3617 -4.4315 2.3052 21 6 0.9820 -4.2953 1.4445 22 1 -0.3633 0.0034 1.0276 23 1 -0.3632 0.8883 -0.5168 24 1 -0.3632 -0.8917 -0.5110 25 1 4.4382 1.2600 -0.0107 26 1 2.5348 -3.1422 -0.5091 27 1 0.8416 -2.5934 -0.5023 28 1 0.6823 -1.6268 2.7525 29 1 -0.3056 -2.1013 1.3050 30 1 0.3428 -3.6537 4.6699 31 1 -2.1783 -2.7667 5.3979 32 1 0.3595 -4.4971 0.5728 33 1 1.6524 -5.1205 1.6847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256565998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = 29.602991 kcal Electronic energy + Delta-G solvation = -19028.115372 eV Core-core repulsion = 15923.575049 eV Total energy + Delta-G solvation = -3104.540323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.30331 -40.88460 -37.83853 -36.38254 -35.17721 -34.09812 -32.41494 -29.46456 -28.24055 -27.33587 -26.68636 -24.31817 -22.59615 -21.03117 -20.46240 -19.29416 -18.35572 -17.44179 -17.10013 -16.51714 -16.38333 -15.83434 -15.72223 -15.41798 -14.79790 -14.24588 -14.19353 -13.92321 -13.67683 -13.48324 -13.27206 -12.99756 -12.85590 -12.59646 -12.57177 -12.44346 -12.19810 -11.98248 -11.19774 -11.14101 -10.76410 -10.64557 -10.10283 -9.72810 -9.36395 -8.24631 -6.42768 0.49662 0.71304 1.43799 1.47210 1.55903 1.82675 1.89339 2.37969 2.96422 3.18588 3.30942 3.71032 3.77478 4.05781 4.10946 4.15892 4.24376 4.34555 4.42379 4.46310 4.53538 4.63071 4.91005 4.97878 5.11452 5.35681 5.37275 5.43556 5.75428 5.86260 5.96382 6.24320 6.64681 6.86870 7.31149 7.55655 8.80504 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.005376 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.514438 B = 5207.372067 C = 5838.083491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.448 5.448 3 C 0.005 3.995 4 Cl 0.008 6.992 5 C -0.009 4.009 6 N -0.501 5.501 7 C 0.231 3.769 8 C 0.102 3.898 9 N -0.476 5.476 10 C -0.005 4.005 11 C 0.217 3.783 12 O -0.587 6.587 13 C -0.551 4.551 14 H 0.074 0.926 15 C 0.027 3.973 16 N -0.922 5.922 17 Si 0.967 3.033 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.261 1.261 21 C 0.016 3.984 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.200 0.800 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.383 0.617 31 H 0.273 0.727 32 H 0.093 0.907 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 8.138 -11.127 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.132 5.132 3 C -0.136 4.136 4 Cl 0.036 6.964 5 C -0.159 4.159 6 N -0.220 5.220 7 C -0.032 4.032 8 C -0.027 4.027 9 N -0.199 5.199 10 C -0.134 4.134 11 C 0.176 3.824 12 O -0.399 6.399 13 C -0.589 4.589 14 H 0.092 0.908 15 C -0.173 4.173 16 N -0.563 5.563 17 Si 0.792 3.208 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.112 4.112 22 H 0.095 0.905 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.217 0.783 26 H 0.132 0.868 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.238 0.762 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.448 7.709 -11.090 13.727 hybrid contribution -2.642 0.929 0.421 2.832 sum -0.194 8.638 -10.669 13.729 Atomic orbital electron populations 1.22478 0.74597 1.06617 1.04664 1.45278 1.08860 1.05223 1.53825 1.21922 0.91289 0.83131 1.17306 1.98366 1.91628 1.08918 1.97486 1.22590 0.95579 0.90781 1.06928 1.70357 1.19325 1.11763 1.20589 1.23069 0.85546 0.90568 1.03991 1.21124 1.01944 0.86704 0.92937 1.69039 1.32852 1.04999 1.13031 1.24540 0.90381 1.00393 0.98122 1.19777 0.89800 0.90813 0.82034 1.86032 1.50870 1.84862 1.18088 1.21841 0.94196 1.33975 1.08924 0.90835 1.25825 1.03380 0.93497 0.94549 1.69394 1.38165 1.36889 1.11889 0.85410 0.78826 0.77785 0.78741 1.20455 1.20909 1.18539 1.24052 0.96012 0.92790 0.98390 0.90530 0.87155 0.87481 0.78287 0.86765 0.90479 0.94772 0.90609 0.76240 0.91695 0.88882 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 9.20 127.77 1.18 2.52 16 2 N -0.45 -13.04 3.16 -526.49 -1.66 -14.70 16 3 C 0.00 0.13 7.49 83.11 0.62 0.75 16 4 Cl 0.01 0.17 28.94 -2.72 -0.08 0.10 16 5 C -0.01 -0.25 11.86 83.54 0.99 0.74 16 6 N -0.50 -17.68 11.25 -187.95 -2.11 -19.80 16 7 C 0.23 7.67 7.05 138.10 0.97 8.65 16 8 C 0.10 3.24 5.14 85.56 0.44 3.68 16 9 N -0.48 -19.06 6.40 -932.76 -5.97 -25.03 16 10 C 0.00 -0.21 5.87 83.58 0.49 0.28 16 11 C 0.22 10.53 1.57 -11.20 -0.02 10.51 16 12 O -0.59 -32.17 13.54 -148.98 -2.02 -34.19 16 13 C -0.55 -27.43 8.69 25.60 0.22 -27.21 16 14 H 0.07 3.48 7.81 -2.91 -0.02 3.45 16 15 C 0.03 1.35 5.40 84.66 0.46 1.80 16 16 N -0.92 -48.27 11.02 21.45 0.24 -48.03 16 17 Si 0.97 39.23 29.54 68.60 2.03 41.26 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 C 0.02 0.64 7.12 83.58 0.60 1.23 16 22 H 0.08 2.03 7.36 -2.39 -0.02 2.01 16 23 H 0.11 1.98 7.93 -2.39 -0.02 1.96 16 24 H 0.11 2.18 6.69 -2.39 -0.02 2.16 16 25 H 0.20 4.64 8.06 -2.91 -0.02 4.62 16 26 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.08 2.06 6.48 -2.39 -0.02 2.04 16 28 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.08 2.94 5.60 -2.39 -0.01 2.93 16 30 H 0.38 21.58 6.34 -74.06 -0.47 21.11 16 31 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 32 H 0.09 3.20 7.72 -2.39 -0.02 3.19 16 33 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -60.94 291.27 -2.96 -63.89 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.68 Total: 33.56 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.95 Total: 2.95 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -9.51 Total: -107.56 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -2.02 Total: -34.19 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.10 kcal Total: -60.94 -2.96 -63.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256565998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.496 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds