Wall clock time and date at job start Mon Mar 30 2020 01:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47061 * 2 1 4 4 C 1.50701 * 109.46865 * 239.99405 * 2 1 3 5 5 H 1.07993 * 119.99917 * 240.00186 * 4 2 1 6 6 C 1.37879 * 119.99845 * 60.00410 * 4 2 1 7 7 N 1.31510 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99615 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47354 * 90.00151 * 8 6 4 10 10 H 1.48508 * 109.46987 * 209.99961 * 8 6 4 11 11 H 1.48504 * 109.47382 * 329.99945 * 8 6 4 12 12 N 1.46496 * 109.46572 * 119.99613 * 2 1 3 13 13 C 1.46500 * 120.00396 * 60.00391 * 12 2 1 14 14 C 1.34782 * 119.99947 * 239.99489 * 12 2 1 15 15 O 1.21621 * 119.99868 * 6.50741 * 14 12 2 16 16 C 1.47303 * 120.00054 * 186.50505 * 14 12 2 17 17 C 1.41339 * 126.43410 * 7.90309 * 16 14 12 18 18 N 1.30413 * 108.04551 * 179.97438 * 17 16 14 19 19 N 1.39927 * 108.96066 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.74861 * 179.97438 * 19 18 17 21 21 C 1.34346 * 108.50007 * 359.72563 * 19 18 17 22 22 Cl 1.73595 * 126.31968 * 180.26253 * 21 19 18 23 23 H 1.09007 * 109.47237 * 60.00537 * 1 2 3 24 24 H 1.08995 * 109.47496 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47148 * 300.00639 * 1 2 3 26 26 H 0.96994 * 120.00166 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47720 * 95.89130 * 13 12 2 28 28 H 1.08999 * 109.47016 * 335.89205 * 13 12 2 29 29 H 1.09000 * 109.47041 * 215.89657 * 13 12 2 30 30 H 1.08005 * 125.97915 * 359.97438 * 17 16 14 31 31 H 1.09001 * 109.46968 * 89.97524 * 20 19 18 32 32 H 1.08998 * 109.47133 * 209.97775 * 20 19 18 33 33 H 1.09008 * 109.47339 * 329.97441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3224 -1.1199 -4.0078 9 1 1.3447 -2.1619 -4.4122 10 1 2.4873 -0.1406 -5.1120 11 1 3.6308 -1.7570 -3.7118 12 7 2.0182 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 2.9900 1.1577 1.9543 16 6 3.4016 -0.7648 3.2093 17 6 3.3951 -2.1647 3.4043 18 7 4.0345 -2.4213 4.5116 19 7 4.4748 -1.2171 5.0719 20 6 5.2315 -1.0794 6.3187 21 6 4.0913 -0.2089 4.2711 22 17 4.4009 1.4803 4.5245 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1610 -3.4844 27 1 2.4665 -2.7352 1.0645 28 1 0.7420 -2.3277 0.8968 29 1 1.5210 -2.2599 2.4958 30 1 2.9401 -2.8942 2.7507 31 1 6.2990 -1.1228 6.1025 32 1 4.9937 -0.1230 6.7843 33 1 4.9649 -1.8900 6.9970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262822669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:00 Heat of formation + Delta-G solvation = 59.464805 kcal Electronic energy + Delta-G solvation = -18851.605313 eV Core-core repulsion = 15748.359896 eV Total energy + Delta-G solvation = -3103.245417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38568 -38.58062 -36.83553 -35.25063 -33.75240 -32.62693 -30.25680 -29.32701 -27.02828 -26.33877 -25.16025 -22.78482 -21.29501 -20.46433 -18.88720 -17.07507 -16.49466 -15.96424 -15.92552 -15.25491 -14.47523 -14.29668 -14.20698 -13.74920 -13.14622 -13.03312 -12.77684 -12.47622 -12.26340 -11.96438 -11.67000 -11.50403 -11.13904 -11.00685 -10.75161 -10.72672 -10.60558 -10.20882 -10.11623 -9.45938 -9.12971 -8.94079 -8.58127 -8.38505 -7.49863 -6.02774 -4.10583 1.37297 1.40699 2.27658 2.52464 3.29559 3.36774 3.39801 3.92295 4.02553 4.37407 4.47442 4.86679 4.92851 5.12212 5.19043 5.28336 5.29152 5.55728 5.72041 6.03018 6.25933 6.34363 6.46298 6.83351 6.90062 7.12422 7.38348 7.52108 7.59313 7.76933 8.08126 8.24767 8.59808 8.88930 9.14553 9.56071 11.02429 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029080 B = 0.005164 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.621853 B = 5420.396372 C = 5742.280229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.587 5.587 13 C 0.075 3.925 14 C 0.578 3.422 15 O -0.544 6.544 16 C -0.252 4.252 17 C 0.072 3.928 18 N -0.285 5.285 19 N -0.362 5.362 20 C 0.094 3.906 21 C 0.172 3.828 22 Cl 0.024 6.976 23 H 0.093 0.907 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.215 0.785 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -5.176 15.821 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.317 5.317 13 C -0.069 4.069 14 C 0.364 3.636 15 O -0.423 6.423 16 C -0.268 4.268 17 C -0.114 4.114 18 N -0.106 5.106 19 N -0.145 5.145 20 C -0.047 4.047 21 C 0.014 3.986 22 Cl 0.052 6.948 23 H 0.112 0.888 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.616 -5.161 16.535 18.209 hybrid contribution 0.156 0.172 -1.321 1.341 sum 5.772 -4.990 15.213 17.019 Atomic orbital electron populations 1.22097 0.98239 0.99326 1.00884 1.18952 0.90897 0.94542 0.79561 0.91727 1.21341 1.31732 1.12973 0.90262 0.92233 1.24883 0.94998 0.94972 0.98914 1.69879 1.36439 1.22604 1.23688 0.86506 0.79188 0.79283 0.82465 1.20650 1.21172 1.19955 1.47972 1.48900 1.11462 1.23388 1.22033 1.01423 0.83730 0.99735 1.17043 0.79159 0.86306 0.81046 1.90756 1.62171 1.14234 1.75111 1.20308 1.12474 0.93634 1.00359 1.25077 0.96167 0.95556 0.94603 1.77300 1.18845 1.01904 1.12566 1.48492 1.43272 1.03165 1.19566 1.22008 0.95879 1.04509 0.82325 1.22015 0.98927 0.84496 0.93141 1.98435 1.94048 1.06399 1.95942 0.88837 0.95133 0.96878 0.92735 0.93059 0.90334 0.92234 0.76864 0.90032 0.89205 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.96 37.16 0.33 -3.19 16 2 C 0.26 6.67 2.62 -69.08 -0.18 6.49 16 3 H 0.06 1.92 6.92 -51.93 -0.36 1.56 16 4 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.59 -12.71 2.75 -176.58 -0.49 -13.19 16 13 C 0.07 1.23 7.85 59.85 0.47 1.70 16 14 C 0.58 12.60 7.65 -12.57 -0.10 12.51 16 15 O -0.54 -13.59 15.03 5.26 0.08 -13.51 16 16 C -0.25 -4.48 5.93 -105.02 -0.62 -5.11 16 17 C 0.07 1.06 9.87 -16.98 -0.17 0.90 16 18 N -0.28 -4.10 12.49 30.87 0.39 -3.71 16 19 N -0.36 -4.80 3.98 -64.32 -0.26 -5.06 16 20 C 0.09 0.75 11.28 59.84 0.67 1.42 16 21 C 0.17 2.71 7.52 -16.44 -0.12 2.59 16 22 Cl 0.02 0.35 27.38 -51.86 -1.42 -1.07 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 24 H 0.03 0.66 6.67 -51.93 -0.35 0.32 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.05 0.78 7.27 -51.93 -0.38 0.40 16 28 H 0.08 1.31 6.44 -51.93 -0.33 0.97 16 29 H 0.06 0.81 5.43 -51.93 -0.28 0.53 16 30 H 0.22 2.64 4.52 -52.48 -0.24 2.40 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.58 7.78 -51.93 -0.40 0.18 16 33 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -32.58 290.63 -5.27 -37.85 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.46 Total: -1.77 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.10 Total: 4.57 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.27 Total: -46.45 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.42 Total: -1.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.58 -5.27 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.310 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds