Wall clock time and date at job start Mon Mar 30 2020 01:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47061 * 2 1 4 4 C 1.50701 * 109.46865 * 239.99405 * 2 1 3 5 5 H 1.07993 * 119.99917 * 240.00186 * 4 2 1 6 6 C 1.37879 * 119.99845 * 60.00410 * 4 2 1 7 7 N 1.31510 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99615 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47354 * 90.00151 * 8 6 4 10 10 H 1.48508 * 109.46987 * 209.99961 * 8 6 4 11 11 H 1.48504 * 109.47382 * 329.99945 * 8 6 4 12 12 N 1.46496 * 109.46572 * 119.99613 * 2 1 3 13 13 C 1.46500 * 120.00396 * 60.00391 * 12 2 1 14 14 C 1.34782 * 119.99947 * 239.99489 * 12 2 1 15 15 O 1.21621 * 119.99868 * 6.50741 * 14 12 2 16 16 C 1.47303 * 120.00054 * 186.50505 * 14 12 2 17 17 C 1.41339 * 126.43410 * 7.90309 * 16 14 12 18 18 N 1.30413 * 108.04551 * 179.97438 * 17 16 14 19 19 N 1.39927 * 108.96066 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.74861 * 179.97438 * 19 18 17 21 21 C 1.34346 * 108.50007 * 359.72563 * 19 18 17 22 22 Cl 1.73595 * 126.31968 * 180.26253 * 21 19 18 23 23 H 1.09007 * 109.47237 * 60.00537 * 1 2 3 24 24 H 1.08995 * 109.47496 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47148 * 300.00639 * 1 2 3 26 26 H 0.96994 * 120.00166 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47720 * 95.89130 * 13 12 2 28 28 H 1.08999 * 109.47016 * 335.89205 * 13 12 2 29 29 H 1.09000 * 109.47041 * 215.89657 * 13 12 2 30 30 H 1.08005 * 125.97915 * 359.97438 * 17 16 14 31 31 H 1.09001 * 109.46968 * 89.97524 * 20 19 18 32 32 H 1.08998 * 109.47133 * 209.97775 * 20 19 18 33 33 H 1.09008 * 109.47339 * 329.97441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3224 -1.1199 -4.0078 9 1 1.3447 -2.1619 -4.4122 10 1 2.4873 -0.1406 -5.1120 11 1 3.6308 -1.7570 -3.7118 12 7 2.0182 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 2.9900 1.1577 1.9543 16 6 3.4016 -0.7648 3.2093 17 6 3.3951 -2.1647 3.4043 18 7 4.0345 -2.4213 4.5116 19 7 4.4748 -1.2171 5.0719 20 6 5.2315 -1.0794 6.3187 21 6 4.0913 -0.2089 4.2711 22 17 4.4009 1.4803 4.5245 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1610 -3.4844 27 1 2.4665 -2.7352 1.0645 28 1 0.7420 -2.3277 0.8968 29 1 1.5210 -2.2599 2.4958 30 1 2.9401 -2.8942 2.7507 31 1 6.2990 -1.1228 6.1025 32 1 4.9937 -0.1230 6.7843 33 1 4.9649 -1.8900 6.9970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262822669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:59 Heat of formation + Delta-G solvation = 37.440853 kcal Electronic energy + Delta-G solvation = -18852.560344 eV Core-core repulsion = 15748.359896 eV Total energy + Delta-G solvation = -3104.200447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.56731 -40.22156 -38.02495 -37.04181 -35.11742 -34.23330 -31.78193 -30.84694 -28.15890 -27.70517 -27.23004 -24.27780 -22.49957 -21.97953 -20.41858 -18.53563 -18.22283 -17.46660 -17.05570 -17.00815 -16.08834 -15.84242 -15.54195 -14.97298 -14.75152 -14.29297 -13.96547 -13.69837 -13.62389 -13.43783 -13.13775 -12.93496 -12.83979 -12.71313 -12.62761 -12.29926 -12.11468 -12.07816 -11.89095 -11.11747 -10.68245 -10.51519 -10.44140 -9.86165 -9.21428 -8.08971 -6.25206 0.15552 0.22910 1.04047 1.45387 1.47000 1.54006 1.56940 2.33837 2.45943 2.54757 3.18983 3.36293 3.83596 3.93210 4.25115 4.31504 4.38374 4.44596 4.59376 4.73169 4.80130 4.95721 5.06897 5.13230 5.16161 5.45615 5.53142 5.70176 5.73997 6.10750 6.21955 6.25833 6.82743 6.89041 7.37587 7.54657 8.95315 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029080 B = 0.005164 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.621853 B = 5420.396372 C = 5742.280229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.265 3.735 3 H 0.011 0.989 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.594 5.594 13 C 0.069 3.931 14 C 0.570 3.430 15 O -0.591 6.591 16 C -0.284 4.284 17 C 0.080 3.920 18 N -0.284 5.284 19 N -0.348 5.348 20 C 0.079 3.921 21 C 0.171 3.829 22 Cl 0.027 6.973 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.018 0.982 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.237 0.763 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -7.505 16.997 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.163 3.837 3 H 0.029 0.971 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.324 5.324 13 C -0.073 4.073 14 C 0.359 3.641 15 O -0.473 6.473 16 C -0.300 4.300 17 C -0.105 4.105 18 N -0.106 5.106 19 N -0.130 5.130 20 C -0.060 4.060 21 C 0.011 3.989 22 Cl 0.055 6.945 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.253 0.747 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.404 -7.548 17.759 20.332 hybrid contribution -0.022 0.931 -1.554 1.811 sum 6.382 -6.617 16.206 18.632 Atomic orbital electron populations 1.21888 0.97193 1.00202 0.99851 1.18547 0.91628 0.92263 0.81242 0.97127 1.21589 1.31762 1.13039 0.90972 0.91897 1.25716 0.95133 0.95621 1.01949 1.70028 1.37448 1.23936 1.24317 0.85461 0.78849 0.78214 0.78493 1.19236 1.21402 1.19581 1.47932 1.48915 1.13341 1.22205 1.22333 1.01970 0.80942 1.02039 1.17599 0.78689 0.86045 0.81756 1.90713 1.63795 1.16377 1.76444 1.20001 1.14801 0.94964 1.00260 1.25295 0.95932 0.94448 0.94838 1.77293 1.18669 1.02287 1.12303 1.48901 1.42029 1.02053 1.20033 1.22527 0.96415 1.06404 0.80627 1.22070 0.98444 0.85141 0.93206 1.98436 1.93925 1.06252 1.95862 0.91379 0.93145 0.96326 0.92738 0.91234 0.90390 0.88990 0.74748 0.88135 0.87610 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.96 71.98 0.64 -5.82 16 2 C 0.26 13.94 2.62 44.25 0.12 14.06 16 3 H 0.01 0.68 6.92 -2.39 -0.02 0.66 16 4 C -0.54 -29.02 8.37 25.60 0.21 -28.81 16 5 H 0.06 3.29 7.65 -2.91 -0.02 3.27 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 8 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 N -0.59 -25.82 2.75 -830.82 -2.29 -28.10 16 13 C 0.07 2.15 7.85 127.77 1.00 3.16 16 14 C 0.57 25.22 7.65 86.63 0.66 25.89 16 15 O -0.59 -30.79 15.03 -4.10 -0.06 -30.85 16 16 C -0.28 -9.83 5.93 -20.12 -0.12 -9.95 16 17 C 0.08 2.18 9.87 85.67 0.85 3.03 16 18 N -0.28 -7.32 12.49 -56.26 -0.70 -8.03 16 19 N -0.35 -8.30 3.98 -357.42 -1.42 -9.73 16 20 C 0.08 0.99 11.28 127.77 1.44 2.44 16 21 C 0.17 5.18 7.52 84.32 0.63 5.82 16 22 Cl 0.03 0.79 27.38 -2.72 -0.07 0.71 16 23 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 24 H 0.05 2.19 6.67 -2.39 -0.02 2.18 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.07 1.92 7.27 -2.39 -0.02 1.90 16 28 H 0.08 2.44 6.44 -2.39 -0.02 2.42 16 29 H 0.09 2.26 5.43 -2.39 -0.01 2.25 16 30 H 0.24 5.03 4.52 -2.91 -0.01 5.02 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 1.04 7.78 -2.39 -0.02 1.02 16 33 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -72.53 290.63 4.76 -67.77 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.15 Total: 4.96 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.89 Total: 11.08 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.17 Total: -98.72 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -0.07 Total: 0.71 kcal Total: -72.53 4.76 -67.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.213 kcal (2) G-P(sol) polarization free energy of solvation -72.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds