Wall clock time and date at job start Mon Mar 30 2020 01:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47416 * 2 1 4 4 C 1.50708 * 109.46877 * 119.99866 * 2 1 3 5 5 H 1.07994 * 120.00317 * 119.99551 * 4 2 1 6 6 C 1.37877 * 119.99923 * 299.99690 * 4 2 1 7 7 N 1.31513 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46994 * 60.00067 * 8 6 4 10 10 H 1.48497 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47159 * 300.00433 * 8 6 4 12 12 N 1.46494 * 109.47404 * 239.99341 * 2 1 3 13 13 C 1.46506 * 120.00041 * 300.01020 * 12 2 1 14 14 C 1.34774 * 119.99951 * 120.00049 * 12 2 1 15 15 O 1.21620 * 120.00178 * 355.65995 * 14 12 2 16 16 C 1.47304 * 120.00060 * 175.66228 * 14 12 2 17 17 C 1.41339 * 126.43383 * 35.21923 * 16 14 12 18 18 N 1.30422 * 108.04317 * 180.02562 * 17 16 14 19 19 N 1.39922 * 108.96066 * 359.97438 * 18 17 16 20 20 C 1.46501 * 125.74715 * 179.97438 * 19 18 17 21 21 C 1.34353 * 108.50160 * 359.73094 * 19 18 17 22 22 Cl 1.73593 * 126.31743 * 180.25877 * 21 19 18 23 23 H 1.09004 * 109.47095 * 300.00541 * 1 2 3 24 24 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46937 * 60.00263 * 1 2 3 26 26 H 0.97005 * 120.00428 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47193 * 95.39996 * 13 12 2 28 28 H 1.09004 * 109.46548 * 215.39848 * 13 12 2 29 29 H 1.08998 * 109.46990 * 335.39325 * 13 12 2 30 30 H 1.07997 * 125.97897 * 359.97438 * 17 16 14 31 31 H 1.09003 * 109.46356 * 89.98307 * 20 19 18 32 32 H 1.08997 * 109.47166 * 209.97472 * 20 19 18 33 33 H 1.08997 * 109.47164 * 329.98465 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.8061 -1.1209 4.0083 10 1 1.8258 -0.4204 5.2205 11 1 1.8256 -2.5201 4.0079 12 7 2.0183 -0.6907 -1.1960 13 6 1.6643 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0832 15 8 3.0221 1.1491 -1.9324 16 6 3.3629 -0.7551 -3.2355 17 6 2.7469 -1.8004 -3.9606 18 7 3.5661 -2.1752 -4.9036 19 7 4.7288 -1.4001 -4.8305 20 6 5.8904 -1.5140 -5.7159 21 6 4.5981 -0.5303 -3.8150 22 17 5.7666 0.6536 -3.3185 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 0.7087 1.1615 3.4844 27 1 0.7920 -2.1449 -2.0793 28 1 2.5019 -2.6060 -1.9008 29 1 1.4358 -2.5724 -0.4759 30 1 1.7694 -2.2166 -3.7669 31 1 5.7594 -0.8541 -6.5736 32 1 6.7910 -1.2287 -5.1722 33 1 5.9849 -2.5436 -6.0608 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262822670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:02 Heat of formation + Delta-G solvation = 47.920995 kcal Electronic energy + Delta-G solvation = -18856.888404 eV Core-core repulsion = 15753.142410 eV Total energy + Delta-G solvation = -3103.745994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.37908 -38.57464 -36.85524 -35.21333 -33.69249 -32.64211 -30.29040 -29.24391 -27.03915 -26.15002 -25.16497 -22.83259 -21.30373 -20.49943 -18.80734 -17.14902 -16.46183 -16.13441 -15.69882 -15.27429 -14.70130 -14.32679 -14.09401 -13.66060 -13.16697 -13.01862 -12.76014 -12.43463 -12.16343 -12.01247 -11.63435 -11.56151 -11.29963 -11.00623 -10.82477 -10.78927 -10.63777 -10.21125 -10.12804 -9.46479 -9.15891 -8.98240 -8.55345 -8.37714 -7.50998 -6.03095 -4.10872 1.36886 1.42176 2.30377 2.51013 3.30734 3.35800 3.37460 3.70706 4.07421 4.35669 4.46975 4.86847 4.89905 5.12784 5.20396 5.27958 5.30169 5.59473 5.83872 6.02409 6.29109 6.43122 6.46115 6.82246 6.90660 7.12622 7.36977 7.50428 7.59716 7.76648 8.07676 8.24816 8.59161 8.87987 9.13345 9.55486 11.02110 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.005373 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.806332 B = 5209.581450 C = 5483.877782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.585 5.585 13 C 0.080 3.920 14 C 0.578 3.422 15 O -0.542 6.542 16 C -0.248 4.248 17 C 0.085 3.915 18 N -0.283 5.283 19 N -0.361 5.361 20 C 0.094 3.906 21 C 0.167 3.833 22 Cl 0.020 6.980 23 H 0.093 0.907 24 H 0.029 0.971 25 H 0.012 0.988 26 H 0.263 0.737 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.201 0.799 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -6.203 -14.279 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.315 5.315 13 C -0.064 4.064 14 C 0.364 3.636 15 O -0.421 6.421 16 C -0.264 4.264 17 C -0.101 4.101 18 N -0.104 5.104 19 N -0.145 5.145 20 C -0.047 4.047 21 C 0.011 3.989 22 Cl 0.048 6.952 23 H 0.111 0.889 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.218 0.782 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.257 -6.154 -15.043 17.800 hybrid contribution 0.366 0.026 1.504 1.548 sum 7.623 -6.128 -13.539 16.703 Atomic orbital electron populations 1.22083 0.98131 0.99394 1.00834 1.18950 0.90920 0.94543 0.79587 0.91760 1.21296 1.31810 1.13026 0.90286 0.92287 1.24876 0.94961 0.94984 0.98878 1.69872 1.36295 1.22580 1.23804 0.86568 0.79221 0.79583 0.82077 1.20300 1.21206 1.20255 1.48038 1.48820 1.11502 1.23174 1.21810 0.98501 0.83589 1.02498 1.17080 0.79282 0.86178 0.81088 1.90753 1.60895 1.14790 1.75657 1.20277 0.95612 1.05494 1.04983 1.24285 0.99809 0.94205 0.91776 1.77265 0.92983 1.16900 1.23287 1.48431 1.15389 1.26360 1.24301 1.22006 0.84243 1.05006 0.93397 1.21962 0.93467 0.91726 0.91785 1.98438 1.55446 1.52173 1.89105 0.88878 0.95163 0.96909 0.92666 0.93894 0.92605 0.89882 0.78205 0.90056 0.89173 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.67 2.63 -69.08 -0.18 6.49 16 3 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.18 7.95 -34.44 -0.27 -14.46 16 5 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.58 -12.71 2.75 -176.58 -0.49 -13.19 16 13 C 0.08 1.35 7.93 59.85 0.47 1.83 16 14 C 0.58 12.59 7.52 -12.57 -0.09 12.49 16 15 O -0.54 -13.68 15.75 5.26 0.08 -13.60 16 16 C -0.25 -4.38 5.42 -105.02 -0.57 -4.95 16 17 C 0.09 1.24 9.70 -16.97 -0.16 1.08 16 18 N -0.28 -4.00 12.49 30.87 0.39 -3.62 16 19 N -0.36 -4.77 3.98 -64.32 -0.26 -5.03 16 20 C 0.09 0.76 11.28 59.85 0.67 1.43 16 21 C 0.17 2.65 7.51 -16.43 -0.12 2.53 16 22 Cl 0.02 0.30 27.99 -51.86 -1.45 -1.15 16 23 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.04 0.61 7.28 -51.93 -0.38 0.23 16 28 H 0.06 0.84 5.82 -51.93 -0.30 0.53 16 29 H 0.08 1.48 7.11 -51.93 -0.37 1.12 16 30 H 0.20 2.35 6.12 -52.49 -0.32 2.03 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.60 7.78 -51.93 -0.40 0.19 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 294.28 15.07 4.43 4.43 Total: -1.00 -32.47 294.28 -5.34 -37.82 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -3.64 Total: -2.19 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.02 Total: 4.97 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.27 Total: -46.30 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.45 Total: -1.15 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.47 -5.34 -37.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.738 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds