Wall clock time and date at job start Mon Mar 30 2020 01:21:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08992 * 109.47416 * 2 1
4 4 C 1.50708 * 109.46877 * 119.99866 * 2 1 3
5 5 H 1.07994 * 120.00317 * 119.99551 * 4 2 1
6 6 C 1.37877 * 119.99923 * 299.99690 * 4 2 1
7 7 N 1.31513 * 120.00122 * 0.02562 * 6 4 2
8 8 Si 1.86801 * 120.00089 * 179.97438 * 6 4 2
9 9 H 1.48494 * 109.46994 * 60.00067 * 8 6 4
10 10 H 1.48497 * 109.47214 * 180.02562 * 8 6 4
11 11 H 1.48499 * 109.47159 * 300.00433 * 8 6 4
12 12 N 1.46494 * 109.47404 * 239.99341 * 2 1 3
13 13 C 1.46506 * 120.00041 * 300.01020 * 12 2 1
14 14 C 1.34774 * 119.99951 * 120.00049 * 12 2 1
15 15 O 1.21620 * 120.00178 * 355.65995 * 14 12 2
16 16 C 1.47304 * 120.00060 * 175.66228 * 14 12 2
17 17 C 1.41339 * 126.43383 * 35.21923 * 16 14 12
18 18 N 1.30422 * 108.04317 * 180.02562 * 17 16 14
19 19 N 1.39922 * 108.96066 * 359.97438 * 18 17 16
20 20 C 1.46501 * 125.74715 * 179.97438 * 19 18 17
21 21 C 1.34353 * 108.50160 * 359.73094 * 19 18 17
22 22 Cl 1.73593 * 126.31743 * 180.25877 * 21 19 18
23 23 H 1.09004 * 109.47095 * 300.00541 * 1 2 3
24 24 H 1.09001 * 109.47497 * 180.02562 * 1 2 3
25 25 H 1.09001 * 109.46937 * 60.00263 * 1 2 3
26 26 H 0.97005 * 120.00428 * 180.02562 * 7 6 4
27 27 H 1.08996 * 109.47193 * 95.39996 * 13 12 2
28 28 H 1.09004 * 109.46548 * 215.39848 * 13 12 2
29 29 H 1.08998 * 109.46990 * 335.39325 * 13 12 2
30 30 H 1.07997 * 125.97897 * 359.97438 * 17 16 14
31 31 H 1.09003 * 109.46356 * 89.98307 * 20 19 18
32 32 H 1.08997 * 109.47166 * 209.97472 * 20 19 18
33 33 H 1.08997 * 109.47164 * 329.98465 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.6531 -1.5885 1.1316
6 6 1.6992 -0.2393 2.4828
7 7 0.9427 0.8297 2.6034
8 14 2.3212 -1.1202 4.0081
9 1 3.8061 -1.1209 4.0083
10 1 1.8258 -0.4204 5.2205
11 1 1.8256 -2.5201 4.0079
12 7 2.0183 -0.6907 -1.1960
13 6 1.6643 -2.0933 -1.4278
14 6 2.7932 -0.0358 -2.0832
15 8 3.0221 1.1491 -1.9324
16 6 3.3629 -0.7551 -3.2355
17 6 2.7469 -1.8004 -3.9606
18 7 3.5661 -2.1752 -4.9036
19 7 4.7288 -1.4001 -4.8305
20 6 5.8904 -1.5140 -5.7159
21 6 4.5981 -0.5303 -3.8150
22 17 5.7666 0.6536 -3.3185
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 -0.3633 0.5138 -0.8900
26 1 0.7087 1.1615 3.4844
27 1 0.7920 -2.1449 -2.0793
28 1 2.5019 -2.6060 -1.9008
29 1 1.4358 -2.5724 -0.4759
30 1 1.7694 -2.2166 -3.7669
31 1 5.7594 -0.8541 -6.5736
32 1 6.7910 -1.2287 -5.1722
33 1 5.9849 -2.5436 -6.0608
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001262822670.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:21:02
Heat of formation + Delta-G solvation = 47.920995 kcal
Electronic energy + Delta-G solvation = -18856.888404 eV
Core-core repulsion = 15753.142410 eV
Total energy + Delta-G solvation = -3103.745994 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.37908 -38.57464 -36.85524 -35.21333 -33.69249 -32.64211 -30.29040 -29.24391
-27.03915 -26.15002 -25.16497 -22.83259 -21.30373 -20.49943 -18.80734 -17.14902
-16.46183 -16.13441 -15.69882 -15.27429 -14.70130 -14.32679 -14.09401 -13.66060
-13.16697 -13.01862 -12.76014 -12.43463 -12.16343 -12.01247 -11.63435 -11.56151
-11.29963 -11.00623 -10.82477 -10.78927 -10.63777 -10.21125 -10.12804 -9.46479
-9.15891 -8.98240 -8.55345 -8.37714 -7.50998 -6.03095 -4.10872 1.36886
1.42176 2.30377 2.51013 3.30734 3.35800 3.37460 3.70706 4.07421
4.35669 4.46975 4.86847 4.89905 5.12784 5.20396 5.27958 5.30169
5.59473 5.83872 6.02409 6.29109 6.43122 6.46115 6.82246 6.90660
7.12622 7.36977 7.50428 7.59716 7.76648 8.07676 8.24816 8.59161
8.87987 9.13345 9.55486 11.02110
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.026240 B = 0.005373 C = 0.005105
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1066.806332 B = 5209.581450 C = 5483.877782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.260 3.740
3 H 0.065 0.935
4 C -0.525 4.525
5 H 0.059 0.941
6 C 0.065 3.935
7 N -0.887 5.887
8 Si 0.898 3.102
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.277 1.277
12 N -0.585 5.585
13 C 0.080 3.920
14 C 0.578 3.422
15 O -0.542 6.542
16 C -0.248 4.248
17 C 0.085 3.915
18 N -0.283 5.283
19 N -0.361 5.361
20 C 0.094 3.906
21 C 0.167 3.833
22 Cl 0.020 6.980
23 H 0.093 0.907
24 H 0.029 0.971
25 H 0.012 0.988
26 H 0.263 0.737
27 H 0.043 0.957
28 H 0.055 0.945
29 H 0.082 0.918
30 H 0.201 0.799
31 H 0.081 0.919
32 H 0.090 0.910
33 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.828 -6.203 -14.279 17.000
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.160 3.840
3 H 0.082 0.918
4 C -0.564 4.564
5 H 0.077 0.923
6 C -0.137 4.137
7 N -0.526 5.526
8 Si 0.726 3.274
9 H -0.203 1.203
10 H -0.212 1.212
11 H -0.203 1.203
12 N -0.315 5.315
13 C -0.064 4.064
14 C 0.364 3.636
15 O -0.421 6.421
16 C -0.264 4.264
17 C -0.101 4.101
18 N -0.104 5.104
19 N -0.145 5.145
20 C -0.047 4.047
21 C 0.011 3.989
22 Cl 0.048 6.952
23 H 0.111 0.889
24 H 0.048 0.952
25 H 0.031 0.969
26 H 0.073 0.927
27 H 0.061 0.939
28 H 0.074 0.926
29 H 0.101 0.899
30 H 0.218 0.782
31 H 0.099 0.901
32 H 0.108 0.892
33 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 7.257 -6.154 -15.043 17.800
hybrid contribution 0.366 0.026 1.504 1.548
sum 7.623 -6.128 -13.539 16.703
Atomic orbital electron populations
1.22083 0.98131 0.99394 1.00834 1.18950 0.90920 0.94543 0.79587
0.91760 1.21296 1.31810 1.13026 0.90286 0.92287 1.24876 0.94961
0.94984 0.98878 1.69872 1.36295 1.22580 1.23804 0.86568 0.79221
0.79583 0.82077 1.20300 1.21206 1.20255 1.48038 1.48820 1.11502
1.23174 1.21810 0.98501 0.83589 1.02498 1.17080 0.79282 0.86178
0.81088 1.90753 1.60895 1.14790 1.75657 1.20277 0.95612 1.05494
1.04983 1.24285 0.99809 0.94205 0.91776 1.77265 0.92983 1.16900
1.23287 1.48431 1.15389 1.26360 1.24301 1.22006 0.84243 1.05006
0.93397 1.21962 0.93467 0.91726 0.91785 1.98438 1.55446 1.52173
1.89105 0.88878 0.95163 0.96909 0.92666 0.93894 0.92605 0.89882
0.78205 0.90056 0.89173 0.88438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16
2 C 0.26 6.67 2.63 -69.08 -0.18 6.49 16
3 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16
4 C -0.53 -14.18 7.95 -34.44 -0.27 -14.46 16
5 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16
6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16
7 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16
8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16
9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
12 N -0.58 -12.71 2.75 -176.58 -0.49 -13.19 16
13 C 0.08 1.35 7.93 59.85 0.47 1.83 16
14 C 0.58 12.59 7.52 -12.57 -0.09 12.49 16
15 O -0.54 -13.68 15.75 5.26 0.08 -13.60 16
16 C -0.25 -4.38 5.42 -105.02 -0.57 -4.95 16
17 C 0.09 1.24 9.70 -16.97 -0.16 1.08 16
18 N -0.28 -4.00 12.49 30.87 0.39 -3.62 16
19 N -0.36 -4.77 3.98 -64.32 -0.26 -5.03 16
20 C 0.09 0.76 11.28 59.85 0.67 1.43 16
21 C 0.17 2.65 7.51 -16.43 -0.12 2.53 16
22 Cl 0.02 0.30 27.99 -51.86 -1.45 -1.15 16
23 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16
24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16
25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16
26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
27 H 0.04 0.61 7.28 -51.93 -0.38 0.23 16
28 H 0.06 0.84 5.82 -51.93 -0.30 0.53 16
29 H 0.08 1.48 7.11 -51.93 -0.37 1.12 16
30 H 0.20 2.35 6.12 -52.49 -0.32 2.03 16
31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.09 0.60 7.78 -51.93 -0.40 0.19 16
33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 294.28 15.07 4.43 4.43
Total: -1.00 -32.47 294.28 -5.34 -37.82
By element:
Atomic # 1 Polarization: 1.45 SS G_CDS: -3.64 Total: -2.19 kcal
Atomic # 6 Polarization: 4.99 SS G_CDS: -0.02 Total: 4.97 kcal
Atomic # 7 Polarization: -46.57 SS G_CDS: 0.27 Total: -46.30 kcal
Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.60 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Atomic # 17 Polarization: 0.30 SS G_CDS: -1.45 Total: -1.15 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -32.47 -5.34 -37.82 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001262822670.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.738 kcal
(2) G-P(sol) polarization free energy of solvation -32.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.921 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds