Wall clock time and date at job start Mon Mar 30 2020 01:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47416 * 2 1 4 4 C 1.50708 * 109.46877 * 119.99866 * 2 1 3 5 5 H 1.07994 * 120.00317 * 119.99551 * 4 2 1 6 6 C 1.37877 * 119.99923 * 299.99690 * 4 2 1 7 7 N 1.31513 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46994 * 60.00067 * 8 6 4 10 10 H 1.48497 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47159 * 300.00433 * 8 6 4 12 12 N 1.46494 * 109.47404 * 239.99341 * 2 1 3 13 13 C 1.46506 * 120.00041 * 300.01020 * 12 2 1 14 14 C 1.34774 * 119.99951 * 120.00049 * 12 2 1 15 15 O 1.21620 * 120.00178 * 355.65995 * 14 12 2 16 16 C 1.47304 * 120.00060 * 175.66228 * 14 12 2 17 17 C 1.41339 * 126.43383 * 35.21923 * 16 14 12 18 18 N 1.30422 * 108.04317 * 180.02562 * 17 16 14 19 19 N 1.39922 * 108.96066 * 359.97438 * 18 17 16 20 20 C 1.46501 * 125.74715 * 179.97438 * 19 18 17 21 21 C 1.34353 * 108.50160 * 359.73094 * 19 18 17 22 22 Cl 1.73593 * 126.31743 * 180.25877 * 21 19 18 23 23 H 1.09004 * 109.47095 * 300.00541 * 1 2 3 24 24 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46937 * 60.00263 * 1 2 3 26 26 H 0.97005 * 120.00428 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47193 * 95.39996 * 13 12 2 28 28 H 1.09004 * 109.46548 * 215.39848 * 13 12 2 29 29 H 1.08998 * 109.46990 * 335.39325 * 13 12 2 30 30 H 1.07997 * 125.97897 * 359.97438 * 17 16 14 31 31 H 1.09003 * 109.46356 * 89.98307 * 20 19 18 32 32 H 1.08997 * 109.47166 * 209.97472 * 20 19 18 33 33 H 1.08997 * 109.47164 * 329.98465 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.8061 -1.1209 4.0083 10 1 1.8258 -0.4204 5.2205 11 1 1.8256 -2.5201 4.0079 12 7 2.0183 -0.6907 -1.1960 13 6 1.6643 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0832 15 8 3.0221 1.1491 -1.9324 16 6 3.3629 -0.7551 -3.2355 17 6 2.7469 -1.8004 -3.9606 18 7 3.5661 -2.1752 -4.9036 19 7 4.7288 -1.4001 -4.8305 20 6 5.8904 -1.5140 -5.7159 21 6 4.5981 -0.5303 -3.8150 22 17 5.7666 0.6536 -3.3185 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 0.7087 1.1615 3.4844 27 1 0.7920 -2.1449 -2.0793 28 1 2.5019 -2.6060 -1.9008 29 1 1.4358 -2.5724 -0.4759 30 1 1.7694 -2.2166 -3.7669 31 1 5.7594 -0.8541 -6.5736 32 1 6.7910 -1.2287 -5.1722 33 1 5.9849 -2.5436 -6.0608 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262822670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:01 Heat of formation + Delta-G solvation = 26.008099 kcal Electronic energy + Delta-G solvation = -18857.838619 eV Core-core repulsion = 15753.142410 eV Total energy + Delta-G solvation = -3104.696209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54653 -40.23141 -38.05022 -37.03070 -35.02722 -34.26517 -31.80185 -30.79743 -28.04844 -27.63150 -27.23707 -24.31688 -22.50551 -21.99060 -20.33936 -18.57027 -18.28386 -17.55823 -17.02295 -16.88979 -16.12463 -15.99567 -15.44452 -14.90781 -14.74644 -14.23003 -13.92984 -13.67729 -13.61187 -13.45309 -13.19671 -12.94662 -12.81594 -12.71497 -12.70485 -12.53075 -12.13473 -12.09044 -11.95595 -11.15349 -10.72916 -10.51112 -10.45230 -9.81347 -9.23823 -8.09925 -6.26047 0.18320 0.23043 1.08546 1.44502 1.46593 1.52591 1.54448 2.14324 2.43899 2.57538 3.18007 3.34959 3.85897 3.91462 4.29535 4.33057 4.39468 4.50435 4.59821 4.75840 4.84694 4.97673 5.07465 5.13471 5.17924 5.46315 5.53536 5.68070 5.72736 6.10490 6.21780 6.25915 6.81279 6.87365 7.35984 7.52963 8.94187 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.005373 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.806332 B = 5209.581450 C = 5483.877782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.262 1.262 12 N -0.592 5.592 13 C 0.077 3.923 14 C 0.573 3.427 15 O -0.592 6.592 16 C -0.279 4.279 17 C 0.095 3.905 18 N -0.282 5.282 19 N -0.348 5.348 20 C 0.080 3.920 21 C 0.165 3.835 22 Cl 0.021 6.979 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.020 0.980 26 H 0.264 0.736 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -8.546 -15.490 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.187 1.187 12 N -0.321 5.321 13 C -0.065 4.065 14 C 0.361 3.639 15 O -0.474 6.474 16 C -0.296 4.296 17 C -0.090 4.090 18 N -0.103 5.103 19 N -0.131 5.131 20 C -0.059 4.059 21 C 0.006 3.994 22 Cl 0.049 6.951 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.243 0.757 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.839 -8.557 -16.301 20.010 hybrid contribution 0.267 0.773 1.773 1.953 sum 8.106 -7.784 -14.528 18.367 Atomic orbital electron populations 1.21866 0.96928 1.00237 0.99940 1.18554 0.91768 0.92232 0.81200 0.97128 1.21539 1.31871 1.13069 0.91096 0.92174 1.25695 0.95086 0.95632 1.01866 1.70019 1.37254 1.23848 1.24412 0.85543 0.78318 0.79059 0.78288 1.20450 1.20958 1.18671 1.48004 1.48859 1.13254 1.22003 1.22063 1.00788 0.80738 1.02948 1.17620 0.78592 0.85832 0.81864 1.90712 1.62503 1.17044 1.77119 1.19961 0.97165 1.07446 1.04993 1.24571 1.00634 0.92945 0.90882 1.77263 0.93190 1.16904 1.22965 1.48836 1.16029 1.24727 1.23474 1.22513 0.82902 1.07065 0.93399 1.22014 0.93163 0.91952 0.92260 1.98437 1.55196 1.52264 1.89218 0.91447 0.93247 0.96070 0.92681 0.90486 0.90396 0.90868 0.75715 0.88071 0.87765 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.97 71.98 0.65 -5.70 16 2 C 0.26 13.91 2.63 44.25 0.12 14.03 16 3 H 0.01 0.67 6.91 -2.39 -0.02 0.66 16 4 C -0.54 -29.33 7.95 25.60 0.20 -29.12 16 5 H 0.06 3.19 7.42 -2.91 -0.02 3.17 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 8 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 12 N -0.59 -25.73 2.75 -830.83 -2.29 -28.02 16 13 C 0.08 2.45 7.93 127.77 1.01 3.46 16 14 C 0.57 25.26 7.52 86.63 0.65 25.91 16 15 O -0.59 -31.11 15.75 -4.09 -0.06 -31.18 16 16 C -0.28 -9.58 5.42 -20.12 -0.11 -9.69 16 17 C 0.10 2.52 9.70 85.67 0.83 3.35 16 18 N -0.28 -7.11 12.49 -56.26 -0.70 -7.81 16 19 N -0.35 -8.27 3.98 -357.41 -1.42 -9.70 16 20 C 0.08 1.02 11.28 127.77 1.44 2.46 16 21 C 0.17 5.01 7.51 84.32 0.63 5.65 16 22 Cl 0.02 0.61 27.99 -2.72 -0.08 0.54 16 23 H 0.07 3.62 6.07 -2.38 -0.01 3.61 16 24 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 27 H 0.08 1.92 7.28 -2.39 -0.02 1.91 16 28 H 0.08 2.13 5.82 -2.39 -0.01 2.12 16 29 H 0.07 2.49 7.11 -2.39 -0.02 2.47 16 30 H 0.23 4.49 6.12 -2.91 -0.02 4.47 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.07 7.78 -2.39 -0.02 1.05 16 33 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -72.49 294.28 4.73 -67.77 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.14 Total: 4.25 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.88 Total: 11.72 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.17 Total: -98.26 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.06 Total: -31.18 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: 0.61 SS G_CDS: -0.08 Total: 0.54 kcal Total: -72.49 4.73 -67.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262822670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.775 kcal (2) G-P(sol) polarization free energy of solvation -72.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds