Wall clock time and date at job start Mon Mar 30 2020 00:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00091 * 2 1 4 4 C 1.52997 * 109.46870 * 89.99907 * 3 2 1 5 5 N 1.46500 * 109.47256 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00452 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99569 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00460 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00374 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46989 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47274 * 119.99841 * 10 8 6 13 13 H 1.48502 * 109.47186 * 240.00053 * 10 8 6 14 14 C 1.34774 * 119.99739 * 180.27792 * 2 1 3 15 15 O 1.21655 * 119.99929 * 185.26096 * 14 2 1 16 16 C 1.47178 * 120.00300 * 5.27133 * 14 2 1 17 17 C 1.35096 * 122.48537 * 186.16520 * 16 14 2 18 18 S 1.76191 * 108.21592 * 179.86889 * 17 16 14 19 19 C 1.76058 * 90.15846 * 0.31979 * 18 17 16 20 20 O 1.35493 * 125.17691 * 179.83595 * 19 18 17 21 21 N 1.29247 * 109.64005 * 359.80810 * 19 18 17 22 22 H 1.09005 * 109.47443 * 95.42246 * 1 2 3 23 23 H 1.09005 * 109.47179 * 215.42016 * 1 2 3 24 24 H 1.08998 * 109.47040 * 335.42092 * 1 2 3 25 25 H 1.08995 * 109.47491 * 209.99996 * 3 2 1 26 26 H 1.08998 * 109.46922 * 330.00277 * 3 2 1 27 27 H 1.09000 * 109.47583 * 300.00374 * 4 3 2 28 28 H 1.09007 * 109.46909 * 60.00603 * 4 3 2 29 29 H 0.97001 * 120.00025 * 359.97438 * 5 4 3 30 30 H 0.96997 * 120.00273 * 180.02562 * 9 8 6 31 31 H 1.07996 * 125.89177 * 359.95334 * 17 16 14 32 32 H 0.96706 * 113.99712 * 269.97303 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1844 2.9793 1.4426 6 6 3.5271 3.5721 2.6285 7 1 3.2574 3.1042 3.5638 8 6 4.2202 4.7748 2.6286 9 7 4.5485 5.3452 1.4887 10 14 4.6871 5.5837 4.2463 11 1 4.2050 4.7477 5.3750 12 1 6.1639 5.7180 4.3246 13 1 4.0629 6.9288 4.3254 14 6 2.1388 -1.1672 -0.0057 15 8 3.3515 -1.1699 0.0909 16 6 1.4076 -2.4385 -0.1289 17 6 2.0165 -3.6394 -0.0186 18 16 0.7981 -4.8956 -0.2230 19 6 -0.4397 -3.6646 -0.4519 20 8 -1.7516 -3.9106 -0.6846 21 7 0.0936 -2.4906 -0.3636 22 1 -0.3634 -0.0971 -1.0231 23 1 -0.3634 -0.8375 0.5956 24 1 -0.3633 0.9345 0.4274 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0283 -0.5138 27 1 1.5001 1.8406 1.9564 28 1 3.0416 0.9506 1.9563 29 1 3.4270 3.3994 0.6026 30 1 5.0332 6.1855 1.4887 31 1 3.0684 -3.8015 0.1648 32 1 -1.9772 -3.9872 -1.6219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266810515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:15 Heat of formation + Delta-G solvation = 8.964093 kcal Electronic energy + Delta-G solvation = -18030.125524 eV Core-core repulsion = 14926.733938 eV Total energy + Delta-G solvation = -3103.391586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75108 -39.09513 -37.45176 -35.93861 -34.26598 -31.38435 -30.32038 -28.43279 -26.55008 -25.52256 -23.71863 -22.24885 -21.12908 -19.92387 -18.95706 -18.16238 -17.09206 -16.54417 -16.24886 -15.56573 -15.48877 -14.66005 -14.48687 -13.96246 -13.68727 -13.38421 -13.07140 -12.80929 -12.78455 -12.56213 -12.31820 -11.86992 -11.22698 -10.97189 -10.85436 -10.65871 -10.20310 -10.03801 -9.96828 -9.76685 -9.64967 -9.22811 -8.83551 -8.44010 -6.88763 -5.72247 -3.01235 0.05318 0.57809 1.09222 1.64843 2.93244 3.15654 3.33471 3.47260 3.52772 3.55304 4.31450 4.65146 4.81264 4.87165 5.30422 5.38709 5.55732 5.63696 5.69829 5.91207 6.03491 6.08503 6.17138 6.59246 6.62498 6.77610 6.93620 7.01713 7.48684 7.75183 8.18348 8.46368 9.57320 10.13537 10.48917 11.50836 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.003392 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.266492 B = 8252.555017 C = 8453.815972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.592 5.592 3 C 0.108 3.892 4 C 0.142 3.858 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.584 3.416 15 O -0.524 6.524 16 C 0.030 3.970 17 C -0.163 4.163 18 S 0.096 5.904 19 C 0.251 3.749 20 O -0.431 6.431 21 N -0.451 5.451 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.019 0.981 28 H 0.025 0.975 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.196 0.804 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 -22.182 -8.082 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.324 5.324 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.367 4.367 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.368 3.632 15 O -0.401 6.401 16 C -0.101 4.101 17 C -0.304 4.304 18 S 0.343 5.657 19 C -0.069 4.069 20 O -0.237 6.237 21 N -0.178 5.178 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.217 0.783 30 H 0.064 0.936 31 H 0.213 0.787 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -12.591 -22.775 -7.320 27.034 hybrid contribution 0.554 1.323 0.170 1.445 sum -12.037 -21.452 -7.150 25.616 Atomic orbital electron populations 1.22026 0.78299 1.02852 1.02239 1.47632 1.07789 1.05629 1.71318 1.21793 0.97369 0.82855 0.99396 1.20918 0.95225 0.89429 0.93066 1.42218 1.67113 1.21596 1.06610 1.19264 1.29211 1.02256 0.86000 0.91131 1.24747 1.01339 0.98044 0.96938 1.69674 1.45186 1.19527 1.23884 0.86087 0.77896 0.79126 0.82925 1.20555 1.21821 1.21864 1.17108 0.86292 0.82103 0.77722 1.90879 1.12717 1.86411 1.50048 1.20082 0.87662 0.95395 1.06967 1.27162 1.04976 0.93310 1.04974 1.85334 1.00622 1.11798 1.67920 1.25220 0.89227 0.88723 1.03740 1.84871 1.16261 1.90445 1.32172 1.67212 1.10413 1.23733 1.16437 0.92519 0.89740 0.91392 0.89636 0.90108 0.96306 0.95742 0.78258 0.93562 0.78652 0.73301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 9.17 59.85 0.55 1.67 16 2 N -0.59 -9.37 2.87 -182.94 -0.53 -9.90 16 3 C 0.11 1.96 5.46 -4.04 -0.02 1.93 16 4 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 5 N -0.73 -19.57 5.60 -59.91 -0.34 -19.91 16 6 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 10 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 C 0.58 9.57 7.63 -12.63 -0.10 9.48 16 15 O -0.52 -10.28 16.31 5.23 0.09 -10.19 16 16 C 0.03 0.39 6.41 -84.60 -0.54 -0.15 16 17 C -0.16 -1.69 10.84 29.62 0.32 -1.37 16 18 S 0.10 0.72 23.42 -107.50 -2.52 -1.80 16 19 C 0.25 2.19 8.88 51.67 0.46 2.65 16 20 O -0.43 -2.70 13.64 -18.17 -0.25 -2.95 16 21 N -0.45 -5.10 6.80 -11.34 -0.08 -5.18 16 22 H 0.06 0.64 8.05 -51.93 -0.42 0.23 16 23 H 0.08 1.07 5.85 -51.93 -0.30 0.76 16 24 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 25 H 0.09 1.66 7.50 -51.93 -0.39 1.27 16 26 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 30 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.20 1.83 8.02 -52.49 -0.42 1.41 16 32 H 0.41 0.36 9.06 45.56 0.41 0.78 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -35.64 297.70 -5.70 -41.34 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.66 Total: 4.61 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 0.39 Total: 9.71 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.21 Total: -63.24 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.16 Total: -13.14 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.52 Total: -1.80 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.64 -5.70 -41.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266810515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.299 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds