Wall clock time and date at job start Mon Mar 30 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00091 * 2 1 4 4 C 1.52997 * 109.46870 * 89.99907 * 3 2 1 5 5 N 1.46500 * 109.47256 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00452 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99569 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00460 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00374 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46989 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47274 * 119.99841 * 10 8 6 13 13 H 1.48502 * 109.47186 * 240.00053 * 10 8 6 14 14 C 1.34774 * 119.99739 * 180.27792 * 2 1 3 15 15 O 1.21655 * 119.99929 * 185.26096 * 14 2 1 16 16 C 1.47178 * 120.00300 * 5.27133 * 14 2 1 17 17 C 1.35096 * 122.48537 * 186.16520 * 16 14 2 18 18 S 1.76191 * 108.21592 * 179.86889 * 17 16 14 19 19 C 1.76058 * 90.15846 * 0.31979 * 18 17 16 20 20 O 1.35493 * 125.17691 * 179.83595 * 19 18 17 21 21 N 1.29247 * 109.64005 * 359.80810 * 19 18 17 22 22 H 1.09005 * 109.47443 * 95.42246 * 1 2 3 23 23 H 1.09005 * 109.47179 * 215.42016 * 1 2 3 24 24 H 1.08998 * 109.47040 * 335.42092 * 1 2 3 25 25 H 1.08995 * 109.47491 * 209.99996 * 3 2 1 26 26 H 1.08998 * 109.46922 * 330.00277 * 3 2 1 27 27 H 1.09000 * 109.47583 * 300.00374 * 4 3 2 28 28 H 1.09007 * 109.46909 * 60.00603 * 4 3 2 29 29 H 0.97001 * 120.00025 * 359.97438 * 5 4 3 30 30 H 0.96997 * 120.00273 * 180.02562 * 9 8 6 31 31 H 1.07996 * 125.89177 * 359.95334 * 17 16 14 32 32 H 0.96706 * 113.99712 * 269.97303 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1844 2.9793 1.4426 6 6 3.5271 3.5721 2.6285 7 1 3.2574 3.1042 3.5638 8 6 4.2202 4.7748 2.6286 9 7 4.5485 5.3452 1.4887 10 14 4.6871 5.5837 4.2463 11 1 4.2050 4.7477 5.3750 12 1 6.1639 5.7180 4.3246 13 1 4.0629 6.9288 4.3254 14 6 2.1388 -1.1672 -0.0057 15 8 3.3515 -1.1699 0.0909 16 6 1.4076 -2.4385 -0.1289 17 6 2.0165 -3.6394 -0.0186 18 16 0.7981 -4.8956 -0.2230 19 6 -0.4397 -3.6646 -0.4519 20 8 -1.7516 -3.9106 -0.6846 21 7 0.0936 -2.4906 -0.3636 22 1 -0.3634 -0.0971 -1.0231 23 1 -0.3634 -0.8375 0.5956 24 1 -0.3633 0.9345 0.4274 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0283 -0.5138 27 1 1.5001 1.8406 1.9564 28 1 3.0416 0.9506 1.9563 29 1 3.4270 3.3994 0.6026 30 1 5.0332 6.1855 1.4887 31 1 3.0684 -3.8015 0.1648 32 1 -1.9772 -3.9872 -1.6219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266810515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:14 Heat of formation + Delta-G solvation = -20.626335 kcal Electronic energy + Delta-G solvation = -18031.408661 eV Core-core repulsion = 14926.733938 eV Total energy + Delta-G solvation = -3104.674723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73494 -40.04761 -38.14224 -37.44896 -36.10313 -33.40684 -31.19224 -30.10125 -27.65074 -26.82203 -25.31467 -23.67461 -22.51087 -20.72552 -19.88729 -19.30085 -18.92199 -17.57691 -17.18963 -16.82223 -16.78374 -16.24747 -15.59918 -15.30531 -15.22254 -15.05933 -14.50744 -14.29045 -13.94109 -13.47784 -13.10959 -13.05327 -12.90876 -12.78553 -12.61750 -12.37591 -12.09832 -11.88849 -11.38251 -11.00214 -10.67730 -10.53646 -10.01129 -9.69734 -9.08170 -7.98800 -5.29904 -0.68488 -0.08494 0.33853 0.74551 1.46047 1.48028 1.58235 1.88795 2.10619 2.42716 2.55646 3.34351 3.46616 3.94784 4.02532 4.11120 4.14985 4.21038 4.40043 4.52767 4.57233 4.78618 4.97228 5.04191 5.10062 5.40999 5.49143 6.11643 6.22801 6.27594 6.42132 6.95777 7.28964 7.99371 8.26111 9.24769 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.003392 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.266492 B = 8252.555017 C = 8453.815972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.594 5.594 3 C 0.123 3.877 4 C 0.149 3.851 5 N -0.742 5.742 6 C -0.252 4.252 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.979 3.021 11 H -0.268 1.268 12 H -0.291 1.291 13 H -0.287 1.287 14 C 0.578 3.422 15 O -0.570 6.570 16 C 0.008 3.992 17 C -0.171 4.171 18 S 0.173 5.827 19 C 0.255 3.745 20 O -0.432 6.432 21 N -0.474 5.474 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.027 0.973 28 H 0.002 0.998 29 H 0.377 0.623 30 H 0.254 0.746 31 H 0.199 0.801 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 -23.792 -7.852 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.325 5.325 3 C -0.001 4.001 4 C 0.021 3.979 5 N -0.386 5.386 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.214 1.214 14 C 0.364 3.636 15 O -0.450 6.450 16 C -0.123 4.123 17 C -0.313 4.313 18 S 0.422 5.578 19 C -0.065 4.065 20 O -0.243 6.243 21 N -0.201 5.201 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.045 0.955 28 H 0.020 0.980 29 H 0.209 0.791 30 H 0.063 0.937 31 H 0.216 0.784 32 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -14.335 -24.438 -7.112 29.211 hybrid contribution 0.974 1.643 0.058 1.911 sum -13.360 -22.796 -7.053 27.347 Atomic orbital electron populations 1.22151 0.76124 1.03237 1.03407 1.47711 1.08992 1.04705 1.71049 1.21455 0.97452 0.84595 0.96567 1.20936 0.94300 0.86975 0.95672 1.42381 1.67596 1.22891 1.05699 1.19625 1.29186 1.02647 0.86893 0.90985 1.25631 1.01556 0.98723 1.00563 1.69824 1.45974 1.19870 1.26066 0.85001 0.77231 0.78058 0.78994 1.19227 1.21790 1.21352 1.17667 0.86068 0.83344 0.76527 1.90838 1.14713 1.87271 1.52152 1.19548 0.88595 0.94188 1.09986 1.27387 1.06173 0.94108 1.03620 1.85118 0.97851 1.08848 1.65987 1.25330 0.90104 0.88757 1.02314 1.84840 1.14729 1.90106 1.34592 1.67098 1.09655 1.25424 1.17937 0.90922 0.89378 0.90927 0.91472 0.88225 0.95468 0.97985 0.79112 0.93717 0.78442 0.70390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.24 9.17 127.77 1.17 3.41 16 2 N -0.59 -18.90 2.87 -850.94 -2.44 -21.35 16 3 C 0.12 4.52 5.46 86.38 0.47 4.99 16 4 C 0.15 6.72 6.58 86.38 0.57 7.29 16 5 N -0.74 -40.60 5.60 -343.45 -1.92 -42.53 16 6 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 9 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 10 Si 0.98 47.53 29.55 68.60 2.03 49.55 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 C 0.58 19.37 7.63 86.59 0.66 20.03 16 15 O -0.57 -23.39 16.31 -4.21 -0.07 -23.46 16 16 C 0.01 0.21 6.41 40.50 0.26 0.47 16 17 C -0.17 -3.36 10.84 67.10 0.73 -2.64 16 18 S 0.17 2.11 23.42 -56.49 -1.32 0.78 16 19 C 0.25 3.76 8.88 130.62 1.16 4.92 16 20 O -0.43 -4.00 13.64 -87.94 -1.20 -5.20 16 21 N -0.47 -9.95 6.80 -304.24 -2.07 -12.02 16 22 H 0.07 1.53 8.05 -2.38 -0.02 1.51 16 23 H 0.09 2.12 5.85 -2.38 -0.01 2.10 16 24 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 25 H 0.07 2.73 7.50 -2.39 -0.02 2.71 16 26 H 0.10 3.27 8.07 -2.39 -0.02 3.26 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.38 21.37 7.67 -92.71 -0.71 20.66 16 30 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.20 3.65 8.02 -2.91 -0.02 3.63 16 32 H 0.43 -0.78 9.06 -74.05 -0.67 -1.45 16 Total: -1.00 -77.40 297.70 -0.60 -78.00 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -0.21 Total: 16.09 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 6.33 Total: 20.55 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -6.15 Total: -136.32 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.27 Total: -28.65 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.32 Total: 0.78 kcal Total: -77.40 -0.60 -78.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266810515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.376 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds