Wall clock time and date at job start Mon Mar 30 2020 00:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13611 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47216 * 5.04628 * 3 2 1 5 5 C 1.36923 * 119.99535 * 262.00014 * 4 3 2 6 6 H 1.07999 * 119.99962 * 136.97489 * 5 4 3 7 7 C 1.38972 * 119.99754 * 316.96786 * 5 4 3 8 8 N 1.31435 * 119.99571 * 148.44935 * 7 5 4 9 9 Si 1.86793 * 120.00259 * 328.45088 * 7 5 4 10 10 H 1.48501 * 109.47225 * 86.33810 * 9 7 5 11 11 H 1.48502 * 109.47041 * 206.33338 * 9 7 5 12 12 H 1.48498 * 109.47574 * 326.33391 * 9 7 5 13 13 C 1.34777 * 120.00493 * 82.00086 * 4 3 2 14 14 O 1.21803 * 119.99870 * 184.30178 * 13 4 3 15 15 C 1.41804 * 119.99886 * 4.29825 * 13 4 3 16 16 C 1.38845 * 126.77296 * 340.62603 * 15 13 4 17 17 N 1.32252 * 108.16977 * 180.02562 * 16 15 13 18 18 C 1.33155 * 109.73063 * 0.02562 * 17 16 15 19 19 C 1.40605 * 132.27929 * 180.02562 * 18 17 16 20 20 C 1.36333 * 119.22562 * 179.97438 * 19 18 17 21 21 C 1.39876 * 120.12243 * 0.02562 * 20 19 18 22 22 N 1.30800 * 120.77682 * 359.97438 * 21 20 19 23 23 N 1.36678 * 108.64611 * 359.97438 * 18 17 16 24 24 H 1.08996 * 109.47308 * 245.03902 * 3 2 1 25 25 H 1.09001 * 109.47121 * 125.04520 * 3 2 1 26 26 H 0.96991 * 119.99860 * 179.97438 * 8 7 5 27 27 H 1.07998 * 125.91188 * 359.97438 * 16 15 13 28 28 H 1.08001 * 120.38798 * 0.25624 * 19 18 17 29 29 H 1.08000 * 119.93508 * 180.02562 * 20 19 18 30 30 H 1.07996 * 119.60814 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3749 -0.1215 5 6 3.4811 -2.0661 0.9963 6 1 3.1896 -3.0987 1.1194 7 6 4.2461 -1.4389 1.9724 8 7 4.1165 -1.7869 3.2332 9 14 5.4584 -0.1013 1.4926 10 1 4.7578 1.2072 1.4430 11 1 6.5509 -0.0400 2.4966 12 1 6.0304 -0.4075 0.1568 13 6 3.1688 -1.9601 -1.3334 14 8 3.5005 -3.1284 -1.4269 15 6 2.8582 -1.2157 -2.4997 16 6 2.1256 -0.0380 -2.5635 17 7 2.0594 0.3384 -3.8296 18 6 2.7118 -0.5358 -4.5932 19 6 2.9375 -0.5971 -5.9797 20 6 3.6591 -1.6344 -6.4914 21 6 4.1658 -2.6235 -5.6420 22 7 3.9573 -2.5689 -4.3519 23 7 3.2229 -1.5189 -3.7930 24 1 2.9712 0.4345 0.9316 25 1 2.9711 0.5909 -0.8414 26 1 4.6506 -1.3494 3.9144 27 1 1.6854 0.4804 -1.7246 28 1 2.5478 0.1711 -6.6311 29 1 3.8397 -1.6926 -7.5546 30 1 4.7359 -3.4418 -6.0564 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292650433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:46 Heat of formation + Delta-G solvation = 139.502076 kcal Electronic energy + Delta-G solvation = -20148.941804 eV Core-core repulsion = 16948.059569 eV Total energy + Delta-G solvation = -3200.882234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.80548 -40.90721 -38.97953 -38.16600 -36.57703 -34.65241 -34.36933 -32.36202 -31.17523 -29.60091 -27.46163 -25.61289 -24.56906 -23.34890 -21.69175 -20.40174 -19.08984 -18.56270 -18.38370 -18.10354 -17.28480 -17.19975 -16.59646 -16.25803 -15.82238 -15.58902 -14.85588 -14.67518 -14.43413 -14.11249 -13.93332 -13.81289 -13.78551 -13.61322 -13.13421 -12.84119 -12.38088 -12.26900 -12.14359 -11.97306 -11.22328 -11.07340 -10.73392 -10.65161 -10.00442 -9.41157 -8.62146 -6.23491 -0.55872 -0.28346 0.62756 1.13266 1.23593 1.35172 1.40318 1.53182 1.53945 2.10239 2.18536 2.25681 2.54711 2.68586 2.90532 3.04428 3.22919 3.64491 3.70342 3.76222 3.97850 4.13773 4.24324 4.26502 4.50070 4.83566 4.86840 5.02492 5.33354 5.41632 5.99164 6.27224 6.30986 6.39629 6.47332 6.76130 7.03788 7.57444 8.53696 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.006901 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.384192 B = 4056.116696 C = 4563.371262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.210 3.790 3 C 0.165 3.835 4 N -0.450 5.450 5 C -0.355 4.355 6 H 0.049 0.951 7 C 0.042 3.958 8 N -0.873 5.873 9 Si 0.911 3.089 10 H -0.209 1.209 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.537 3.463 14 O -0.585 6.585 15 C -0.080 4.080 16 C 0.051 3.949 17 N -0.478 5.478 18 C 0.175 3.825 19 C -0.028 4.028 20 C -0.133 4.133 21 C 0.133 3.867 22 N -0.300 5.300 23 N -0.254 5.254 24 H 0.139 0.861 25 H 0.152 0.848 26 H 0.288 0.712 27 H 0.210 0.790 28 H 0.202 0.798 29 H 0.221 0.779 30 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 8.127 -20.267 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.108 4.108 3 C 0.039 3.961 4 N -0.172 5.172 5 C -0.482 4.482 6 H 0.067 0.933 7 C -0.166 4.166 8 N -0.507 5.507 9 Si 0.731 3.269 10 H -0.132 1.132 11 H -0.197 1.197 12 H -0.198 1.198 13 C 0.329 3.671 14 O -0.467 6.467 15 C -0.201 4.201 16 C -0.110 4.110 17 N -0.198 5.198 18 C -0.072 4.072 19 C -0.055 4.055 20 C -0.159 4.159 21 C -0.058 4.058 22 N -0.111 5.111 23 N -0.022 5.022 24 H 0.156 0.844 25 H 0.169 0.831 26 H 0.099 0.901 27 H 0.226 0.774 28 H 0.219 0.781 29 H 0.238 0.762 30 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.661 7.599 -19.487 20.982 hybrid contribution 1.010 -0.514 0.472 1.227 sum 2.671 7.085 -19.015 20.467 Atomic orbital electron populations 1.81123 1.13457 1.07860 1.09824 1.29823 0.95797 0.93105 0.92050 1.20369 0.80422 0.86901 1.08443 1.43174 1.56611 1.12645 1.04730 1.18401 1.36587 0.97813 0.95422 0.93306 1.26032 0.96804 1.00285 0.93444 1.69946 1.36597 1.43197 1.00937 0.86348 0.80446 0.81028 0.79090 1.13163 1.19705 1.19807 1.16142 0.81133 0.87142 0.82680 1.90718 1.51491 1.17881 1.86622 1.19915 1.13367 1.02536 0.84236 1.24115 0.98244 0.92581 0.96065 1.70396 1.21028 1.26385 1.01958 1.22294 1.00271 0.88652 0.95937 1.21246 0.96032 1.00700 0.87495 1.22273 0.96723 0.92113 1.04742 1.25381 0.93420 0.99945 0.87084 1.76211 1.11663 1.06037 1.17172 1.46637 1.32759 1.16238 1.06616 0.84385 0.83081 0.90133 0.77435 0.78062 0.76242 0.73695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -18.09 18.54 20.01 0.37 -17.72 16 2 C 0.21 8.09 12.62 89.44 1.13 9.22 16 3 C 0.16 6.14 4.25 84.57 0.36 6.50 16 4 N -0.45 -21.98 2.02 -655.29 -1.32 -23.31 16 5 C -0.36 -20.21 9.14 84.07 0.77 -19.44 16 6 H 0.05 3.28 7.98 -2.91 -0.02 3.26 16 7 C 0.04 2.21 4.97 84.93 0.42 2.63 16 8 N -0.87 -48.09 13.96 21.67 0.30 -47.79 16 9 Si 0.91 37.22 26.32 68.60 1.81 39.03 16 10 H -0.21 -6.72 6.59 99.48 0.66 -6.07 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.54 27.51 7.34 85.12 0.62 28.13 16 14 O -0.58 -34.95 16.76 -4.68 -0.08 -35.03 16 15 C -0.08 -3.45 6.65 39.24 0.26 -3.19 16 16 C 0.05 1.85 9.14 84.78 0.77 2.63 16 17 N -0.48 -15.93 11.25 -192.53 -2.17 -18.09 16 18 C 0.17 5.27 7.85 133.97 1.05 6.32 16 19 C -0.03 -0.45 10.11 22.40 0.23 -0.23 16 20 C -0.13 -1.33 10.03 22.22 0.22 -1.11 16 21 C 0.13 2.26 11.30 85.24 0.96 3.23 16 22 N -0.30 -10.06 11.69 -57.04 -0.67 -10.72 16 23 N -0.25 -9.59 4.05 -184.94 -0.75 -10.34 16 24 H 0.14 4.79 5.00 -2.39 -0.01 4.78 16 25 H 0.15 4.55 5.16 -2.39 -0.01 4.54 16 26 H 0.29 14.31 8.31 -92.72 -0.77 13.54 16 27 H 0.21 6.88 3.19 -2.91 -0.01 6.87 16 28 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.22 -0.48 8.06 -2.91 -0.02 -0.51 16 30 H 0.25 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -86.49 272.63 5.47 -81.01 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.17 Total: 8.26 kcal Atomic # 6 Polarization: 27.89 SS G_CDS: 6.80 Total: 34.70 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -4.23 Total: -127.97 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.08 Total: -35.03 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.81 Total: 39.03 kcal Total: -86.49 5.47 -81.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292650433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.515 kcal (2) G-P(sol) polarization free energy of solvation -86.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds