Wall clock time and date at job start Mon Mar 30 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35467 * 126.43025 * 2 1 4 4 Cl 1.73596 * 127.24003 * 359.95904 * 3 2 1 5 5 C 1.41553 * 105.52075 * 180.02562 * 3 2 1 6 6 C 1.47661 * 126.45954 * 179.97438 * 5 3 2 7 7 O 1.21568 * 120.00388 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99742 * 179.97438 * 6 5 3 9 9 C 1.46496 * 119.99965 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.50699 * 109.47248 * 205.00258 * 9 8 6 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99908 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00364 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99946 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.46997 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47438 * 119.99776 * 16 14 12 19 19 H 1.48494 * 109.47197 * 239.99736 * 16 14 12 20 20 N 1.31822 * 107.07283 * 0.22311 * 5 3 2 21 21 N 1.28471 * 110.14470 * 359.61722 * 20 5 3 22 22 C 1.46494 * 124.94070 * 180.12281 * 21 20 5 23 23 H 1.09001 * 109.47466 * 89.97893 * 1 2 3 24 24 H 1.08997 * 109.47196 * 209.98137 * 1 2 3 25 25 H 1.09004 * 109.47328 * 329.97721 * 1 2 3 26 26 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 27 27 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 28 28 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 29 29 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 30 30 H 0.96999 * 120.00396 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.47364 * 270.31504 * 22 21 20 32 32 H 1.09005 * 109.46971 * 30.31383 * 22 21 20 33 33 H 1.08998 * 109.47561 * 150.31248 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3114 1.0899 0.0000 4 17 1.8233 2.7559 -0.0010 5 6 3.6337 0.5847 -0.0006 6 6 4.8773 1.3810 -0.0014 7 8 4.8216 2.5954 -0.0011 8 7 6.0742 0.7613 -0.0014 9 6 7.3079 1.5512 -0.0027 10 1 7.1598 2.4556 -0.5928 11 6 7.6704 1.9333 1.4339 12 6 8.4250 0.7371 -0.6030 13 1 8.2349 -0.2680 -0.9493 14 6 9.6898 1.2755 -0.7101 15 7 9.9213 2.4996 -0.2889 16 14 11.0744 0.2666 -1.4549 17 1 10.5575 -1.0689 -1.8484 18 1 11.6066 0.9645 -2.6528 19 1 12.1599 0.1017 -0.4551 20 7 3.5455 -0.7305 -0.0058 21 7 2.3125 -1.0913 -0.0005 22 6 1.8445 -2.4794 -0.0013 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3634 0.8898 0.5142 26 1 6.1187 -0.2077 -0.0013 27 1 6.8625 2.5222 1.8681 28 1 7.8186 1.0289 2.0239 29 1 8.5887 2.5206 1.4329 30 1 10.8111 2.8785 -0.3646 31 1 1.7286 -2.8232 -1.0292 32 1 2.5717 -3.1084 0.5124 33 1 0.8850 -2.5398 0.5124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293253417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:52 Heat of formation + Delta-G solvation = 6.727820 kcal Electronic energy + Delta-G solvation = -18426.825063 eV Core-core repulsion = 15321.292799 eV Total energy + Delta-G solvation = -3105.532264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.78084 -40.31219 -37.52491 -36.70860 -34.74146 -34.15807 -33.46656 -31.00733 -28.43437 -27.82136 -27.33561 -24.62185 -22.54114 -21.95143 -20.75570 -18.95668 -18.01585 -17.56449 -17.32924 -17.06940 -16.07352 -15.77419 -15.62588 -14.97474 -14.48199 -14.40696 -14.15722 -13.81926 -13.61483 -13.48172 -13.09041 -12.98501 -12.87041 -12.79105 -12.74979 -12.42373 -12.28777 -12.12572 -11.67965 -11.11197 -10.93163 -10.60584 -10.22827 -9.80252 -9.68675 -8.17475 -6.35052 0.43654 0.80300 0.97010 1.44775 1.45079 1.58033 1.72776 2.32829 2.37866 2.55485 3.12666 3.37551 3.56837 3.87578 4.15442 4.35323 4.39611 4.65526 4.70381 4.75347 4.81552 4.89436 4.92492 5.07306 5.09725 5.40979 5.58099 5.65944 5.72521 5.88504 6.07783 6.61955 6.70756 6.95252 7.28837 7.45406 8.89461 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.004774 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.660303 B = 5863.809728 C = 6637.356221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.043 3.957 3 C -0.137 4.137 4 Cl -0.021 7.021 5 C -0.025 4.025 6 C 0.580 3.420 7 O -0.570 6.570 8 N -0.691 5.691 9 C 0.270 3.730 10 H 0.004 0.996 11 C -0.132 4.132 12 C -0.548 4.548 13 H 0.069 0.931 14 C 0.016 3.984 15 N -0.916 5.916 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.276 1.276 20 N -0.259 5.259 21 N -0.269 5.269 22 C 0.072 3.928 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.404 0.596 27 H 0.013 0.987 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.267 0.733 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.276 -12.353 1.032 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.175 4.175 4 Cl 0.007 6.993 5 C -0.184 4.184 6 C 0.364 3.636 7 O -0.448 6.448 8 N -0.340 5.340 9 C 0.167 3.833 10 H 0.022 0.978 11 C -0.191 4.191 12 C -0.586 4.586 13 H 0.088 0.912 14 C -0.184 4.184 15 N -0.554 5.554 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.201 1.201 20 N -0.096 5.096 21 N -0.059 5.059 22 C -0.065 4.065 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.239 0.761 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.563 -12.333 1.047 24.001 hybrid contribution 0.716 0.575 -0.305 0.968 sum -19.847 -11.758 0.742 23.080 Atomic orbital electron populations 1.20633 0.82017 1.05999 1.05345 1.21715 0.97179 0.84455 1.04996 1.20789 0.92083 0.88236 1.16362 1.98323 1.90596 1.13076 1.97306 1.21763 0.94142 0.90383 1.12145 1.17344 0.82705 0.86557 0.76997 1.90742 1.87227 1.14259 1.52546 1.46181 1.05420 1.10820 1.71556 1.18457 0.80364 0.90814 0.93618 0.97810 1.21892 1.00472 0.99548 0.97193 1.21519 0.94195 1.01176 1.41672 0.91245 1.25803 1.01120 0.96109 0.95389 1.70054 1.22798 1.15770 1.46807 0.85248 0.78193 0.78721 0.77858 1.18599 1.20730 1.20141 1.73596 1.03721 1.12762 1.19527 1.45909 1.01544 1.09277 1.49142 1.22794 1.03520 0.73476 1.06723 0.88068 0.87036 0.89309 0.76140 0.96835 0.94261 0.91017 0.92416 0.87443 0.87626 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.99 71.24 0.71 -0.14 16 2 C 0.04 0.95 6.94 41.33 0.29 1.24 16 3 C -0.14 -4.46 6.79 22.45 0.15 -4.31 16 4 Cl -0.02 -0.70 27.92 -2.72 -0.08 -0.78 16 5 C -0.02 -0.96 7.13 42.45 0.30 -0.65 16 6 C 0.58 27.59 7.79 86.73 0.68 28.27 16 7 O -0.57 -30.79 15.54 -3.93 -0.06 -30.85 16 8 N -0.69 -33.27 5.07 -449.16 -2.28 -35.55 16 9 C 0.27 15.09 2.56 44.25 0.11 15.20 16 10 H 0.00 0.26 7.58 -2.39 -0.02 0.24 16 11 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 12 C -0.55 -30.63 8.73 25.60 0.22 -30.41 16 13 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 14 C 0.02 0.88 5.30 84.66 0.45 1.33 16 15 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 16 Si 0.98 43.29 29.54 68.60 2.03 45.31 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 N -0.26 -8.24 11.66 -48.17 -0.56 -8.80 16 21 N -0.27 -5.83 3.72 -355.39 -1.32 -7.15 16 22 C 0.07 0.59 11.12 127.77 1.42 2.01 16 23 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.11 0.34 7.03 -2.39 -0.02 0.32 16 25 H 0.09 0.99 8.03 -2.39 -0.02 0.97 16 26 H 0.40 17.54 8.26 -92.71 -0.77 16.78 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 30 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.14 0.05 6.98 -2.39 -0.02 0.04 16 Total: -1.00 -77.21 302.38 3.36 -73.86 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.38 Total: 11.56 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.00 Total: 6.06 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.92 Total: -105.16 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -77.21 3.36 -73.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293253417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.586 kcal (2) G-P(sol) polarization free energy of solvation -77.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds