Wall clock time and date at job start Mon Mar 30 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35467 * 126.42991 * 2 1 4 4 Cl 1.73601 * 127.23969 * 359.97438 * 3 2 1 5 5 C 1.41553 * 105.52183 * 180.02562 * 3 2 1 6 6 C 1.47666 * 126.45882 * 179.97438 * 5 3 2 7 7 O 1.21569 * 120.00388 * 0.02562 * 6 5 3 8 8 N 1.34775 * 119.99441 * 179.97438 * 6 5 3 9 9 C 1.46506 * 119.99693 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46660 * 35.00912 * 9 8 6 11 11 C 1.52997 * 109.47289 * 275.00198 * 9 8 6 12 12 C 1.50708 * 109.46796 * 155.00272 * 9 8 6 13 13 H 1.07995 * 119.99755 * 0.02562 * 12 9 8 14 14 C 1.37873 * 119.99729 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99909 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46950 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47111 * 120.00368 * 16 14 12 19 19 H 1.48500 * 109.47074 * 240.00161 * 16 14 12 20 20 N 1.31822 * 107.07599 * 0.23804 * 5 3 2 21 21 N 1.28476 * 110.13501 * 359.59174 * 20 5 3 22 22 C 1.46501 * 124.92988 * 180.13166 * 21 20 5 23 23 H 1.09000 * 109.47233 * 89.98198 * 1 2 3 24 24 H 1.09001 * 109.46982 * 209.97957 * 1 2 3 25 25 H 1.09007 * 109.47067 * 329.97866 * 1 2 3 26 26 H 0.97000 * 120.00190 * 0.02562 * 8 6 5 27 27 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 28 28 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 29 29 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 30 30 H 0.97002 * 119.99804 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.47198 * 270.32737 * 22 21 20 32 32 H 1.08997 * 109.47674 * 30.33769 * 22 21 20 33 33 H 1.09006 * 109.46600 * 150.33325 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8233 2.7559 -0.0006 5 6 3.6338 0.5848 -0.0006 6 6 4.8773 1.3811 -0.0014 7 8 4.8216 2.5955 -0.0011 8 7 6.0742 0.7614 -0.0014 9 6 7.3080 1.5514 -0.0027 10 1 7.1603 2.4567 0.5861 11 6 7.6690 1.9310 -1.4402 12 6 8.4257 0.7383 0.5979 13 1 8.2360 -0.2665 0.9454 14 6 9.6903 1.2772 0.7038 15 7 9.9211 2.5010 0.2810 16 14 11.0756 0.2696 1.4489 17 1 10.5594 -1.0656 1.8442 18 1 12.1607 0.1040 0.4488 19 1 11.6081 0.9691 2.6458 20 7 3.5457 -0.7305 -0.0062 21 7 2.3126 -1.0912 -0.0004 22 6 1.8447 -2.4794 -0.0013 23 1 -0.3634 0.0003 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 6.1187 -0.2075 -0.0013 27 1 8.5867 2.5192 -1.4411 28 1 6.8606 2.5191 -1.8746 29 1 7.8167 1.0256 -2.0290 30 1 10.8109 2.8800 0.3552 31 1 1.7287 -2.8232 -1.0292 32 1 2.5718 -3.1083 0.5123 33 1 0.8851 -2.5397 0.5124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293253430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:54 Heat of formation + Delta-G solvation = 30.965265 kcal Electronic energy + Delta-G solvation = -18425.685537 eV Core-core repulsion = 15321.204287 eV Total energy + Delta-G solvation = -3104.481250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.65947 -38.48580 -36.31636 -34.69338 -33.61584 -32.58768 -32.19330 -29.07800 -27.48029 -26.84474 -25.18102 -23.17881 -21.03878 -20.45597 -19.04873 -17.44330 -16.67504 -16.55267 -15.57628 -15.10861 -14.79641 -14.17182 -13.97557 -13.69947 -13.53492 -13.18877 -12.87285 -12.73205 -12.48648 -12.30607 -11.69116 -11.61705 -11.29392 -11.03133 -10.90550 -10.66771 -10.41011 -10.24410 -10.16921 -9.14020 -9.09031 -8.95617 -8.61659 -8.48685 -7.80407 -6.05904 -4.14326 1.66781 1.99090 2.02367 2.77668 3.28448 3.35854 3.39318 4.02363 4.05546 4.33308 4.39856 4.48631 4.72658 4.81140 5.04255 5.11272 5.22605 5.26512 5.50496 5.59884 5.61597 6.17446 6.61669 6.91391 7.05983 7.22761 7.52327 7.62794 7.74769 7.86644 8.01461 8.21534 8.76130 8.85422 9.18638 9.52727 11.00309 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.004773 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.541671 B = 5864.465016 C = 6637.176995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.016 3.984 3 C -0.105 4.105 4 Cl -0.012 7.012 5 C 0.016 3.984 6 C 0.582 3.418 7 O -0.531 6.531 8 N -0.692 5.692 9 C 0.264 3.736 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.251 5.251 21 N -0.285 5.285 22 C 0.089 3.911 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.394 0.606 27 H 0.091 0.909 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 -9.288 -1.145 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.143 4.143 4 Cl 0.017 6.983 5 C -0.146 4.146 6 C 0.364 3.636 7 O -0.406 6.406 8 N -0.340 5.340 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.205 4.205 12 C -0.569 4.569 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.729 3.271 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.085 5.085 21 N -0.074 5.074 22 C -0.051 4.051 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.227 0.773 27 H 0.109 0.891 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.715 -9.226 -1.160 20.898 hybrid contribution 0.297 -0.290 0.351 0.544 sum -18.418 -9.516 -0.808 20.747 Atomic orbital electron populations 1.20358 0.86111 1.04025 1.03500 1.21032 0.95199 0.85989 1.08681 1.20542 0.92284 0.87478 1.13956 1.98340 1.90760 1.12107 1.97136 1.22393 0.95058 0.89223 1.07944 1.16857 0.81726 0.86583 0.78462 1.90788 1.86393 1.12398 1.51058 1.46419 1.05982 1.10676 1.70909 1.18816 0.78809 0.92004 0.94146 0.93074 1.22077 1.01682 0.99515 0.97271 1.21259 0.93685 1.00846 1.41103 0.91984 1.24878 0.98548 0.95052 0.95231 1.69920 1.22014 1.14126 1.46080 0.86392 0.81738 0.80119 0.78837 1.19753 1.20914 1.20901 1.73695 1.01310 1.14149 1.19376 1.45249 1.02799 1.07130 1.52212 1.22162 1.01621 0.76800 1.04506 0.90047 0.90888 0.89401 0.77280 0.89077 0.96493 0.95459 0.92682 0.89615 0.88190 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.99 36.01 0.36 -0.25 16 2 C 0.02 0.20 6.94 -81.90 -0.57 -0.37 16 3 C -0.11 -1.73 6.79 -39.31 -0.27 -2.00 16 4 Cl -0.01 -0.19 27.92 -51.86 -1.45 -1.64 16 5 C 0.02 0.30 7.13 -82.76 -0.59 -0.29 16 6 C 0.58 13.26 7.79 -12.41 -0.10 13.17 16 7 O -0.53 -13.55 15.54 5.30 0.08 -13.47 16 8 N -0.69 -16.05 5.07 -55.93 -0.28 -16.34 16 9 C 0.26 7.05 2.56 -69.08 -0.18 6.87 16 10 H 0.05 1.55 7.57 -51.93 -0.39 1.16 16 11 C -0.15 -3.81 9.26 37.16 0.34 -3.47 16 12 C -0.53 -14.59 8.73 -34.44 -0.30 -14.89 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 15 N -0.88 -25.41 11.32 55.43 0.63 -24.78 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 N -0.25 -4.12 11.66 33.42 0.39 -3.73 16 21 N -0.29 -3.52 3.72 -63.68 -0.24 -3.76 16 22 C 0.09 0.57 11.12 59.85 0.67 1.24 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.35 7.03 -51.93 -0.36 -0.02 16 25 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 26 H 0.39 8.37 8.26 -40.82 -0.34 8.04 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.32 6.98 -51.93 -0.36 -0.04 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -33.56 302.39 -5.90 -39.47 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.84 Total: 1.86 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.72 Total: 1.74 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.50 Total: -48.60 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.56 -5.90 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293253430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.430 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds