Wall clock time and date at job start Mon Mar 30 2020 00:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21284 * 119.99754 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.47192 * 179.97438 * 5 3 2 7 7 N 1.29942 * 126.28729 * 90.02832 * 6 5 3 8 8 O 1.21298 * 110.25039 * 179.97438 * 7 6 5 9 9 C 1.33641 * 109.81283 * 359.97438 * 8 7 6 10 10 C 1.50702 * 126.55216 * 180.02562 * 9 8 7 11 11 S 1.81398 * 109.46994 * 269.97440 * 10 9 8 12 12 C 1.81398 * 103.00327 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47448 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00107 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00273 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00276 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99826 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46818 * 89.99842 * 17 15 13 19 19 H 1.48493 * 109.47089 * 209.99831 * 17 15 13 20 20 H 1.48504 * 109.46844 * 330.00179 * 17 15 13 21 21 N 1.31129 * 106.89485 * 359.77221 * 9 8 7 22 22 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 23 23 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 24 24 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 26 26 H 1.09004 * 109.47043 * 299.99732 * 5 3 2 27 27 H 1.09000 * 109.46978 * 59.99653 * 5 3 2 28 28 H 1.08999 * 109.47412 * 29.97340 * 10 9 8 29 29 H 1.08997 * 109.47286 * 149.97783 * 10 9 8 30 30 H 1.08997 * 109.47509 * 300.00514 * 12 11 10 31 31 H 1.09003 * 109.46628 * 60.00259 * 12 11 10 32 32 H 0.97000 * 119.99635 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1482 2.5881 -0.0002 7 7 4.4046 3.3137 1.0468 8 8 4.7936 4.4125 0.7112 9 6 4.8237 4.4945 -0.6224 10 6 5.2473 5.6882 -1.4389 11 16 3.8050 6.7379 -1.7684 12 6 4.5044 8.0979 -2.7440 13 6 3.4121 9.0720 -3.1032 14 1 2.3986 8.8913 -2.7768 15 6 3.7066 10.1940 -3.8485 16 7 2.7535 11.0444 -4.1615 17 14 5.4595 10.5062 -4.4137 18 1 5.6720 9.8733 -5.7402 19 1 5.6922 11.9689 -4.5201 20 1 6.4078 9.9243 -3.4300 21 7 4.4195 3.3358 -1.0846 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8400 0.0041 26 1 4.0089 0.6537 0.8909 27 1 4.0096 0.6532 -0.8891 28 1 5.9939 6.2594 -0.8871 29 1 5.6736 5.3498 -2.3832 30 1 5.2694 8.6086 -2.1593 31 1 4.9495 7.6994 -3.6557 32 1 2.9607 11.8335 -4.6861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307353314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:41 Heat of formation + Delta-G solvation = 31.686448 kcal Electronic energy + Delta-G solvation = -17506.330782 eV Core-core repulsion = 14403.924511 eV Total energy + Delta-G solvation = -3102.406271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.52774 -39.90293 -36.00572 -34.89337 -33.81776 -33.08447 -30.74073 -29.48500 -28.75228 -26.76035 -23.71107 -22.73580 -21.87811 -20.70658 -18.36637 -17.64578 -17.30456 -16.93968 -16.27151 -15.95625 -15.57252 -14.79877 -14.29129 -14.22623 -14.05636 -13.67346 -13.55944 -13.26238 -12.67383 -12.57909 -12.44560 -12.38462 -12.04847 -11.61865 -11.00457 -10.87570 -10.78525 -10.30480 -10.20432 -9.85311 -9.58845 -9.48293 -9.08505 -8.74789 -6.96477 -6.20766 -4.24248 1.00447 1.90323 2.33157 2.53953 2.83931 2.92916 3.19411 3.26348 3.26661 3.44936 3.56427 3.93404 4.27743 4.42514 4.69676 4.83770 4.91581 5.07255 5.09899 5.20587 5.27557 5.44143 5.51801 5.74038 5.98831 6.01169 6.48018 6.60483 7.06795 7.35992 7.89177 8.18020 8.26120 8.81882 9.33411 10.91190 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030500 B = 0.003582 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.800229 B = 7815.119678 C = 8422.460978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.736 5.736 3 C 0.515 3.485 4 O -0.516 6.516 5 C -0.047 4.047 6 C 0.183 3.817 7 N -0.376 5.376 8 O 0.087 5.913 9 C 0.219 3.781 10 C -0.025 4.025 11 S -0.221 6.221 12 C 0.045 3.955 13 C -0.517 4.517 14 H 0.085 0.915 15 C 0.081 3.919 16 N -0.889 5.889 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.265 1.265 21 N -0.465 5.465 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.403 0.597 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 -23.361 7.772 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.299 3.701 4 O -0.390 6.390 5 C -0.088 4.088 6 C -0.091 4.091 7 N -0.082 5.082 8 O 0.027 5.973 9 C -0.002 4.002 10 C -0.174 4.174 11 S 0.004 5.996 12 C -0.103 4.103 13 C -0.556 4.556 14 H 0.103 0.897 15 C -0.124 4.124 16 N -0.526 5.526 17 Si 0.706 3.294 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.189 1.189 21 N -0.200 5.200 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.236 0.764 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.986 -23.174 8.508 24.867 hybrid contribution 2.245 0.189 -0.827 2.400 sum 5.230 -22.985 7.681 24.793 Atomic orbital electron populations 1.21564 0.79059 1.02266 1.02752 1.45669 1.08018 1.08294 1.76924 1.20256 0.89248 0.84088 0.76522 1.90832 1.69944 1.31090 1.47173 1.19822 0.92950 0.89068 1.06951 1.24745 1.01252 0.98889 0.84207 1.74547 1.17152 0.92833 1.23703 1.85291 1.60576 1.26829 1.24641 1.27720 0.95248 0.95454 0.81784 1.21762 1.02756 0.92245 1.00611 1.87455 1.12887 1.26540 1.72701 1.21543 0.99835 0.93083 0.95859 1.20411 0.95152 1.04955 1.35114 0.89720 1.24843 0.97393 0.95143 0.94973 1.69862 1.32525 1.12438 1.37776 0.86795 0.84931 0.78007 0.79717 1.19810 1.20765 1.18946 1.71842 1.17323 1.02057 1.28731 0.92108 0.91906 0.90489 0.76391 0.86077 0.85511 0.86780 0.86049 0.94122 0.94590 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.74 -5.50 5.71 -67.07 -0.38 -5.88 16 3 C 0.51 6.14 7.82 -10.99 -0.09 6.06 16 4 O -0.52 -9.25 16.03 5.55 0.09 -9.17 16 5 C -0.05 -0.45 6.33 -29.04 -0.18 -0.63 16 6 C 0.18 2.73 6.71 -156.38 -1.05 1.68 16 7 N -0.38 -6.10 12.16 30.89 0.38 -5.72 16 8 O 0.09 1.44 11.31 18.11 0.20 1.64 16 9 C 0.22 3.57 7.77 -13.06 -0.10 3.47 16 10 C -0.02 -0.38 6.57 36.01 0.24 -0.15 16 11 S -0.22 -4.67 21.64 -107.50 -2.33 -7.00 16 12 C 0.04 1.03 4.77 36.00 0.17 1.21 16 13 C -0.52 -14.58 9.68 -34.44 -0.33 -14.92 16 14 H 0.08 2.65 7.96 -52.49 -0.42 2.24 16 15 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 16 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 17 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 21 N -0.47 -7.74 11.55 -9.88 -0.11 -7.85 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.40 1.36 8.83 -40.82 -0.36 1.00 16 26 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 29 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.04 0.90 7.20 -51.93 -0.37 0.52 16 31 H 0.04 0.79 7.57 -51.92 -0.39 0.40 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -36.39 303.26 -5.95 -42.35 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.67 Total: -2.93 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.80 Total: 0.18 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.65 Total: -45.38 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.29 Total: -7.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.33 Total: -7.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.39 -5.95 -42.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.034 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds