Wall clock time and date at job start Mon Mar 30 2020 00:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21284 * 119.99754 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.47192 * 179.97438 * 5 3 2 7 7 N 1.29942 * 126.28729 * 90.02832 * 6 5 3 8 8 O 1.21298 * 110.25039 * 179.97438 * 7 6 5 9 9 C 1.33641 * 109.81283 * 359.97438 * 8 7 6 10 10 C 1.50702 * 126.55216 * 180.02562 * 9 8 7 11 11 S 1.81398 * 109.46994 * 269.97440 * 10 9 8 12 12 C 1.81398 * 103.00327 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47448 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00107 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00273 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00276 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99826 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46818 * 89.99842 * 17 15 13 19 19 H 1.48493 * 109.47089 * 209.99831 * 17 15 13 20 20 H 1.48504 * 109.46844 * 330.00179 * 17 15 13 21 21 N 1.31129 * 106.89485 * 359.77221 * 9 8 7 22 22 H 1.09000 * 109.47212 * 300.00355 * 1 2 3 23 23 H 1.09001 * 109.46577 * 60.00430 * 1 2 3 24 24 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00050 * 179.72114 * 2 1 3 26 26 H 1.09004 * 109.47043 * 299.99732 * 5 3 2 27 27 H 1.09000 * 109.46978 * 59.99653 * 5 3 2 28 28 H 1.08999 * 109.47412 * 29.97340 * 10 9 8 29 29 H 1.08997 * 109.47286 * 149.97783 * 10 9 8 30 30 H 1.08997 * 109.47509 * 300.00514 * 12 11 10 31 31 H 1.09003 * 109.46628 * 60.00259 * 12 11 10 32 32 H 0.97000 * 119.99635 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1482 2.5881 -0.0002 7 7 4.4046 3.3137 1.0468 8 8 4.7936 4.4125 0.7112 9 6 4.8237 4.4945 -0.6224 10 6 5.2473 5.6882 -1.4389 11 16 3.8050 6.7379 -1.7684 12 6 4.5044 8.0979 -2.7440 13 6 3.4121 9.0720 -3.1032 14 1 2.3986 8.8913 -2.7768 15 6 3.7066 10.1940 -3.8485 16 7 2.7535 11.0444 -4.1615 17 14 5.4595 10.5062 -4.4137 18 1 5.6720 9.8733 -5.7402 19 1 5.6922 11.9689 -4.5201 20 1 6.4078 9.9243 -3.4300 21 7 4.4195 3.3358 -1.0846 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8400 0.0041 26 1 4.0089 0.6537 0.8909 27 1 4.0096 0.6532 -0.8891 28 1 5.9939 6.2594 -0.8871 29 1 5.6736 5.3498 -2.3832 30 1 5.2694 8.6086 -2.1593 31 1 4.9495 7.6994 -3.6557 32 1 2.9607 11.8335 -4.6861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307353314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:41 Heat of formation + Delta-G solvation = 1.337225 kcal Electronic energy + Delta-G solvation = -17507.646823 eV Core-core repulsion = 14403.924511 eV Total energy + Delta-G solvation = -3103.722312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.72340 -40.82358 -37.16361 -35.74391 -35.19831 -34.97679 -31.68662 -31.45118 -30.01179 -27.48488 -25.00033 -24.58160 -23.06485 -21.61535 -19.52143 -19.11976 -18.72179 -18.21602 -17.44096 -17.12749 -16.63591 -16.19093 -15.94652 -15.40377 -15.19673 -14.92784 -14.76150 -14.32669 -14.28081 -14.08937 -13.51486 -13.12495 -13.09052 -12.94157 -12.61460 -12.42999 -12.21445 -12.12152 -11.76894 -11.35642 -11.03266 -10.86425 -10.67913 -10.24634 -8.64565 -8.35068 -6.46555 -0.31019 0.66671 1.27482 1.39451 1.42272 1.45538 1.52392 1.59459 1.84643 2.14991 2.33178 2.53848 2.87153 2.98580 3.61770 3.81430 3.99400 4.12686 4.31320 4.42125 4.44260 4.57374 4.62437 4.66429 4.79116 4.80315 4.92474 5.32227 5.33661 6.07676 6.42898 6.58191 6.97524 7.15070 7.15913 8.81258 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030500 B = 0.003582 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.800229 B = 7815.119678 C = 8422.460978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.712 5.712 3 C 0.509 3.491 4 O -0.590 6.590 5 C -0.045 4.045 6 C 0.182 3.818 7 N -0.392 5.392 8 O 0.076 5.924 9 C 0.211 3.789 10 C -0.002 4.002 11 S -0.285 6.285 12 C 0.055 3.945 13 C -0.535 4.535 14 H 0.029 0.971 15 C 0.017 3.983 16 N -0.944 5.944 17 Si 0.959 3.041 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.233 1.233 21 N -0.481 5.481 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.120 0.880 25 H 0.426 0.574 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -25.943 7.715 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.295 3.705 4 O -0.469 6.469 5 C -0.086 4.086 6 C -0.092 4.092 7 N -0.101 5.101 8 O 0.019 5.981 9 C -0.010 4.010 10 C -0.150 4.150 11 S -0.060 6.060 12 C -0.092 4.092 13 C -0.574 4.574 14 H 0.047 0.953 15 C -0.183 4.183 16 N -0.583 5.583 17 Si 0.780 3.220 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.156 1.156 21 N -0.216 5.216 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.139 0.861 25 H 0.264 0.736 26 H 0.178 0.822 27 H 0.180 0.820 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.027 -25.827 8.469 27.840 hybrid contribution 1.158 0.824 -0.739 1.602 sum 7.185 -25.004 7.730 27.140 Atomic orbital electron populations 1.21686 0.78766 1.04559 1.01090 1.45543 1.08308 1.08215 1.74492 1.20723 0.90240 0.84076 0.75483 1.90811 1.71419 1.33730 1.50988 1.20173 0.91161 0.86702 1.10518 1.25629 0.99757 1.00505 0.83271 1.74533 1.18108 0.93028 1.24464 1.85265 1.60909 1.27224 1.24750 1.27878 0.95425 0.95797 0.81907 1.21802 0.99888 0.90995 1.02328 1.87637 1.17700 1.27899 1.72754 1.21313 0.98218 0.92661 0.97048 1.20645 0.94461 1.06886 1.35412 0.95253 1.25982 1.03127 0.94434 0.94715 1.70039 1.35758 1.13389 1.39068 0.85548 0.78311 0.78019 0.80132 1.18555 1.20690 1.15553 1.71858 1.17496 1.02592 1.29668 0.93627 0.93853 0.86122 0.73566 0.82206 0.82044 0.83320 0.83538 0.92239 0.92699 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.70 127.77 1.37 2.44 16 2 N -0.71 -9.01 5.71 -484.51 -2.77 -11.78 16 3 C 0.51 11.49 7.82 87.66 0.69 12.18 16 4 O -0.59 -21.59 16.03 -3.04 -0.05 -21.64 16 5 C -0.04 -0.74 6.33 29.10 0.18 -0.56 16 6 C 0.18 5.17 6.71 138.46 0.93 6.10 16 7 N -0.39 -12.39 12.16 -60.35 -0.73 -13.12 16 8 O 0.08 2.45 11.31 74.86 0.85 3.30 16 9 C 0.21 6.59 7.77 88.38 0.69 7.28 16 10 C 0.00 -0.05 6.57 71.24 0.47 0.42 16 11 S -0.28 -12.04 21.64 -56.49 -1.22 -13.27 16 12 C 0.06 2.50 4.77 71.23 0.34 2.84 16 13 C -0.54 -31.05 9.68 25.60 0.25 -30.80 16 14 H 0.03 1.96 7.96 -2.91 -0.02 1.94 16 15 C 0.02 0.98 5.47 84.66 0.46 1.44 16 16 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 17 Si 0.96 41.11 27.47 68.60 1.88 42.99 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 21 N -0.48 -15.34 11.55 -303.23 -3.50 -18.84 16 22 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.43 1.28 8.83 -92.71 -0.82 0.46 16 26 H 0.16 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.15 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.06 2.46 7.20 -2.39 -0.02 2.44 16 31 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -85.69 303.26 0.41 -85.28 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 0.28 Total: 4.05 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.37 Total: 1.35 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -6.71 Total: -102.06 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.80 Total: -18.35 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.88 Total: 42.99 kcal Atomic # 16 Polarization: -12.04 SS G_CDS: -1.22 Total: -13.27 kcal Total: -85.69 0.41 -85.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.622 kcal (2) G-P(sol) polarization free energy of solvation -85.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds