Wall clock time and date at job start Mon Mar 30 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48506 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47278 * 299.99573 * 3 2 1 6 6 H 1.48498 * 109.47203 * 59.99751 * 3 2 1 7 7 C 1.37880 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00393 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00392 * 180.02562 * 10 9 7 12 12 O 1.21595 * 119.99664 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00474 * 179.97438 * 11 10 9 14 14 N 1.40098 * 119.99547 * 0.02562 * 13 11 10 15 15 C 1.39842 * 119.99625 * 180.02562 * 14 13 11 16 16 C 1.38801 * 120.06972 * 0.02562 * 15 14 13 17 17 C 1.38352 * 119.93265 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.97546 * 180.02562 * 17 16 15 19 19 C 1.38490 * 120.05714 * 0.02562 * 17 16 15 20 20 C 1.38282 * 120.13467 * 359.95696 * 19 17 16 21 21 C 1.38272 * 120.07326 * 0.04513 * 20 19 17 22 22 F 1.35098 * 120.03346 * 180.25775 * 21 20 19 23 23 H 0.96997 * 119.99851 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47072 * 59.99583 * 9 7 2 25 25 H 1.09005 * 109.47023 * 300.00643 * 9 7 2 26 26 H 0.97002 * 119.99826 * 359.97438 * 10 9 7 27 27 H 0.96993 * 120.00137 * 179.97438 * 13 11 10 28 28 H 0.96998 * 120.00832 * 359.97438 * 14 13 11 29 29 H 1.08006 * 120.03683 * 359.95796 * 16 15 14 30 30 H 1.07998 * 119.93079 * 179.97438 * 19 17 16 31 31 H 1.07991 * 119.96527 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5582 -5.1056 0.0006 13 7 2.6294 -5.9079 0.0021 14 7 4.0068 -5.6518 0.0036 15 6 4.9155 -6.7148 0.0037 16 6 4.4543 -8.0240 0.0018 17 6 5.3558 -9.0734 0.0013 18 9 4.9080 -10.3480 -0.0011 19 6 6.7171 -8.8185 0.0033 20 6 7.1793 -7.5153 0.0049 21 6 6.2832 -6.4622 0.0054 22 9 6.7357 -5.1893 0.0016 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 2.3060 -6.8223 0.0022 28 1 4.3302 -4.7374 0.0038 29 1 3.3928 -8.2232 0.0009 30 1 7.4190 -9.6393 0.0034 31 1 8.2414 -7.3196 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312603991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:36 Heat of formation + Delta-G solvation = -51.888619 kcal Electronic energy + Delta-G solvation = -19701.874003 eV Core-core repulsion = 16042.003259 eV Total energy + Delta-G solvation = -3659.870744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.18039 -49.02811 -40.01635 -38.91777 -36.19550 -34.39827 -32.50831 -31.82386 -30.57546 -28.24093 -27.21367 -23.64813 -22.93582 -22.57654 -20.41117 -19.20544 -18.73865 -17.63612 -17.20093 -16.67914 -16.15228 -16.10786 -15.54760 -15.48037 -15.10289 -14.94036 -14.59663 -14.34366 -14.03616 -13.30046 -13.21634 -13.21342 -12.77902 -12.12797 -12.07564 -11.58008 -11.47156 -11.01471 -10.96638 -10.41248 -9.85730 -9.61964 -9.45528 -9.00828 -8.84629 -8.11247 -7.43608 -6.23130 -4.30639 0.70409 0.92466 1.85422 3.13202 3.20343 3.27336 3.30203 3.50583 3.59529 3.87185 3.97888 4.28252 4.32537 4.64163 4.77629 4.96914 5.13568 5.29956 5.50447 5.72675 5.78848 5.81252 6.22491 6.52003 6.89805 7.18784 7.30363 7.42770 7.43990 7.76748 7.92420 8.57622 8.73747 8.97784 9.36106 10.87025 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.003936 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.858102 B = 7111.321417 C = 8118.035081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.264 3.736 10 N -0.722 5.722 11 C 0.702 3.298 12 O -0.578 6.578 13 N -0.544 5.544 14 N -0.531 5.531 15 C 0.228 3.772 16 C -0.217 4.217 17 C 0.148 3.852 18 F -0.134 7.134 19 C -0.191 4.191 20 C -0.068 4.068 21 C 0.013 3.987 22 F -0.135 7.135 23 H 0.266 0.734 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.383 0.617 27 H 0.426 0.574 28 H 0.432 0.568 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.149 -15.892 0.010 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.143 3.857 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.452 6.452 13 N -0.302 5.302 14 N -0.258 5.258 15 C 0.120 3.880 16 C -0.242 4.242 17 C 0.128 3.872 18 F -0.112 7.112 19 C -0.213 4.213 20 C -0.088 4.088 21 C -0.012 4.012 22 F -0.114 7.114 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.216 0.784 27 H 0.271 0.729 28 H 0.277 0.723 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.789 -15.655 0.009 20.861 hybrid contribution 0.842 0.976 -0.001 1.289 sum 14.631 -14.678 0.009 20.725 Atomic orbital electron populations 1.69979 1.06113 1.27358 1.48628 1.24938 0.94932 0.99480 0.94545 0.86332 0.79818 0.82788 0.77817 1.19591 1.20725 1.20729 1.21216 0.93302 0.90273 1.53609 0.91840 1.19118 0.87677 0.80877 0.98044 1.45829 1.10832 1.04476 1.76437 1.15972 0.84135 0.80937 0.78854 1.90996 1.12140 1.82573 1.59495 1.44826 0.92225 1.09710 1.83400 1.43323 0.94082 1.07100 1.81254 1.17356 0.87032 0.87801 0.95860 1.20193 1.00648 0.89552 1.13835 1.17265 0.92079 0.78375 0.99531 1.91520 1.89995 1.36186 1.93533 1.20720 0.93639 0.97432 1.09495 1.20728 0.99916 0.90462 0.97682 1.16938 0.89493 0.80106 1.14698 1.91504 1.89234 1.35868 1.94812 0.92380 0.95276 0.95280 0.78412 0.72911 0.72327 0.84130 0.84010 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.29 55.43 0.74 -24.86 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.82 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.26 6.84 5.43 -5.20 -0.03 6.81 16 10 N -0.72 -14.92 5.51 -66.42 -0.37 -15.29 16 11 C 0.70 13.91 8.68 -86.92 -0.75 13.15 16 12 O -0.58 -13.76 17.18 5.28 0.09 -13.67 16 13 N -0.54 -7.99 6.22 27.64 0.17 -7.82 16 14 N -0.53 -6.71 6.45 32.46 0.21 -6.50 16 15 C 0.23 2.53 6.73 -83.68 -0.56 1.96 16 16 C -0.22 -2.22 9.46 -39.33 -0.37 -2.59 16 17 C 0.15 1.41 7.30 -39.45 -0.29 1.12 16 18 F -0.13 -1.35 17.26 2.25 0.04 -1.32 16 19 C -0.19 -1.50 10.02 -39.47 -0.40 -1.90 16 20 C -0.07 -0.54 10.02 -39.55 -0.40 -0.94 16 21 C 0.01 0.13 7.31 -39.25 -0.29 -0.15 16 22 F -0.14 -1.53 16.64 2.25 0.04 -1.49 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.38 6.81 6.24 -40.82 -0.25 6.56 16 27 H 0.43 5.40 6.71 -182.61 -1.22 4.18 16 28 H 0.43 5.41 6.19 -182.60 -1.13 4.28 16 29 H 0.14 1.32 6.20 -52.48 -0.33 0.99 16 30 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 286.73 15.07 4.32 4.32 Total: -1.00 -31.17 286.73 -7.44 -38.61 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.16 Total: 8.18 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.50 Total: 4.32 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.75 Total: -54.47 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.17 -7.44 -38.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312603991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.278 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds