Wall clock time and date at job start Mon Mar 30 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48506 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47278 * 299.99573 * 3 2 1 6 6 H 1.48498 * 109.47203 * 59.99751 * 3 2 1 7 7 C 1.37880 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00393 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00392 * 180.02562 * 10 9 7 12 12 O 1.21595 * 119.99664 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00474 * 179.97438 * 11 10 9 14 14 N 1.40098 * 119.99547 * 0.02562 * 13 11 10 15 15 C 1.39842 * 119.99625 * 180.02562 * 14 13 11 16 16 C 1.38801 * 120.06972 * 0.02562 * 15 14 13 17 17 C 1.38352 * 119.93265 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.97546 * 180.02562 * 17 16 15 19 19 C 1.38490 * 120.05714 * 0.02562 * 17 16 15 20 20 C 1.38282 * 120.13467 * 359.95696 * 19 17 16 21 21 C 1.38272 * 120.07326 * 0.04513 * 20 19 17 22 22 F 1.35098 * 120.03346 * 180.25775 * 21 20 19 23 23 H 0.96997 * 119.99851 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47072 * 59.99583 * 9 7 2 25 25 H 1.09005 * 109.47023 * 300.00643 * 9 7 2 26 26 H 0.97002 * 119.99826 * 359.97438 * 10 9 7 27 27 H 0.96993 * 120.00137 * 179.97438 * 13 11 10 28 28 H 0.96998 * 120.00832 * 359.97438 * 14 13 11 29 29 H 1.08006 * 120.03683 * 359.95796 * 16 15 14 30 30 H 1.07998 * 119.93079 * 179.97438 * 19 17 16 31 31 H 1.07991 * 119.96527 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5582 -5.1056 0.0006 13 7 2.6294 -5.9079 0.0021 14 7 4.0068 -5.6518 0.0036 15 6 4.9155 -6.7148 0.0037 16 6 4.4543 -8.0240 0.0018 17 6 5.3558 -9.0734 0.0013 18 9 4.9080 -10.3480 -0.0011 19 6 6.7171 -8.8185 0.0033 20 6 7.1793 -7.5153 0.0049 21 6 6.2832 -6.4622 0.0054 22 9 6.7357 -5.1893 0.0016 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0021 27 1 2.3060 -6.8223 0.0022 28 1 4.3302 -4.7374 0.0038 29 1 3.3928 -8.2232 0.0009 30 1 7.4190 -9.6393 0.0034 31 1 8.2414 -7.3196 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312603991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:36 Heat of formation + Delta-G solvation = -73.548471 kcal Electronic energy + Delta-G solvation = -19702.813245 eV Core-core repulsion = 16042.003259 eV Total energy + Delta-G solvation = -3660.809986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94732 -49.85671 -41.37811 -39.97284 -37.35510 -36.29827 -34.38590 -33.01140 -31.34753 -29.39180 -28.98290 -25.14526 -24.12681 -23.52263 -21.98116 -20.57564 -19.79481 -18.53569 -18.41192 -17.78947 -17.64803 -17.01136 -16.73705 -16.66078 -16.44158 -16.32467 -16.04136 -15.31521 -15.06064 -14.78280 -14.52093 -14.11708 -13.95070 -13.85507 -13.57157 -12.92884 -12.77766 -12.44589 -12.31230 -12.23756 -11.63622 -11.46992 -10.86532 -10.66403 -9.99273 -9.76936 -8.46558 -8.30790 -6.47292 -0.04913 0.17415 0.72056 1.44050 1.44666 1.58055 1.94379 2.07120 2.40222 2.41923 3.04904 3.09193 3.12285 3.60953 3.75810 3.97537 4.20677 4.37140 4.74481 4.91055 5.02595 5.09144 5.11823 5.19121 5.21981 5.35941 5.50020 5.73396 5.79356 6.11674 6.25811 6.63257 7.10693 7.22356 7.40701 8.81540 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.003936 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.858102 B = 7111.321417 C = 8118.035081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.281 3.719 10 N -0.717 5.717 11 C 0.703 3.297 12 O -0.624 6.624 13 N -0.523 5.523 14 N -0.537 5.537 15 C 0.210 3.790 16 C -0.222 4.222 17 C 0.137 3.863 18 F -0.138 7.138 19 C -0.173 4.173 20 C -0.059 4.059 21 C 0.007 3.993 22 F -0.143 7.143 23 H 0.270 0.730 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.399 0.601 27 H 0.438 0.562 28 H 0.432 0.568 29 H 0.143 0.857 30 H 0.172 0.828 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.449 -16.398 0.011 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.159 3.841 10 N -0.372 5.372 11 C 0.402 3.598 12 O -0.502 6.502 13 N -0.279 5.279 14 N -0.267 5.267 15 C 0.105 3.895 16 C -0.246 4.246 17 C 0.117 3.883 18 F -0.117 7.117 19 C -0.194 4.194 20 C -0.078 4.078 21 C -0.018 4.018 22 F -0.122 7.122 23 H 0.079 0.921 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.235 0.765 27 H 0.285 0.715 28 H 0.276 0.724 29 H 0.160 0.840 30 H 0.189 0.811 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 17.184 -16.255 0.011 23.654 hybrid contribution -0.074 0.936 -0.001 0.938 sum 17.110 -15.319 0.010 22.966 Atomic orbital electron populations 1.70131 1.08183 1.28605 1.49727 1.26011 0.95765 1.03729 0.93764 0.85114 0.79057 0.77364 0.77708 1.17740 1.20428 1.20438 1.21593 0.94283 0.90408 1.53219 0.89914 1.18555 0.87984 0.82897 0.94700 1.45367 1.10867 1.03922 1.77039 1.15920 0.84028 0.81276 0.78535 1.90961 1.14469 1.83482 1.61280 1.44256 0.93349 1.08813 1.81445 1.43258 0.92573 1.07713 1.83166 1.17495 0.87125 0.87536 0.97391 1.20300 1.01151 0.89600 1.13570 1.17443 0.92816 0.77994 1.00076 1.91516 1.90166 1.36366 1.93618 1.21092 0.93250 0.98301 1.06722 1.21087 1.01100 0.89616 0.96004 1.17221 0.89396 0.80432 1.14777 1.91489 1.89236 1.36531 1.94898 0.92144 0.98844 0.98850 0.76520 0.71544 0.72358 0.83971 0.81072 0.80352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 41.75 29.54 68.60 2.03 43.78 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.56 -29.83 9.28 25.60 0.24 -29.59 16 8 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.28 15.24 5.43 85.63 0.46 15.70 16 10 N -0.72 -30.31 5.51 -482.30 -2.66 -32.97 16 11 C 0.70 28.62 8.68 179.05 1.55 30.17 16 12 O -0.62 -31.00 17.18 -4.02 -0.07 -31.07 16 13 N -0.52 -15.36 6.22 -184.74 -1.15 -16.51 16 14 N -0.54 -13.20 6.45 -51.22 -0.33 -13.53 16 15 C 0.21 4.35 6.73 38.20 0.26 4.61 16 16 C -0.22 -4.20 9.46 22.43 0.21 -3.99 16 17 C 0.14 2.28 7.30 22.36 0.16 2.44 16 18 F -0.14 -2.52 17.26 44.97 0.78 -1.74 16 19 C -0.17 -2.06 10.02 22.34 0.22 -1.84 16 20 C -0.06 -0.72 10.02 22.29 0.22 -0.50 16 21 C 0.01 0.12 7.31 22.48 0.16 0.29 16 22 F -0.14 -2.94 16.64 44.97 0.75 -2.19 16 23 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 24 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 26 H 0.40 14.15 6.24 -92.71 -0.58 13.57 16 27 H 0.44 11.04 6.71 -213.33 -1.43 9.61 16 28 H 0.43 10.50 6.19 -213.32 -1.32 9.18 16 29 H 0.14 2.55 6.20 -2.91 -0.02 2.53 16 30 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.18 1.09 8.06 -2.92 -0.02 1.07 16 Total: -1.00 -69.17 286.73 1.48 -67.68 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -2.11 Total: 23.21 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 3.96 Total: 18.16 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -3.85 Total: -117.82 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.07 Total: -31.07 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 1.52 Total: -3.93 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -69.17 1.48 -67.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312603991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.865 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds