Wall clock time and date at job start Mon Mar 30 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46846 * 239.99499 * 2 1 3 5 5 N 1.46499 * 109.46840 * 185.00008 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21698 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.46667 * 119.99951 * 180.02562 * 6 5 4 9 9 C 1.37901 * 126.22410 * 179.68893 * 8 6 5 10 10 C 1.39889 * 107.09413 * 179.90759 * 9 8 6 11 11 Cl 1.73601 * 126.07288 * 180.13933 * 10 9 8 12 12 C 1.35515 * 107.85399 * 0.36085 * 10 9 8 13 13 N 1.35631 * 108.85097 * 359.77691 * 12 10 9 14 14 H 0.96996 * 125.67713 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.46878 * 119.99901 * 2 1 3 16 16 C 1.36929 * 119.99940 * 274.99762 * 15 2 1 17 17 H 1.08007 * 120.00260 * 359.97438 * 16 15 2 18 18 C 1.38808 * 120.00410 * 180.02562 * 16 15 2 19 19 N 1.31620 * 120.00574 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47288 * 90.00101 * 20 18 16 22 22 H 1.48504 * 109.47017 * 210.00442 * 20 18 16 23 23 H 1.48498 * 109.47019 * 329.99930 * 20 18 16 24 24 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46751 * 300.00344 * 1 2 3 26 26 H 1.09002 * 109.46824 * 60.00084 * 1 2 3 27 27 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 28 28 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 29 29 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 30 30 H 1.07996 * 126.45027 * 0.04300 * 9 8 6 31 31 H 1.08001 * 125.57937 * 179.80217 * 12 10 9 32 32 H 0.96996 * 120.00090 * 94.99890 * 15 2 1 33 33 H 0.97004 * 120.00299 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1911 7 8 3.5679 -1.8843 -3.1435 8 6 5.6347 -1.5342 -2.1321 9 6 6.4477 -2.1257 -3.0759 10 6 7.7647 -1.9996 -2.6213 11 17 9.1865 -2.5730 -3.4358 12 6 7.7330 -1.3547 -1.4299 13 7 6.4440 -1.0665 -1.1217 14 1 6.1426 -0.6070 -0.3225 15 7 2.0184 -0.6906 1.1962 16 6 2.1491 -0.0075 2.3757 17 1 1.8927 1.0406 2.4241 18 6 2.6123 -0.6616 3.5090 19 7 2.7375 -0.0051 4.6429 20 14 3.0578 -2.4738 3.4249 21 1 4.4906 -2.6149 3.0611 22 1 2.8186 -3.1043 4.7480 23 1 2.2183 -3.1428 2.3988 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7199 -1.2951 28 1 1.7517 -0.1585 -2.1370 29 1 3.9824 -0.4629 -0.4316 30 1 6.1281 -2.5957 -3.9942 31 1 8.5934 -1.1097 -0.8249 32 1 2.2490 -1.6317 1.1527 33 1 3.0615 -0.4622 5.4348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317231113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:54 Heat of formation + Delta-G solvation = 9.600352 kcal Electronic energy + Delta-G solvation = -18220.768791 eV Core-core repulsion = 15115.361089 eV Total energy + Delta-G solvation = -3105.407702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.48415 -39.10909 -36.60446 -36.50213 -33.84842 -32.10109 -31.04183 -29.85095 -29.19898 -26.07164 -23.56983 -22.57845 -20.77387 -20.42607 -20.23612 -18.98455 -17.75917 -16.00546 -15.77237 -15.62607 -15.01625 -14.60721 -14.23876 -14.03429 -13.67924 -13.47093 -13.03750 -13.00057 -12.68175 -12.37185 -12.21807 -11.94326 -11.74212 -11.07435 -10.97643 -10.93760 -10.52942 -10.22957 -10.05541 -9.75628 -9.15277 -9.08606 -8.97148 -8.40283 -7.49050 -5.94317 -3.32071 1.29795 2.05072 2.30622 2.96852 3.20596 3.28151 3.30403 3.34195 3.35450 4.41916 4.75926 4.83595 5.02338 5.08623 5.19765 5.35727 5.47014 5.65344 5.73636 5.87338 5.98133 6.07571 6.26394 6.29530 6.42475 6.53047 6.59189 6.84710 7.04876 7.59471 7.80874 8.20671 8.24227 9.01553 9.73708 9.92858 11.23351 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.004956 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.320296 B = 5648.649645 C = 6690.749838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 H 0.063 0.937 4 C 0.112 3.888 5 N -0.716 5.716 6 C 0.584 3.416 7 O -0.535 6.535 8 C -0.035 4.035 9 C -0.099 4.099 10 C -0.129 4.129 11 Cl -0.052 7.052 12 C 0.042 3.958 13 N -0.527 5.527 14 H 0.429 0.571 15 N -0.749 5.749 16 C -0.250 4.250 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.880 3.120 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.404 0.596 30 H 0.156 0.844 31 H 0.181 0.819 32 H 0.362 0.638 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -1.689 -13.151 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.055 3.945 3 H 0.081 0.919 4 C -0.012 4.012 5 N -0.367 5.367 6 C 0.371 3.629 7 O -0.412 6.412 8 C -0.148 4.148 9 C -0.126 4.126 10 C -0.162 4.162 11 Cl -0.023 7.023 12 C -0.097 4.097 13 N -0.123 5.123 14 H 0.268 0.732 15 N -0.393 5.393 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.710 3.290 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.240 0.760 30 H 0.174 0.826 31 H 0.198 0.802 32 H 0.195 0.805 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.132 -1.789 -13.567 15.918 hybrid contribution 0.570 -1.028 0.937 1.504 sum 8.702 -2.817 -12.630 15.594 Atomic orbital electron populations 1.22328 0.97567 1.01419 1.01043 1.20502 0.93059 0.95998 0.84986 0.91889 1.21816 0.78576 1.01548 0.99249 1.45907 1.08811 1.58964 1.22989 1.16972 0.84482 0.78511 0.82947 1.90832 1.68288 1.48682 1.33394 1.20477 0.91217 1.10261 0.92887 1.21120 0.89664 1.01843 0.99965 1.19921 0.88625 1.10543 0.97141 1.98320 1.37447 1.88052 1.78518 1.21764 0.87234 1.03090 0.97570 1.42046 1.06079 1.44926 1.19294 0.73166 1.42878 1.79812 1.09483 1.07172 1.19060 1.37585 0.95568 0.85775 0.89012 1.24663 1.01292 0.97216 0.95494 1.69691 1.52011 1.35638 1.00265 0.86641 0.78289 0.86896 0.77164 1.21210 1.21561 1.20303 0.93226 0.91767 0.93725 0.91458 0.90945 0.76040 0.82605 0.80218 0.80516 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.49 37.16 0.35 -2.22 16 2 C 0.16 2.76 3.05 -67.92 -0.21 2.55 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 C 0.11 1.69 5.23 -4.04 -0.02 1.66 16 5 N -0.72 -10.51 5.38 -61.62 -0.33 -10.84 16 6 C 0.58 9.06 7.79 -12.86 -0.10 8.96 16 7 O -0.53 -9.79 16.88 5.19 0.09 -9.70 16 8 C -0.03 -0.46 7.06 -81.98 -0.58 -1.04 16 9 C -0.10 -1.30 10.65 -39.09 -0.42 -1.71 16 10 C -0.13 -1.50 6.66 -39.94 -0.27 -1.76 16 11 Cl -0.05 -0.55 29.30 -51.86 -1.52 -2.07 16 12 C 0.04 0.42 11.87 -16.85 -0.20 0.22 16 13 N -0.53 -5.73 6.00 -9.35 -0.06 -5.79 16 14 H 0.43 3.98 8.19 -40.82 -0.33 3.65 16 15 N -0.75 -15.63 4.36 -53.42 -0.23 -15.87 16 16 C -0.25 -6.36 10.41 -15.06 -0.16 -6.51 16 17 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 19 N -0.93 -27.36 13.97 55.49 0.78 -26.58 16 20 Si 0.88 20.72 27.74 -169.99 -4.71 16.00 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.40 5.69 7.27 -40.82 -0.30 5.39 16 30 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.36 7.67 5.66 -40.82 -0.23 7.44 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -30.69 304.46 -6.93 -37.62 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -3.83 Total: 12.32 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.69 Total: 0.32 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.15 Total: -59.07 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.71 Total: 16.00 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.52 Total: -2.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.69 -6.93 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317231113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.217 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds