Wall clock time and date at job start Mon Mar 30 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46846 * 239.99499 * 2 1 3 5 5 N 1.46499 * 109.46840 * 185.00008 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21698 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.46667 * 119.99951 * 180.02562 * 6 5 4 9 9 C 1.37901 * 126.22410 * 179.68893 * 8 6 5 10 10 C 1.39889 * 107.09413 * 179.90759 * 9 8 6 11 11 Cl 1.73601 * 126.07288 * 180.13933 * 10 9 8 12 12 C 1.35515 * 107.85399 * 0.36085 * 10 9 8 13 13 N 1.35631 * 108.85097 * 359.77691 * 12 10 9 14 14 H 0.96996 * 125.67713 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.46878 * 119.99901 * 2 1 3 16 16 C 1.36929 * 119.99940 * 274.99762 * 15 2 1 17 17 H 1.08007 * 120.00260 * 359.97438 * 16 15 2 18 18 C 1.38808 * 120.00410 * 180.02562 * 16 15 2 19 19 N 1.31620 * 120.00574 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99716 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47288 * 90.00101 * 20 18 16 22 22 H 1.48504 * 109.47017 * 210.00442 * 20 18 16 23 23 H 1.48498 * 109.47019 * 329.99930 * 20 18 16 24 24 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46751 * 300.00344 * 1 2 3 26 26 H 1.09002 * 109.46824 * 60.00084 * 1 2 3 27 27 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 28 28 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 29 29 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 30 30 H 1.07996 * 126.45027 * 0.04300 * 9 8 6 31 31 H 1.08001 * 125.57937 * 179.80217 * 12 10 9 32 32 H 0.96996 * 120.00090 * 94.99890 * 15 2 1 33 33 H 0.97004 * 120.00299 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1911 7 8 3.5679 -1.8843 -3.1435 8 6 5.6347 -1.5342 -2.1321 9 6 6.4477 -2.1257 -3.0759 10 6 7.7647 -1.9996 -2.6213 11 17 9.1865 -2.5730 -3.4358 12 6 7.7330 -1.3547 -1.4299 13 7 6.4440 -1.0665 -1.1217 14 1 6.1426 -0.6070 -0.3225 15 7 2.0184 -0.6906 1.1962 16 6 2.1491 -0.0075 2.3757 17 1 1.8927 1.0406 2.4241 18 6 2.6123 -0.6616 3.5090 19 7 2.7375 -0.0051 4.6429 20 14 3.0578 -2.4738 3.4249 21 1 4.4906 -2.6149 3.0611 22 1 2.8186 -3.1043 4.7480 23 1 2.2183 -3.1428 2.3988 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7199 -1.2951 28 1 1.7517 -0.1585 -2.1370 29 1 3.9824 -0.4629 -0.4316 30 1 6.1281 -2.5957 -3.9942 31 1 8.5934 -1.1097 -0.8249 32 1 2.2490 -1.6317 1.1527 33 1 3.0615 -0.4622 5.4348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317231113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:54 Heat of formation + Delta-G solvation = -12.043843 kcal Electronic energy + Delta-G solvation = -18221.707354 eV Core-core repulsion = 15115.361089 eV Total energy + Delta-G solvation = -3106.346265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.42304 -40.30629 -38.07093 -37.34961 -35.34683 -33.83901 -31.98863 -31.36728 -30.36992 -27.27743 -25.40040 -23.67924 -21.91204 -21.63328 -21.24280 -20.27152 -19.48272 -17.18754 -17.10061 -16.87006 -16.39223 -15.80971 -15.53232 -15.21621 -14.93263 -14.62673 -14.48924 -14.32479 -13.91733 -13.79574 -13.48083 -13.29572 -12.88539 -12.81147 -12.50943 -12.15744 -11.82610 -11.81739 -11.74353 -11.31708 -11.02982 -10.25755 -9.95432 -9.37228 -9.31070 -8.02057 -5.36141 0.29446 1.19912 1.35142 1.40231 1.41407 1.45925 1.97196 2.21851 2.28498 2.46101 3.29438 3.53349 3.76283 3.89554 4.04748 4.16132 4.30924 4.51522 4.58439 4.70428 4.81637 4.83671 5.00307 5.21670 5.25853 5.33472 5.49620 5.57136 5.79665 6.20852 6.22036 6.44930 7.02910 7.06922 7.81293 8.00123 9.18965 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.004956 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.320296 B = 5648.649645 C = 6690.749838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.712 5.712 6 C 0.586 3.414 7 O -0.569 6.569 8 C -0.058 4.058 9 C -0.105 4.105 10 C -0.146 4.146 11 Cl -0.045 7.045 12 C 0.064 3.936 13 N -0.519 5.519 14 H 0.436 0.564 15 N -0.749 5.749 16 C -0.223 4.223 17 H 0.064 0.936 18 C -0.053 4.053 19 N -0.980 5.980 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.304 1.304 23 H -0.264 1.264 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.408 0.592 30 H 0.152 0.848 31 H 0.217 0.783 32 H 0.363 0.637 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 -2.276 -14.206 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.082 0.918 4 C -0.004 4.004 5 N -0.363 5.363 6 C 0.375 3.625 7 O -0.449 6.449 8 C -0.172 4.172 9 C -0.132 4.132 10 C -0.179 4.179 11 Cl -0.016 7.016 12 C -0.075 4.075 13 N -0.117 5.117 14 H 0.278 0.722 15 N -0.393 5.393 16 C -0.354 4.354 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.630 5.630 20 Si 0.771 3.229 21 H -0.198 1.198 22 H -0.231 1.231 23 H -0.189 1.189 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.244 0.756 30 H 0.169 0.831 31 H 0.233 0.767 32 H 0.196 0.804 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.045 -2.365 -14.668 17.394 hybrid contribution 0.293 -0.758 1.187 1.439 sum 9.338 -3.123 -13.481 16.694 Atomic orbital electron populations 1.22228 0.96313 1.01677 1.01577 1.20665 0.93822 0.95842 0.84139 0.91837 1.21709 0.78787 1.01265 0.98601 1.45859 1.08681 1.58787 1.22981 1.17170 0.85265 0.77755 0.82346 1.90807 1.69207 1.50246 1.34619 1.20165 0.90418 1.12310 0.94295 1.21241 0.90580 1.01550 0.99846 1.20022 0.88402 1.11493 0.97948 1.98322 1.36744 1.88041 1.78514 1.22357 0.87614 1.00601 0.96914 1.42052 1.06111 1.44499 1.19001 0.72241 1.42847 1.79995 1.09452 1.07010 1.18991 1.34820 0.94501 0.87107 0.91804 1.25311 1.02611 1.01300 0.95243 1.69857 1.54580 1.37461 1.01139 0.85613 0.78834 0.81880 0.76536 1.19769 1.23128 1.18881 0.93116 0.93955 0.90482 0.91845 0.89266 0.75643 0.83064 0.76687 0.80369 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.49 71.98 0.68 -3.98 16 2 C 0.16 5.20 3.05 44.99 0.14 5.33 16 3 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 4 C 0.12 3.36 5.23 86.38 0.45 3.82 16 5 N -0.71 -19.69 5.38 -467.08 -2.51 -22.21 16 6 C 0.59 17.47 7.79 86.44 0.67 18.15 16 7 O -0.57 -20.41 16.88 -4.34 -0.07 -20.48 16 8 C -0.06 -1.49 7.06 40.35 0.28 -1.20 16 9 C -0.10 -2.62 10.65 22.59 0.24 -2.38 16 10 C -0.15 -3.07 6.66 22.04 0.15 -2.93 16 11 Cl -0.04 -0.86 29.30 -2.72 -0.08 -0.94 16 12 C 0.06 1.09 11.87 83.48 0.99 2.08 16 13 N -0.52 -10.05 6.00 -183.50 -1.10 -11.15 16 14 H 0.44 7.01 8.19 -92.71 -0.76 6.25 16 15 N -0.75 -30.14 4.36 -322.94 -1.41 -31.55 16 16 C -0.22 -11.29 10.41 84.03 0.87 -10.41 16 17 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 18 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 19 N -0.98 -58.67 13.97 21.65 0.30 -58.37 16 20 Si 0.94 42.33 27.74 68.60 1.90 44.23 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.26 -11.09 6.52 99.48 0.65 -10.45 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.41 10.72 7.27 -92.71 -0.67 10.05 16 30 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.36 14.60 5.66 -92.71 -0.52 14.07 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -65.91 304.46 1.13 -64.78 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.85 Total: 29.58 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.95 Total: 6.11 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -4.72 Total: -123.28 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.07 Total: -20.48 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.90 Total: 44.23 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -65.91 1.13 -64.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317231113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.740 kcal (2) G-P(sol) polarization free energy of solvation -65.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds