Wall clock time and date at job start Mon Mar 30 2020 01:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47028 * 2 1 4 4 C 1.52997 * 109.46895 * 119.99542 * 2 1 3 5 5 N 1.46502 * 109.47062 * 174.99892 * 4 2 1 6 6 C 1.34777 * 120.00170 * 179.97438 * 5 4 2 7 7 O 1.21696 * 119.99899 * 0.02562 * 6 5 4 8 8 C 1.46672 * 119.99885 * 180.02562 * 6 5 4 9 9 C 1.37893 * 126.21766 * 179.97438 * 8 6 5 10 10 C 1.39892 * 107.09191 * 179.74127 * 9 8 6 11 11 Cl 1.73598 * 126.07279 * 180.26745 * 10 9 8 12 12 C 1.35520 * 107.85278 * 0.26344 * 10 9 8 13 13 N 1.35632 * 108.84712 * 0.02562 * 12 10 9 14 14 H 0.97002 * 125.67301 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47385 * 239.99809 * 2 1 3 16 16 C 1.36934 * 120.00249 * 84.99676 * 15 2 1 17 17 H 1.08008 * 119.99987 * 0.02562 * 16 15 2 18 18 C 1.38811 * 120.00244 * 180.02562 * 16 15 2 19 19 N 1.31614 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99857 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46740 * 120.00396 * 20 18 16 23 23 H 1.48494 * 109.46984 * 239.99893 * 20 18 16 24 24 H 1.08998 * 109.47353 * 300.00736 * 1 2 3 25 25 H 1.09005 * 109.47183 * 60.00485 * 1 2 3 26 26 H 1.09003 * 109.47535 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47097 * 55.00641 * 4 2 1 28 28 H 1.08994 * 109.47427 * 295.00052 * 4 2 1 29 29 H 0.97005 * 119.99955 * 0.02562 * 5 4 2 30 30 H 1.08002 * 126.45818 * 0.02562 * 9 8 6 31 31 H 1.07989 * 125.57629 * 179.97438 * 12 10 9 32 32 H 0.97002 * 120.00178 * 265.00368 * 15 2 1 33 33 H 0.97002 * 120.00096 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4281 2.1913 7 8 3.5678 -1.8846 3.1434 8 6 5.6348 -1.5329 2.1328 9 6 6.4483 -2.1184 3.0799 10 6 7.7644 -2.0009 2.6207 11 17 9.1856 -2.5803 3.4320 12 6 7.7329 -1.3544 1.4301 13 7 6.4444 -1.0610 1.1248 14 1 6.1432 -0.5993 0.3266 15 7 2.0184 -0.6906 -1.1961 16 6 2.1491 -0.0076 -2.3757 17 1 1.8926 1.0404 -2.4242 18 6 2.6114 -0.6621 -3.5092 19 7 2.9235 -1.9394 -3.4503 20 14 2.7904 0.2699 -5.1182 21 1 2.3776 1.6826 -4.9206 22 1 4.2074 0.2260 -5.5606 23 1 1.9294 -0.3579 -6.1523 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1369 29 1 3.9824 -0.4621 0.4319 30 1 6.1290 -2.5844 4.0004 31 1 8.5931 -1.1118 0.8239 32 1 2.2491 -1.6318 -1.1526 33 1 3.2462 -2.3969 -4.2425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317231136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:57 Heat of formation + Delta-G solvation = 5.289126 kcal Electronic energy + Delta-G solvation = -18128.432035 eV Core-core repulsion = 15022.837384 eV Total energy + Delta-G solvation = -3105.594651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.37367 -38.96399 -36.44373 -36.38274 -33.72178 -32.04379 -30.92673 -29.54757 -28.72318 -25.95946 -23.82921 -22.50054 -20.68353 -20.31410 -20.12556 -18.75373 -17.40015 -15.87994 -15.70784 -15.42570 -14.87685 -14.50150 -14.22720 -13.77741 -13.67421 -13.37763 -13.12148 -12.93905 -12.35601 -12.19564 -12.08733 -11.85210 -11.47287 -10.99299 -10.89918 -10.86197 -10.44516 -10.11877 -9.93396 -9.83824 -9.11402 -8.97445 -8.83357 -8.29378 -7.16957 -5.93465 -3.24558 1.41627 2.13665 2.40458 3.08310 3.30354 3.37562 3.39632 3.44270 3.49871 4.43634 4.86041 4.95820 5.12785 5.32957 5.36912 5.46861 5.58314 5.82397 5.83987 5.99495 6.08546 6.21313 6.36825 6.46489 6.54566 6.64081 6.70508 6.94073 7.15952 7.55172 7.75000 8.23650 8.35393 9.35837 9.90144 10.25921 11.28154 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.004568 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.034238 B = 6128.122102 C = 7373.476154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.115 3.885 5 N -0.710 5.710 6 C 0.584 3.416 7 O -0.538 6.538 8 C -0.030 4.030 9 C -0.102 4.102 10 C -0.129 4.129 11 Cl -0.054 7.054 12 C 0.040 3.960 13 N -0.524 5.524 14 H 0.429 0.571 15 N -0.725 5.725 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.405 0.595 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.385 0.615 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 2.743 10.178 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.072 0.928 4 C -0.009 4.009 5 N -0.361 5.361 6 C 0.371 3.629 7 O -0.416 6.416 8 C -0.144 4.144 9 C -0.129 4.129 10 C -0.162 4.162 11 Cl -0.025 7.025 12 C -0.099 4.099 13 N -0.121 5.121 14 H 0.269 0.731 15 N -0.368 5.368 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.240 0.760 30 H 0.173 0.827 31 H 0.197 0.803 32 H 0.219 0.781 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.724 2.587 10.645 13.404 hybrid contribution 0.402 0.402 -1.780 1.869 sum 8.126 2.988 8.865 12.391 Atomic orbital electron populations 1.22356 0.98092 1.01400 1.00480 1.20526 0.92868 0.95687 0.86064 0.92838 1.21754 0.78691 1.01513 0.98922 1.45858 1.08730 1.58694 1.22826 1.16962 0.84464 0.78528 0.82979 1.90822 1.68312 1.48798 1.33623 1.20483 0.91234 1.10016 0.92700 1.21105 0.89664 1.02157 0.99946 1.19907 0.88582 1.10592 0.97126 1.98314 1.37618 1.87877 1.78723 1.21729 0.87292 1.03199 0.97635 1.42032 1.06010 1.44604 1.19454 0.73136 1.42511 1.78126 1.10859 1.05291 1.19276 1.37068 0.93942 0.87360 0.91011 1.24752 1.01954 0.95881 0.98011 1.69673 1.50462 1.08591 1.28949 0.86155 0.77311 0.78833 0.84067 1.20532 1.21882 1.21781 0.94073 0.92269 0.93107 0.91437 0.91423 0.75978 0.82678 0.80339 0.78084 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.16 2.81 3.05 -67.93 -0.21 2.60 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C 0.12 1.87 5.23 -4.04 -0.02 1.85 16 5 N -0.71 -11.22 5.38 -61.62 -0.33 -11.55 16 6 C 0.58 9.67 7.79 -12.86 -0.10 9.57 16 7 O -0.54 -10.41 16.88 5.19 0.09 -10.32 16 8 C -0.03 -0.43 7.05 -81.98 -0.58 -1.01 16 9 C -0.10 -1.41 10.65 -39.09 -0.42 -1.83 16 10 C -0.13 -1.58 6.66 -39.93 -0.27 -1.84 16 11 Cl -0.05 -0.60 29.30 -51.86 -1.52 -2.12 16 12 C 0.04 0.42 11.87 -16.84 -0.20 0.22 16 13 N -0.52 -6.10 6.00 -9.36 -0.06 -6.15 16 14 H 0.43 4.34 8.19 -40.82 -0.33 4.00 16 15 N -0.73 -16.14 4.56 -53.43 -0.24 -16.39 16 16 C -0.25 -6.15 9.93 -15.06 -0.15 -6.30 16 17 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 20 Si 0.91 20.88 29.55 -169.99 -5.02 15.85 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.40 6.21 7.27 -40.82 -0.30 5.91 16 30 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 31 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.39 9.39 7.80 -40.82 -0.32 9.07 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 307.57 15.07 4.64 4.64 Total: -1.00 -29.61 307.57 -7.28 -36.89 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -3.87 Total: 13.95 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.68 Total: 0.58 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.09 Total: -59.48 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.52 Total: -2.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.61 -7.28 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317231136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.182 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds