Wall clock time and date at job start Mon Mar 30 2020 01:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47028 * 2 1 4 4 C 1.52997 * 109.46895 * 119.99542 * 2 1 3 5 5 N 1.46502 * 109.47062 * 174.99892 * 4 2 1 6 6 C 1.34777 * 120.00170 * 179.97438 * 5 4 2 7 7 O 1.21696 * 119.99899 * 0.02562 * 6 5 4 8 8 C 1.46672 * 119.99885 * 180.02562 * 6 5 4 9 9 C 1.37893 * 126.21766 * 179.97438 * 8 6 5 10 10 C 1.39892 * 107.09191 * 179.74127 * 9 8 6 11 11 Cl 1.73598 * 126.07279 * 180.26745 * 10 9 8 12 12 C 1.35520 * 107.85278 * 0.26344 * 10 9 8 13 13 N 1.35632 * 108.84712 * 0.02562 * 12 10 9 14 14 H 0.97002 * 125.67301 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47385 * 239.99809 * 2 1 3 16 16 C 1.36934 * 120.00249 * 84.99676 * 15 2 1 17 17 H 1.08008 * 119.99987 * 0.02562 * 16 15 2 18 18 C 1.38811 * 120.00244 * 180.02562 * 16 15 2 19 19 N 1.31614 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99857 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46740 * 120.00396 * 20 18 16 23 23 H 1.48494 * 109.46984 * 239.99893 * 20 18 16 24 24 H 1.08998 * 109.47353 * 300.00736 * 1 2 3 25 25 H 1.09005 * 109.47183 * 60.00485 * 1 2 3 26 26 H 1.09003 * 109.47535 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47097 * 55.00641 * 4 2 1 28 28 H 1.08994 * 109.47427 * 295.00052 * 4 2 1 29 29 H 0.97005 * 119.99955 * 0.02562 * 5 4 2 30 30 H 1.08002 * 126.45818 * 0.02562 * 9 8 6 31 31 H 1.07989 * 125.57629 * 179.97438 * 12 10 9 32 32 H 0.97002 * 120.00178 * 265.00368 * 15 2 1 33 33 H 0.97002 * 120.00096 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4281 2.1913 7 8 3.5678 -1.8846 3.1434 8 6 5.6348 -1.5329 2.1328 9 6 6.4483 -2.1184 3.0799 10 6 7.7644 -2.0009 2.6207 11 17 9.1856 -2.5803 3.4320 12 6 7.7329 -1.3544 1.4301 13 7 6.4444 -1.0610 1.1248 14 1 6.1432 -0.5993 0.3266 15 7 2.0184 -0.6906 -1.1961 16 6 2.1491 -0.0076 -2.3757 17 1 1.8926 1.0404 -2.4242 18 6 2.6114 -0.6621 -3.5092 19 7 2.9235 -1.9394 -3.4503 20 14 2.7904 0.2699 -5.1182 21 1 2.3776 1.6826 -4.9206 22 1 4.2074 0.2260 -5.5606 23 1 1.9294 -0.3579 -6.1523 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1369 29 1 3.9824 -0.4621 0.4319 30 1 6.1290 -2.5844 4.0004 31 1 8.5931 -1.1118 0.8239 32 1 2.2491 -1.6318 -1.1526 33 1 3.2462 -2.3969 -4.2425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317231136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:57 Heat of formation + Delta-G solvation = -14.930381 kcal Electronic energy + Delta-G solvation = -18129.308818 eV Core-core repulsion = 15022.837384 eV Total energy + Delta-G solvation = -3106.471434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.39098 -40.25475 -37.92067 -37.33267 -35.28880 -33.71495 -31.93850 -30.87307 -30.19970 -27.25037 -25.68666 -23.66550 -21.84529 -21.58869 -21.20232 -20.00078 -19.21234 -17.16803 -17.04848 -16.76048 -16.34179 -15.70606 -15.53957 -15.18542 -15.01208 -14.64834 -14.40041 -13.89829 -13.88956 -13.66844 -13.43648 -13.08517 -12.82663 -12.79081 -12.50851 -12.13883 -11.80896 -11.72953 -11.66893 -11.28669 -10.98941 -10.20779 -9.92641 -9.28047 -9.04350 -7.92831 -5.22246 0.32828 1.21656 1.44033 1.48465 1.51930 1.59454 2.01070 2.25727 2.32521 2.56813 3.41808 3.78056 3.88540 3.96323 4.07219 4.18160 4.37448 4.54410 4.63254 4.72924 4.85151 4.85672 5.06460 5.24434 5.30715 5.36196 5.52413 5.56755 5.60414 6.25284 6.27596 6.49719 7.07283 7.35510 8.06918 8.31864 9.29701 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.004568 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.034238 B = 6128.122102 C = 7373.476154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.063 0.937 4 C 0.123 3.877 5 N -0.707 5.707 6 C 0.585 3.415 7 O -0.573 6.573 8 C -0.057 4.057 9 C -0.107 4.107 10 C -0.145 4.145 11 Cl -0.044 7.044 12 C 0.064 3.936 13 N -0.517 5.517 14 H 0.436 0.564 15 N -0.732 5.732 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.966 5.966 20 Si 0.964 3.036 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.303 1.303 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.407 0.593 30 H 0.151 0.849 31 H 0.217 0.783 32 H 0.373 0.627 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 4.151 10.160 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.081 0.919 4 C -0.002 4.002 5 N -0.357 5.357 6 C 0.373 3.627 7 O -0.454 6.454 8 C -0.170 4.170 9 C -0.135 4.135 10 C -0.178 4.178 11 Cl -0.016 7.016 12 C -0.075 4.075 13 N -0.114 5.114 14 H 0.277 0.723 15 N -0.374 5.374 16 C -0.365 4.365 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.231 1.231 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.243 0.757 30 H 0.168 0.832 31 H 0.234 0.766 32 H 0.205 0.795 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.498 4.051 10.640 14.207 hybrid contribution 0.182 -0.011 -1.687 1.696 sum 8.679 4.040 8.954 13.108 Atomic orbital electron populations 1.22245 0.96755 1.01206 1.01458 1.20689 0.93640 0.95694 0.84876 0.91929 1.21656 0.78923 1.00824 0.98762 1.45801 1.08576 1.58517 1.22764 1.17212 0.85381 0.77749 0.82378 1.90792 1.69300 1.50386 1.34901 1.20152 0.90346 1.12298 0.94246 1.21231 0.90654 1.01781 0.99791 1.20002 0.88367 1.11518 0.97928 1.98317 1.36754 1.87840 1.78677 1.22351 0.87628 1.00593 0.96949 1.42033 1.06079 1.44168 1.19098 0.72272 1.42636 1.78339 1.10321 1.06058 1.19607 1.34661 0.94196 0.88067 0.90317 1.25404 1.03102 0.96576 1.00881 1.69816 1.52590 1.10083 1.29173 0.85209 0.76625 0.78261 0.80415 1.19106 1.22136 1.23067 0.90737 0.93593 0.93928 0.92790 0.89618 0.75659 0.83151 0.76624 0.79546 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.41 3.05 44.99 0.14 5.55 16 3 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 4 C 0.12 3.85 5.23 86.38 0.45 4.30 16 5 N -0.71 -21.92 5.38 -467.09 -2.51 -24.43 16 6 C 0.58 19.31 7.79 86.45 0.67 19.99 16 7 O -0.57 -22.44 16.88 -4.33 -0.07 -22.51 16 8 C -0.06 -1.60 7.05 40.36 0.28 -1.31 16 9 C -0.11 -2.92 10.65 22.59 0.24 -2.68 16 10 C -0.15 -3.32 6.66 22.04 0.15 -3.18 16 11 Cl -0.04 -0.91 29.30 -2.72 -0.08 -0.99 16 12 C 0.06 1.20 11.87 83.48 0.99 2.19 16 13 N -0.52 -11.16 6.00 -183.51 -1.10 -12.26 16 14 H 0.44 8.08 8.19 -92.71 -0.76 7.32 16 15 N -0.73 -32.15 4.56 -322.94 -1.47 -33.62 16 16 C -0.23 -11.45 9.93 84.03 0.83 -10.62 16 17 H 0.08 3.71 7.83 -2.91 -0.02 3.68 16 18 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 19 N -0.97 -54.73 13.06 21.65 0.28 -54.45 16 20 Si 0.96 42.63 29.55 68.60 2.03 44.65 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.41 12.18 7.27 -92.70 -0.67 11.51 16 30 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.22 2.35 8.06 -2.92 -0.02 2.32 16 32 H 0.37 18.25 7.80 -92.71 -0.72 17.53 16 33 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -62.84 307.57 0.99 -61.85 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.99 Total: 34.76 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.91 Total: 7.01 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -4.81 Total: -124.77 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -62.84 0.99 -61.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317231136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.919 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds