Wall clock time and date at job start Mon Mar 30 2020 00:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46900 * 254.99920 * 3 2 1 5 5 C 1.36975 * 120.00237 * 264.97118 * 4 3 2 6 6 H 1.07999 * 120.00094 * 197.08459 * 5 4 3 7 7 C 1.38946 * 119.99952 * 17.08669 * 5 4 3 8 8 N 1.31440 * 119.99553 * 14.09931 * 7 5 4 9 9 Si 1.86797 * 120.00362 * 194.09400 * 7 5 4 10 10 H 1.48502 * 109.46814 * 90.00104 * 9 7 5 11 11 H 1.48495 * 109.47646 * 210.00017 * 9 7 5 12 12 H 1.48495 * 109.47126 * 330.00389 * 9 7 5 13 13 C 1.34783 * 119.99899 * 84.97480 * 4 3 2 14 14 O 1.21746 * 120.00103 * 4.12642 * 13 4 3 15 15 C 1.46495 * 119.99826 * 184.12843 * 13 4 3 16 16 C 1.40698 * 126.55096 * 310.96491 * 15 13 4 17 17 N 1.30685 * 108.72803 * 180.02562 * 16 15 13 18 18 N 1.39901 * 109.54292 * 359.97438 * 17 16 15 19 19 C 1.36329 * 132.15545 * 180.34556 * 18 17 16 20 20 C 1.35763 * 119.14786 * 180.16562 * 19 18 17 21 21 C 1.39963 * 119.35735 * 359.46148 * 20 19 18 22 22 N 1.31518 * 120.10391 * 0.27037 * 21 20 19 23 23 C 1.33344 * 120.85775 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46731 * 135.00074 * 3 2 1 25 25 H 1.08997 * 109.46872 * 14.99719 * 3 2 1 26 26 H 0.97008 * 119.99419 * 179.97438 * 8 7 5 27 27 H 1.08006 * 125.63470 * 0.02562 * 16 15 13 28 28 H 1.07994 * 120.42577 * 359.92795 * 19 18 17 29 29 H 1.08000 * 120.32414 * 179.73298 * 20 19 18 30 30 H 1.07998 * 119.94837 * 180.30428 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.3584 1.3341 5 6 3.4219 1.6581 1.6185 6 1 4.0296 1.8860 2.4817 7 6 2.9705 2.6833 0.7965 8 7 2.0179 2.4522 -0.0792 9 14 3.7171 4.3898 0.9359 10 1 4.8778 4.4989 0.0161 11 1 2.6989 5.4071 0.5707 12 1 4.1684 4.6201 2.3318 13 6 3.2248 -0.5915 2.2817 14 8 3.0075 -1.7577 2.0081 15 6 3.6260 -0.2205 3.6409 16 6 4.7109 0.6005 3.9997 17 7 4.7492 0.6997 5.3022 18 7 3.7024 -0.0427 5.8591 19 6 3.3141 -0.2516 7.1491 20 6 2.2367 -1.0399 7.3960 21 6 1.5433 -1.6102 6.3222 22 7 1.9386 -1.3861 5.0880 23 6 2.9995 -0.6176 4.8386 24 1 2.9710 0.7275 -0.7267 25 1 2.9718 -0.9918 -0.2659 26 1 1.7024 3.1681 -0.6528 27 1 5.3983 1.0710 3.3122 28 1 3.8588 0.2011 7.9644 29 1 1.9151 -1.2217 8.4108 30 1 0.6820 -2.2349 6.5074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318098866.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:28 Heat of formation + Delta-G solvation = 115.227604 kcal Electronic energy + Delta-G solvation = -20049.333248 eV Core-core repulsion = 16847.398393 eV Total energy + Delta-G solvation = -3201.934855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.32576 -40.45968 -38.87516 -37.39054 -36.28375 -34.96269 -33.43302 -32.10430 -30.91087 -28.95707 -26.73065 -25.78140 -24.54933 -23.21600 -21.16111 -20.00184 -19.09912 -18.38205 -18.15862 -17.56024 -17.05379 -16.73094 -16.27313 -15.97086 -15.35204 -15.04703 -14.86136 -14.46403 -14.38971 -13.84410 -13.68131 -13.61002 -13.37060 -13.10484 -12.87306 -12.50658 -12.42230 -12.15484 -12.08248 -11.92315 -11.15053 -10.75741 -10.56891 -10.49853 -9.94195 -8.86309 -8.30894 -5.92418 -0.41079 -0.09892 1.08268 1.26528 1.51505 1.54826 1.62910 1.80602 2.18582 2.29088 2.38865 2.53911 2.96679 3.00282 3.12497 3.37808 3.61323 3.71340 4.04353 4.18296 4.30504 4.48595 4.60559 4.68678 4.82724 5.00658 5.10715 5.28628 5.46953 5.58958 5.69816 6.35548 6.39721 6.73398 7.00189 7.10949 7.49415 7.90101 8.72391 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.007425 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.500631 B = 3770.197694 C = 4646.335830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.269 3.731 3 C 0.232 3.768 4 N -0.445 5.445 5 C -0.344 4.344 6 H 0.121 0.879 7 C -0.004 4.004 8 N -0.904 5.904 9 Si 0.992 3.008 10 H -0.260 1.260 11 H -0.297 1.297 12 H -0.262 1.262 13 C 0.542 3.458 14 O -0.622 6.622 15 C -0.283 4.283 16 C 0.134 3.866 17 N -0.328 5.328 18 N -0.313 5.313 19 C 0.148 3.852 20 C -0.202 4.202 21 C 0.178 3.822 22 N -0.513 5.513 23 C 0.278 3.722 24 H 0.140 0.860 25 H 0.103 0.897 26 H 0.272 0.728 27 H 0.225 0.775 28 H 0.222 0.778 29 H 0.227 0.773 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.722 -1.436 15.090 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.048 4.048 3 C 0.106 3.894 4 N -0.164 5.164 5 C -0.471 4.471 6 H 0.139 0.861 7 C -0.205 4.205 8 N -0.544 5.544 9 Si 0.816 3.184 10 H -0.184 1.184 11 H -0.223 1.223 12 H -0.186 1.186 13 C 0.332 3.668 14 O -0.509 6.509 15 C -0.300 4.300 16 C -0.045 4.045 17 N -0.151 5.151 18 N -0.083 5.083 19 C 0.014 3.986 20 C -0.225 4.225 21 C -0.003 4.003 22 N -0.225 5.225 23 C 0.047 3.953 24 H 0.158 0.842 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.241 0.759 28 H 0.239 0.761 29 H 0.244 0.756 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.246 -1.593 14.864 15.540 hybrid contribution 0.221 0.935 -0.502 1.084 sum 4.466 -0.658 14.362 15.054 Atomic orbital electron populations 1.80801 1.14818 1.14677 1.10016 1.29825 0.95950 0.87970 0.91071 1.18824 0.79970 1.02625 0.87994 1.43647 1.56245 1.08055 1.08425 1.20301 1.31839 0.80911 1.14010 0.86123 1.26098 0.94985 1.03313 0.96109 1.69971 1.25587 1.35103 1.23707 0.84924 0.77798 0.76362 0.79347 1.18442 1.22305 1.18649 1.17198 0.81021 0.84647 0.83941 1.90631 1.57959 1.20125 1.82172 1.19366 1.04965 1.13763 0.91866 1.24368 0.95547 0.92315 0.92292 1.77373 1.07703 1.20177 1.09839 1.47156 1.21076 1.32793 1.07282 1.23129 0.96156 0.95575 0.83720 1.22476 0.95771 0.99900 1.04342 1.24395 0.97594 0.92460 0.85853 1.68211 1.12164 1.15836 1.26336 1.20327 0.91210 0.94344 0.89426 0.84246 0.87945 0.91795 0.75900 0.76114 0.75628 0.76775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.83 18.54 20.01 0.37 -28.46 16 2 C 0.27 14.07 13.67 89.44 1.22 15.30 16 3 C 0.23 10.90 5.11 84.58 0.43 11.34 16 4 N -0.45 -22.04 2.60 -650.11 -1.69 -23.73 16 5 C -0.34 -16.35 9.06 84.06 0.76 -15.59 16 6 H 0.12 5.30 4.24 -2.91 -0.01 5.29 16 7 C 0.00 -0.19 5.07 84.92 0.43 0.24 16 8 N -0.90 -45.81 9.01 21.67 0.20 -45.61 16 9 Si 0.99 37.73 29.58 68.60 2.03 39.76 16 10 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 11 H -0.30 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 13 C 0.54 27.65 7.44 86.39 0.64 28.29 16 14 O -0.62 -34.92 16.75 -4.50 -0.08 -35.00 16 15 C -0.28 -12.76 5.35 -19.88 -0.11 -12.86 16 16 C 0.13 5.01 9.80 85.46 0.84 5.85 16 17 N -0.33 -11.28 12.57 -56.55 -0.71 -11.99 16 18 N -0.31 -10.08 3.86 -191.73 -0.74 -10.82 16 19 C 0.15 2.78 11.29 83.42 0.94 3.72 16 20 C -0.20 -2.71 10.05 22.11 0.22 -2.49 16 21 C 0.18 3.91 11.28 85.16 0.96 4.87 16 22 N -0.51 -19.40 10.47 -191.82 -2.01 -21.40 16 23 C 0.28 11.34 7.90 134.01 1.06 12.40 16 24 H 0.14 6.31 6.22 -2.39 -0.01 6.29 16 25 H 0.10 4.41 7.52 -2.39 -0.02 4.39 16 26 H 0.27 13.37 8.31 -92.70 -0.77 12.60 16 27 H 0.22 7.08 7.12 -2.91 -0.02 7.06 16 28 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 30 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -80.26 278.31 5.99 -74.27 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.21 Total: 11.93 kcal Atomic # 6 Polarization: 43.65 SS G_CDS: 7.40 Total: 51.05 kcal Atomic # 7 Polarization: -137.43 SS G_CDS: -4.58 Total: -142.02 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.08 Total: -35.00 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -80.26 5.99 -74.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318098866.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.496 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds