Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47374 * 314.96945 * 3 2 1 5 5 C 1.36913 * 120.00569 * 272.40414 * 4 3 2 6 6 H 1.08001 * 120.00494 * 187.95400 * 5 4 3 7 7 C 1.39013 * 119.99960 * 7.96319 * 5 4 3 8 8 N 1.31396 * 119.99695 * 24.73500 * 7 5 4 9 9 Si 1.86789 * 120.00207 * 204.73584 * 7 5 4 10 10 H 1.48506 * 109.47204 * 94.99016 * 9 7 5 11 11 H 1.48498 * 109.47377 * 214.98380 * 9 7 5 12 12 H 1.48499 * 109.47310 * 334.99065 * 9 7 5 13 13 C 1.34776 * 119.99824 * 92.40867 * 4 3 2 14 14 O 1.21626 * 120.00025 * 183.91295 * 13 4 3 15 15 C 1.47492 * 119.99836 * 3.91491 * 13 4 3 16 16 C 1.41849 * 119.99047 * 127.90467 * 15 13 4 17 17 C 1.35623 * 119.59298 * 180.32192 * 16 15 13 18 18 C 1.41054 * 119.42211 * 359.67331 * 17 16 15 19 19 N 1.32194 * 133.24853 * 180.02562 * 18 17 16 20 20 N 1.28645 * 109.57042 * 179.97438 * 19 18 17 21 21 C 1.30737 * 110.33873 * 359.97438 * 20 19 18 22 22 N 1.36259 * 107.44873 * 359.97438 * 21 20 19 23 23 C 1.35849 * 133.51894 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46749 * 194.97039 * 3 2 1 25 25 H 1.09000 * 109.47559 * 74.97908 * 3 2 1 26 26 H 0.96996 * 119.99573 * 180.02562 * 8 7 5 27 27 H 1.08000 * 120.20509 * 359.97438 * 16 15 13 28 28 H 1.08005 * 120.28941 * 179.65249 * 17 16 15 29 29 H 1.07994 * 126.27165 * 179.97438 * 21 20 19 30 30 H 1.08000 * 119.81826 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9752 0.9771 5 6 3.2780 -0.6050 2.2827 6 1 3.7575 -1.2817 2.9745 7 6 2.8446 0.6421 2.7181 8 7 1.8721 1.2577 2.0843 9 14 3.6448 1.4425 4.2041 10 1 4.7161 2.3662 3.7519 11 1 2.6231 2.2048 4.9659 12 1 4.2314 0.3931 5.0757 13 6 3.3682 -2.2376 0.5908 14 8 3.7057 -3.0663 1.4146 15 6 3.2561 -2.6140 -0.8308 16 6 4.3395 -3.2583 -1.4813 17 6 4.2301 -3.5949 -2.7905 18 6 3.0362 -3.3046 -3.4833 19 7 2.6399 -3.5047 -4.7284 20 7 1.4438 -3.0552 -4.8774 21 6 1.0059 -2.5477 -3.7550 22 7 1.9965 -2.6870 -2.8297 23 6 2.1054 -2.3505 -1.5181 24 1 2.9708 0.9937 0.2655 25 1 2.9715 -0.2655 -0.9925 26 1 1.5699 2.1280 2.3879 27 1 5.2480 -3.4744 -0.9388 28 1 5.0502 -4.0808 -3.2984 29 1 0.0368 -2.1002 -3.5912 30 1 1.2803 -1.8654 -1.0178 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318199693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = 130.073240 kcal Electronic energy + Delta-G solvation = -20086.256920 eV Core-core repulsion = 16884.965820 eV Total energy + Delta-G solvation = -3201.291099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.46277 -39.68767 -37.47735 -36.19585 -34.65439 -33.92386 -32.39228 -31.07121 -29.38765 -27.79243 -25.75945 -24.20605 -23.47003 -22.41808 -20.31868 -18.39383 -17.95290 -17.65024 -16.72192 -16.60998 -16.30721 -15.35727 -14.99105 -14.89806 -14.47096 -14.01140 -13.41560 -13.25964 -12.86681 -12.54130 -12.24266 -11.99023 -11.87044 -11.66063 -11.52722 -11.38262 -11.23268 -10.85443 -10.61736 -10.57608 -10.56098 -9.56960 -9.51769 -9.03878 -8.47098 -8.08750 -6.85998 -4.25694 0.55502 1.04455 2.29680 2.65593 2.91777 3.05792 3.10672 3.15817 3.37021 3.51467 3.62705 3.86333 4.10324 4.29274 4.50285 4.54747 4.67316 4.82203 4.91097 4.97040 5.08543 5.45724 5.63487 5.71744 5.89709 6.01604 6.08299 6.23479 6.33056 6.82439 7.16421 7.49614 7.93407 8.40231 8.54050 8.64878 8.82926 9.34143 10.18671 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029384 B = 0.005988 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.661597 B = 4675.092118 C = 5367.402580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.243 3.757 3 C 0.211 3.789 4 N -0.421 5.421 5 C -0.315 4.315 6 H 0.119 0.881 7 C 0.036 3.964 8 N -0.866 5.866 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.483 3.517 14 O -0.559 6.559 15 C -0.106 4.106 16 C -0.044 4.044 17 C -0.091 4.091 18 C 0.198 3.802 19 N -0.299 5.299 20 N -0.256 5.256 21 C 0.117 3.883 22 N -0.386 5.386 23 C 0.074 3.926 24 H 0.133 0.867 25 H 0.084 0.916 26 H 0.280 0.720 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.225 0.775 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -0.943 -5.996 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.074 4.074 3 C 0.083 3.917 4 N -0.139 5.139 5 C -0.441 4.441 6 H 0.137 0.863 7 C -0.170 4.170 8 N -0.504 5.504 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.271 3.729 14 O -0.442 6.442 15 C -0.113 4.113 16 C -0.069 4.069 17 C -0.112 4.112 18 C -0.051 4.051 19 N -0.145 5.145 20 N -0.095 5.095 21 C -0.166 4.166 22 N -0.066 5.066 23 C -0.051 4.051 24 H 0.151 0.849 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.173 0.827 28 H 0.178 0.822 29 H 0.241 0.759 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.456 -1.573 -7.140 7.712 hybrid contribution 0.296 1.141 2.152 2.454 sum 2.752 -0.432 -4.988 5.713 Atomic orbital electron populations 1.80973 1.13134 1.09252 1.10840 1.29083 0.95244 0.92131 0.90957 1.18988 0.81953 0.98231 0.92489 1.43674 1.54272 1.06998 1.08957 1.19900 1.37626 1.00969 0.85628 0.86293 1.25368 0.94603 0.97012 0.99972 1.69797 1.21759 1.16629 1.42169 0.85773 0.78932 0.79260 0.80125 1.19805 1.20845 1.18893 1.17287 0.87055 0.82783 0.85800 1.90708 1.52888 1.48573 1.52066 1.19998 0.93652 1.01411 0.96234 1.21225 0.98588 0.93924 0.93148 1.20160 0.94542 1.02797 0.93710 1.22536 0.91725 0.99861 0.91014 1.74865 1.05552 1.22272 1.11798 1.74122 1.04473 1.10297 1.20570 1.26538 0.96839 1.08484 0.84708 1.43781 1.14066 1.39045 1.09674 1.22085 1.00638 1.00821 0.81513 0.84925 0.89797 0.90918 0.82674 0.82215 0.75884 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.75 18.48 42.15 0.78 -8.98 16 2 C 0.24 4.79 10.58 -20.76 -0.22 4.57 16 3 C 0.21 3.77 4.76 -6.83 -0.03 3.74 16 4 N -0.42 -8.79 2.58 -119.14 -0.31 -9.10 16 5 C -0.31 -7.29 9.41 -15.00 -0.14 -7.43 16 6 H 0.12 2.92 7.32 -52.49 -0.38 2.54 16 7 C 0.04 0.80 4.92 -17.45 -0.09 0.71 16 8 N -0.87 -19.57 9.00 55.50 0.50 -19.07 16 9 Si 0.93 17.77 29.62 -169.99 -5.03 12.74 16 10 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 13 C 0.48 9.83 7.12 -12.49 -0.09 9.74 16 14 O -0.56 -13.33 16.67 5.25 0.09 -13.25 16 15 C -0.11 -1.72 4.74 -105.34 -0.50 -2.22 16 16 C -0.04 -0.59 9.78 -39.14 -0.38 -0.97 16 17 C -0.09 -1.14 10.09 -39.45 -0.40 -1.54 16 18 C 0.20 3.03 7.92 -155.95 -1.23 1.80 16 19 N -0.30 -5.06 12.29 31.19 0.38 -4.68 16 20 N -0.26 -4.21 12.18 29.87 0.36 -3.84 16 21 C 0.12 1.65 12.97 -89.06 -1.16 0.50 16 22 N -0.39 -5.82 2.94 -63.60 -0.19 -6.01 16 23 C 0.07 1.15 8.61 -16.37 -0.14 1.01 16 24 H 0.13 2.42 6.43 -51.93 -0.33 2.09 16 25 H 0.08 1.22 5.90 -51.93 -0.31 0.91 16 26 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 27 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.22 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.17 2.77 4.89 -52.49 -0.26 2.51 16 LS Contribution 272.98 15.07 4.11 4.11 Total: -1.00 -29.09 272.98 -5.36 -34.45 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -1.68 Total: 3.70 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -4.38 Total: 9.92 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 1.53 Total: -51.67 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.09 -5.36 -34.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318199693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.525 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds