Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46844 * 25.51282 * 3 2 1 5 5 C 1.36790 * 120.00036 * 262.55621 * 4 3 2 6 6 H 1.08001 * 120.00056 * 208.02029 * 5 4 3 7 7 C 1.39097 * 119.99444 * 28.01756 * 5 4 3 8 8 N 1.31326 * 120.00268 * 26.66602 * 7 5 4 9 9 Si 1.86805 * 119.99828 * 206.66273 * 7 5 4 10 10 H 1.48500 * 109.46821 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47082 * 120.00021 * 9 7 5 12 12 H 1.48498 * 109.47541 * 240.00242 * 9 7 5 13 13 C 1.34781 * 120.00361 * 82.56268 * 4 3 2 14 14 O 1.21590 * 119.99992 * 181.61923 * 13 4 3 15 15 C 1.47805 * 119.99732 * 1.61830 * 13 4 3 16 16 C 1.39822 * 119.43660 * 172.30358 * 15 13 4 17 17 C 1.36943 * 119.59564 * 180.02562 * 16 15 13 18 18 C 1.39935 * 118.37380 * 0.02562 * 17 16 15 19 19 N 1.35435 * 133.79816 * 179.97438 * 18 17 16 20 20 C 1.30214 * 109.57741 * 180.02562 * 19 18 17 21 21 N 1.36018 * 110.17796 * 0.02562 * 20 19 18 22 22 H 0.96999 * 126.29168 * 179.97438 * 21 20 19 23 23 C 1.37943 * 107.40707 * 359.97438 * 21 20 19 24 24 N 1.31889 * 133.81399 * 179.97438 * 23 21 20 25 25 H 1.08999 * 109.46842 * 265.51026 * 3 2 1 26 26 H 1.08999 * 109.46632 * 145.51107 * 3 2 1 27 27 H 0.97005 * 119.99579 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.20639 * 359.97438 * 16 15 13 29 29 H 1.08006 * 120.81313 * 179.72530 * 17 16 15 30 30 H 1.08004 * 124.91407 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.2456 -0.5949 5 6 3.4699 -2.2872 0.2095 6 1 4.2160 -2.9908 -0.1293 7 6 2.8884 -2.4401 1.4638 8 7 1.6819 -1.9730 1.6896 9 14 3.8235 -3.3099 2.8271 10 1 5.1521 -3.7384 2.3206 11 1 4.0066 -2.3819 3.9718 12 1 3.0557 -4.5002 3.2727 13 6 3.1791 -1.3660 -1.9348 14 8 3.5568 -2.4106 -2.4293 15 6 2.8100 -0.2282 -2.8030 16 6 3.0514 -0.3065 -4.1780 17 6 2.7112 0.7461 -4.9854 18 6 2.1284 1.8741 -4.3972 19 7 1.6823 3.0582 -4.8801 20 6 1.2186 3.7816 -3.9016 21 7 1.3367 3.1100 -2.7247 22 1 1.0653 3.4312 -1.8506 23 6 1.9134 1.8881 -3.0029 24 7 2.2573 0.8513 -2.2638 25 1 2.9713 0.0813 1.0245 26 1 2.9709 0.8479 -0.5819 27 1 1.2766 -2.0794 2.5645 28 1 3.5041 -1.1912 -4.6007 29 1 2.8929 0.7084 -6.0494 30 1 0.8014 4.7720 -4.0089 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320108036.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = 111.209593 kcal Electronic energy + Delta-G solvation = -20132.665265 eV Core-core repulsion = 16930.556176 eV Total energy + Delta-G solvation = -3202.109089 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16398 -39.33945 -37.30229 -35.73374 -34.25608 -33.57696 -32.08064 -30.97518 -29.61243 -27.37043 -25.60832 -23.93238 -22.89367 -21.47830 -20.09407 -18.44357 -17.86818 -17.25543 -16.84439 -16.28386 -15.45820 -15.16112 -14.75315 -14.48155 -14.15869 -13.69657 -13.40904 -13.20394 -12.59718 -12.40944 -12.30730 -11.92168 -11.56044 -11.26990 -11.19865 -11.10373 -10.92287 -10.58445 -10.46894 -10.26153 -9.34852 -9.12555 -8.73974 -8.51430 -8.29536 -8.03171 -6.65290 -4.10583 0.74006 1.48289 2.63352 2.72045 3.05141 3.16398 3.23012 3.52793 3.77262 4.03977 4.12839 4.20399 4.36924 4.47262 4.64304 4.83514 4.99170 5.17607 5.33035 5.44168 5.51705 5.83409 5.95172 6.24799 6.29592 6.35274 6.47298 6.81754 7.14213 7.32975 7.72978 7.84188 7.99844 8.20540 8.87847 8.92807 9.04937 9.67441 10.37902 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029381 B = 0.006173 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.777816 B = 4534.438873 C = 5215.569457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.265 3.735 3 C 0.214 3.786 4 N -0.402 5.402 5 C -0.317 4.317 6 H 0.112 0.888 7 C 0.040 3.960 8 N -0.840 5.840 9 Si 0.924 3.076 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.486 3.514 14 O -0.568 6.568 15 C 0.150 3.850 16 C -0.132 4.132 17 C -0.029 4.029 18 C -0.002 4.002 19 N -0.491 5.491 20 C 0.266 3.734 21 N -0.589 5.589 22 H 0.428 0.572 23 C 0.239 3.761 24 N -0.465 5.465 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.276 0.724 28 H 0.154 0.846 29 H 0.142 0.858 30 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 11.723 -5.054 13.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.053 4.053 3 C 0.087 3.913 4 N -0.119 5.119 5 C -0.445 4.445 6 H 0.129 0.871 7 C -0.169 4.169 8 N -0.475 5.475 9 Si 0.749 3.251 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.275 3.725 14 O -0.451 6.451 15 C 0.002 3.998 16 C -0.156 4.156 17 C -0.057 4.057 18 C -0.122 4.122 19 N -0.211 5.211 20 C -0.022 4.022 21 N -0.204 5.204 22 H 0.267 0.733 23 C 0.002 3.998 24 N -0.182 5.182 25 H 0.118 0.882 26 H 0.137 0.863 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.730 11.460 -5.133 12.578 hybrid contribution 0.391 -0.350 1.300 1.402 sum 1.121 11.110 -3.833 11.806 Atomic orbital electron populations 1.80824 1.13613 1.10255 1.11448 1.28851 0.94959 0.91080 0.90458 1.19159 0.82375 0.89040 1.00706 1.43511 1.52515 1.12095 1.03798 1.19786 1.21120 1.07588 0.95997 0.87085 1.25512 0.94325 0.97277 0.99753 1.69961 1.10660 1.43143 1.23707 0.85914 0.80252 0.78931 0.79989 1.18617 1.20236 1.20581 1.17527 0.86568 0.86235 0.82161 1.90658 1.52765 1.28384 1.73253 1.21578 0.94446 0.90744 0.93045 1.21561 1.01109 0.99798 0.93107 1.20377 0.95118 0.89752 1.00406 1.19755 1.05475 0.95303 0.91714 1.70337 1.17099 1.03463 1.30232 1.25342 0.98741 0.98936 0.79165 1.42815 1.52550 1.13307 1.11688 0.73272 1.19169 0.99956 0.88806 0.91877 1.67109 1.14084 0.99232 1.37813 0.88239 0.86255 0.91324 0.82841 0.84065 0.76323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.84 18.54 42.15 0.78 -11.05 16 2 C 0.26 6.09 11.76 -20.76 -0.24 5.84 16 3 C 0.21 4.47 4.78 -6.83 -0.03 4.44 16 4 N -0.40 -9.66 2.57 -119.03 -0.31 -9.96 16 5 C -0.32 -8.07 9.03 -15.02 -0.14 -8.20 16 6 H 0.11 2.91 7.63 -52.49 -0.40 2.51 16 7 C 0.04 0.98 4.65 -17.45 -0.08 0.90 16 8 N -0.84 -21.44 10.38 55.50 0.58 -20.87 16 9 Si 0.92 18.81 29.63 -169.99 -5.04 13.77 16 10 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.49 11.58 7.51 -12.35 -0.09 11.48 16 14 O -0.57 -14.93 16.08 5.29 0.08 -14.85 16 15 C 0.15 3.00 6.60 -82.98 -0.55 2.45 16 16 C -0.13 -2.26 9.55 -39.46 -0.38 -2.64 16 17 C -0.03 -0.44 10.16 -39.42 -0.40 -0.84 16 18 C 0.00 -0.03 7.25 -84.56 -0.61 -0.64 16 19 N -0.49 -6.97 11.27 -11.91 -0.13 -7.11 16 20 C 0.27 2.75 12.96 -89.72 -1.16 1.58 16 21 N -0.59 -6.99 6.22 -13.20 -0.08 -7.07 16 22 H 0.43 3.94 8.96 -40.82 -0.37 3.57 16 23 C 0.24 3.89 8.46 -155.73 -1.32 2.58 16 24 N -0.46 -8.65 4.86 -8.84 -0.04 -8.69 16 25 H 0.10 2.01 7.21 -51.93 -0.37 1.64 16 26 H 0.12 2.19 5.40 -51.93 -0.28 1.91 16 27 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.15 2.47 7.63 -52.49 -0.40 2.07 16 29 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.22 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -33.34 274.82 -6.82 -40.16 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -1.80 Total: 4.58 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: -5.00 Total: 16.95 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.79 Total: -64.76 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.04 Total: 13.77 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.34 -6.82 -40.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320108036.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.369 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds